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        <title>Custom Feed &#45; The BioLogos Forum</title>
    <link>http://biologos.org/resources/find/sort&#45;by&#45;Relevance/sort&#45;by&#45;Newest/Scientists,Evolution &#45; Evidence?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
    <description>This is a custom feed of BioLogos resources. Make a new feed at http://biologos.org/resources/find</description>
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    <dc:rights>Copyright 2013</dc:rights>
    <dc:date>2013-05-24T11:58:11-08:00</dc:date>    
    
    

            
            
        
      <item>
        <title>Series: What I Wish My Pastor Knew About... The Life of a Scientist</title>
        <link>http://biologos.org/blog/series/what&#45;i&#45;wish&#45;my&#45;pastor&#45;knew&#45;about?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/what&#45;i&#45;wish&#45;my&#45;pastor&#45;knew&#45;about?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Andy Crouch examines the life of a scientist based on his experience of walking alongside his wife Catherine, an experimental physicist. That relationship has shown him that a life in science is a journey “into a set of virtues,” of cultivating a specific character suited to the particular demands of research and investigation. Crouch&apos;s hope is to persuade pastors and others in the church to prayerfully support the scientific endeavor as a reflection of God’s image in humankind as well as offers some suggestions for ministering to their needs.</description>
        <content:encoded><![CDATA[<p>I am married to a scientist — to be specific, an experimental physicist (which I’d like to think is the very best kind). For more than 15 years now I’ve accompanied Catherine through a life in physics, a kind of Pilgrim’s Progress that began in the Slough of Graduate School, continued through the Testing Fields of the Job Search and the harrowing of the Vale of Tenure, and is now wending its way through the Elysian Fields of Mid-Career Teaching, Research, and Administration. Along the way, just like Christian in Bunyan’s classic, she has encountered plenty of both helpful and dangerous characters, some reassuringly metaphorical and others all too literal. And I, like Christian’s friend Hopeful, have tried to be a faithful companion, though often I’ve been able to do little more than cheer or wince at the twists and turns of a life in science.</p>

<p>There’s a serious point in my playful invocation of Pilgrim’s Progress. Like many of the most complex human endeavors — parenting, farming, becoming a Christian — the life of a scientist is not just an “occupation,” something that occupies us for a while and might then be followed by something entirely different. Being a scientist is as much about being as doing, as much about a particular way of being formed as a person as it is a set of activities or even skills. Training in science is induction not so much into a particular worldview (though it includes absorbing plenty of the kind of cognitive presuppositions that that word suggests) as it is a kind of posture or stance toward the world, toward one’s work, and toward one’s fellow human beings, both scientists and non-scientists. And the life of a scientist is a journey, one freighted with ultimate concerns and laden with values. It is a journey into a set of virtues, the habits and dispositions that make one a person of a particular kind of character.</p>

<p>When we talk about faith and science, we tend to focus on the cognitive content of both endeavors, the truth claims and worldviews that animate these two crucial dimensions of modern human life. These are important matters, and I don’t at all mean to diminish them. At the same time, there are inevitable limits to what any pastor can do to constructively integrate the knowledge content of science — so vast and rapidly expanding that even scientists cannot pretend to be expert in anything but a tiny portion — with the content of Christian faith. But there is another way to approach faith and science which I believe might well be more within reach of most pastors, and more essential to their job description than being deeply literate in the latest scientific discoveries and theories — and that is simply to attend to, and prayerfully support and encourage, the scientific life itself as a vocation that can reflect the image of God and be a place for working out one’s own salvation.</p>

<p>So here is what I wish our pastors — and fellow Christians — knew about the life of a working scientist.</p>

<h3>Delight and Wonder</h3>

<p>If there is one personality characteristic of the vast majority of scientists I have met, it is delight. There is something about science that attracts people who are fascinated and thrilled by the world. To be sure, any given scientist is delighted by things that you and I may find odd or indeed incomprehensible — the intricacies of protein folding, the strata of Antarctic ice cores, or the properties of Lebesgue spaces (and no, I have no idea what that last phrase really means). But the specificity of their delights is one of delight’s secrets: like love, delight is always most potent when it is particular. It is certainly possible to find lawyers who are delighted by law (I have one friend who can go on at great length, with enthusiasm, about corporate bankruptcies), dairy farmers who are delighted by cows, or lumberjacks who are delighted by trees — but I dare say your chances are much better that when you meet a scientist you will find that they are delighted with the tiny part of the world they study day to day. (At least when they are not frustrated with it — which we’ll examine below.)</p>

<p>In many scientists, delight is matched by wonder — a sense of astonishment at the beautiful, ingenious complexity to be found in the world. This is not the “wonder” that comes from ignorance — “I wonder how a light bulb really works?” — but a wonder that comes from understanding. Indeed, as we progress further into humanity’s scientific era we have been able to disabuse ourselves of a mistaken early-modern notion: that the more the world became comprehensible, the less it would be wonderful. That turns out not to be true at all — ask a scientist. Wonder grows as understanding grows. Indeed, wonder only grows if understanding grows. If we replace our childhood awe of lightning with an explanation like, “It’s nothing but a transfer of voltage across a highly resistive material” (an example of what G. K. Chesterton wittily called “nothing-buttery”) perhaps the world will seem like a less wonderful place. But those who actually pursue knowledge of lightning — of electromagnetism or cloud formation or weather systems or climate — end up being more in awe of the world than they were as children. This is surely one of the remarkable features of our cosmos: the more we understand about it, the more we are in awe of its beautiful elegance and simplicity, and at the same time its humbling complexity.</p>

<p>To be sure, many if not most scientists do not see this wonderful world in the way that most Christians would hope for. For us, wonder is a stepping-stone to worship — ascribing our awe for the world to a Creator whose worth it reveals. For many scientists, wonder is less a stepping-stone than a substitute for worship. Yet they stop and wonder all the same.</p>

<h3>Intellectual humility</h3>

<p>I doubt that humility is among the first traits most people think of when they think of scientists. And indeed, some scientists (like some academics and intellectuals generally) exhibit a combination of confidence in their own intellect and limitations in their social skills that makes them seem abrasive if not arrogant. A few have made a public career of intellectual overreaching, not least in matters of science and faith. But in my experience (and certainly, let me stress, in the case of my own wife!) this is much more the exception than the rule. If intellectual humility is essentially a willingness to admit what you do not and cannot know, science cultivates humility like few other pursuits can — because in few other pursuits do you so often find out that you were wrong.</p>

<p>Even though we tell the story of science through its high points — the discoveries and confirmed theories that won Nobel Prizes and launched new eras in technology — the actual practice of science, for nearly every working scientist, involves far more failure than success. This is especially true for experimental science, the kind that requires the most direct interaction with recalcitrant reality. On most days, in most labs, the data do not add up, Matlab has an untraceable bug, the laser is on the fritz, and all the cultures have been contaminated when the undergraduate research assistant sneezed. And while each of these everyday setbacks requires immense amounts of patience and persistence to overcome, they are only the quotidian version of the perplexity that begins early in the study of science. Every scientist, in the process of their training, has had to repeatedly discover that their intuitions about the world are simply wrong, or at least incomplete. Even great scientists have come up against the sheer oddity and unpredictability of the world — Albert Einstein, for example, never fully accepted the uncertainty at the heart of quantum mechanics, something that is now universally accepted by physicists.</p>

<p>This regular confrontation with the limits of one’s own knowledge and skill is not to be taken for granted. The other divisions of the academy, the social sciences and the humanities, deal with matters of such variability and complexity that it is often difficult to say conclusively that anyone, or any theory, is entirely wrong. Marx’s and Freud’s grand theories may not seem nearly as plausible as they once were, but there are thousands of people following their lines of thought without losing the respect of their intellectual peers. But Ptolemaic cosmology or Lamarckian evolution now have, simply, no followers. They have been proved wrong beyond a reasonable doubt (although Lamarck’s ideas, interestingly, turn out to have a grain of truth in a way very different from what he expected). Who is likely to be more intellectually humble — someone who early in her training, and daily in her work, learns that her assumptions have been wrong, or someone who can always argue his way out of any intellectual predicament? It is perhaps no accident that “grade inflation,” in which undergraduates’ grades ratchet ever upwards in a nod to the consumer realities of the modern university, is much less pervasive in the sciences, where you can’t cajole your way into an A. The honest, and humbling, truth is that there is likely more intellectual humility in the average physics laboratory than in the average theology classroom.</p>

<p class="intro">For more from the "What I Wish My Pastor Knew" series, visit <a href="http://ministrytheorem.calvinseminary.edu/essays/wiwmpk/" target="_blank">The Ministry Theorem</a>.</p>
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        <pubDate>Wed, 01 May 13 08:00:37 -0700</pubDate>
        <dc:creator>Andy Crouch</dc:creator>
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        <title>Does Resurrection Contradict Science?</title>
        <link>http://biologos.org/blog/does&#45;resurrection&#45;contradict&#45;science?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/does&#45;resurrection&#45;contradict&#45;science?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>So what then does Resurrection mean? For Benedict it represents a new dimension of reality breaking through into human experience. It is not a violation of the old; it is the manifestation of something new.</description>
        <content:encoded><![CDATA[<p>The scientific case against resurrection is pretty straightforward: once dead you stay dead -- that's just the way it works. Coming back to life after having been dead (I mean <em>really</em> dead) would constitute a violation of natural law -- a miracle -- and miracles just don't happen. Fair enough. But in his recent book on the last days of Jesus (<em>Jesus of Nazareth Holy Week: From the Entrance Into Jerusalem to the Resurrection</em>), Joseph Ratzinger (aka Pope Benedict XVI) argues that reckoning Resurrection as resuscitation of a corpse is to misunderstand its true significance. Jesus' Resurrection, he contends, was an utterly singular event, straining the very limits of human understanding:</p>

<p>"Anyone approaching the Resurrection accounts in the belief that he knows what rising from the dead means will inevitably misunderstand those accounts and will then dismiss them as meaningless" (p. 243).</p>

<p>In fact, if Jesus' Resurrection were "merely" coming back to life in any way that we might comprehend, then it would be of little significance.</p>

<p>"Now it must be acknowledged that if in Jesus' Resurrection we were dealing simply with the miracle of a resuscitated corpse, it would ultimately be of no concern to us" (p. 243).</p>

<p>So what then does Resurrection mean? For Benedict it represents a new dimension of reality breaking through into human experience. It is not a violation of the old; it is the manifestation of something new.</p>

<p>"Jesus had not returned to a normal human life in this world like Lazarus and the others whom Jesus raised from the dead. He has entered upon a different life, a new life -- he has entered the vast breadth of God himself..." (p. 244).</p>

<p>Because it is something entirely new, it cannot represent a violation of natural law as understood by science.</p>

<p>"Naturally there can be no contradiction of clear scientific data. The Resurrection accounts certainly speak of something outside our world of experience. They speak of something new, something unprecedented -- a new dimension of reality that is revealed. What already exists is not called into question. Rather we are told that there is a further dimension, beyond what was previously known. Does that contradict science? Can there really only ever be what there has always been? Can there not be something unexpected, something unimaginable, something new? If there really is a God, is he not able to create a new dimension of human existence, a new dimension of reality altogether?" (p. 246-7)</p>

<p>Thus, in this view, Resurrection (as with all true miracles) is not contrary to science, but an indicator that science does not (yet?) describe the full expanse of reality. Indeed, some may argue that science itself contains similar "indicators." The 11 (or so) dimensional universe required by some versions of string theory, the multiverse theory of the universe where ours is but one of an infinite array of universes with variable physical laws, quantum entanglements, "spooky" action at a distance, the mysterious emergence of consciousness from inorganic matter -- all push the limits of human reason and imagination, suggesting to some that reality may be far more complex than the human mind can grasp.</p>

<p>For a moment, let us entertain the possibility that Resurrection is as Benedict interprets it: not a violation of natural law but an indicator of something beyond our scientific understanding of the universe. This has interesting implications for understanding how believers and skeptics approach the issue. If Resurrection does not violate science, then science does not necessarily constitute an impediment to accepting the reality of Resurrection. If the difference between the skeptic and believer is not science, then is it just a matter of imagination? The believer imagines greater possibilities for the universe than the non-believer. While this is possible, it seems questionable. To my knowledge, no research has found differences in imaginative abilities between religious and non-religious people. Moreover, contrarian examples easily come to mind: Isaac Asimov was an atheist but hardly lacking in imagination when it came to science fiction. I tend to think that both believers and non-believers can imagine (with varying degrees of effort, I'm sure) the new possibilities implied by Resurrection.</p>

<p>Thus, if it is neither imagination nor science that prompts skepticism about Resurrection, then what is left? I suggest that it comes down to a question of authority: At what point does one allow imaginative possibilities to have authority over how one lives? To the believer, Resurrection has an authority that science fiction does not. Resurrection is not thought-provoking entertainment. It requires far more than just imagining greater possibilities for the universe. It requires a change of life, here and now. Unlike the microscopic hidden dimensions of string theory, the new dimension implied by Resurrection has "broken though" into everyday reality and demands a response -- even if that response is to actively ignore it.</p>

<p>Now, what convinces the believer that Resurrection merits such authority when other imaginative possibilities such as extraterrestrial life or time-travel do not? The answer here appears to be historical commitment. There's no record of people committing themselves to the point of martyrdom to other imaginative possibilities as they have to Resurrection. The earliest example of such commitment being found, of course, in the dramatic post-crucifixion turn-around of the Apostles. Such an astounding change of heart, followed by an unwavering commitment capable of altering human history demands a categorically unique explanation: Resurrection.</p>

<p>The believer's argument, however, remains unconvincing to the skeptic. However impressive they might be, a change of heart and steadfast commitment do not necessarily add up to a new dimension of reality. Extraordinary claims require extraordinary evidence. Fair enough. So a key question regarding the interpretation of Resurrection is this: Is the post-crucifixion history of Christianity extraordinary? Does it compel the dispassionate observer to concede that a categorically unique event could plausibly be its best explanation?</p>

<p>It ought to be upon questions such as those above that skeptics and believers respectfully engage one another, rather than the simplistic and often acrimonious sloganeering that has increasingly become the norm.</p>
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        <pubDate>Fri, 29 Mar 13 12:58:35 -0700</pubDate>
        <dc:creator>Matt J. Rossano</dc:creator>
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        <title>Evolution Basics: Darwin’s Early Observations on Biogeography</title>
        <link>http://biologos.org/blog/evolution&#45;basics&#45;darwins&#45;early&#45;observations&#45;on&#45;biogeography?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/evolution&#45;basics&#45;darwins&#45;early&#45;observations&#45;on&#45;biogeography?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>For Darwin, both of these observations (that oceanic islands lacked terrestrial mammals, and that endemic species on islands were most similar to a species on the closest mainland) had the same explanation: his hypothesis that endemic, oceanic species were the modified descendants of a colonizing species from the nearest continent.</description>
        <content:encoded><![CDATA[<p>In the previous post in this series, we discussed how scientific theories—broad, well-tested explanatory frameworks—get their start as hypotheses. As a hypothesis is used to make predictions, and those predictions are supported by experimentation, over time, scientists come to have more and more confidence in that hypothesis as a reliable guide for making predictions about the natural world. This means any current theory in science has gone through this transition, and its history can be traced.</p>

<p>Like any theory, Darwin’s idea that evolution proceeds through natural selection was once merely a hypothesis. In this post, we’ll look at some of the early observations Darwin made on <em>biogeography</em>: the study of where species are distributed across the globe. These lines of evidence would later prod him to consider the possibility that species arise through a natural process of gradual change over time, rather than being independently created in each location where they are found.</p>

<h3>The curious case of the missing mammals</h3>

<p><as a="" href="http://en.wikipedia.org/wiki/Second_voyage_of_HMS_Beagle" naturalist="" on="" the="" widely-travelled="">As a widely-travelled naturalist on the&nbsp;<a href="http://en.wikipedia.org/wiki/Second_voyage_of_HMS_Beagle">HMS <em>Beagle</em></a>,&nbsp;Darwin studied a large number of different environments and documented the species he found in each. <em>The Beagle</em>, engaged as it was in an effort to map the coastline of South America, naturally paid call to numerous island groups along the way, including islands at a great distance from a continent (i.e.<a href="http://en.wikipedia.org/wiki/Island#Oceanic_islands"><em>oceanic</em></a>&nbsp;islands). One observation that Darwin made about oceanic islands is that none that he studied had terrestrial mammals on them. Later work, after his voyage, would confirm that this was a general rule. Oceanic islands lack terrestrial mammal species, except for small species that were introduced by humans. In contrast, flying mammals (i.e. bats) were found on oceanic islands, and often these species were endemic (i.e. found nowhere else in the world but the island in question).</as></p>

<p>Darwin found these observations difficult to square with his (then) working assumption that species were independently created in (and specifically created <em>for</em>) the locations in which they are found across the globe. He discusses these observations, and the questions they raised in his mind, in two chapters entitled “Geographical Distribution” in his <a href="http://darwin-online.org.uk/content/frameset?pageseq=364&amp;itemID=F373&amp;viewtype=text"><em>Origin of Species</em></a>. After discussing the similar case that amphibians (such as frogs, newts, and so on) are also not to be found on oceanic islands, he turns his attention to the <a href="http://darwin-online.org.uk/content/frameset?pageseq=411&amp;itemID=F373&amp;viewtype=side">missing mammals</a>:</p>

<blockquote><p>Mammals offer another and similar case. I have carefully searched the oldest voyages, but have not finished my search; as yet I have not found a single instance, free from doubt, of a terrestrial mammal (excluding domesticated animals kept by the natives) inhabiting an island situated above 300 miles from a continent or great continental island.... It cannot be said, on the ordinary view of creation, that there has not been time for the creation of mammals; many volcanic islands are sufficiently ancient, as shown by the stupendous degradation which they have suffered and by their tertiary strata: there has also been time for the production of endemic species belonging to other classes; and on continents it is thought that mammals appear and disappear at a quicker rate than other and lower animals. Though terrestrial mammals do not occur on oceanic islands, aërial mammals do occur on almost every island. New Zealand possesses two bats found nowhere else in the world: Norfolk Island, the Viti Archipelago, the Bonin Islands, the Caroline and Marianne Archipelagoes, and Mauritius, all possess their peculiar bats. Why, it may be asked, has the supposed creative force produced bats and no other mammals on remote islands? On my view this question can easily be answered; for no terrestrial mammal can be transported across a wide space of sea, but bats can fly across. Bats have been seen wandering by day far over the Atlantic Ocean; and two North American species either regularly or occasionally visit Bermuda, at the distance of 600 miles from the mainland. I hear from Mr. Tomes, who has specially studied this family, that many of the same species have enormous ranges, and are found on continents and on far distant islands. Hence we have only to suppose that such wandering species have been modified through natural selection in their new homes in relation to their new position, and we can understand the presence of endemic bats on islands, with the absence of all terrestrial mammals.</p>
</blockquote>

<p>(As an aside, it’s important to note that Darwin, when he discusses the “supposed creative force” is not here arguing against the existence of God as creator in general, but rather against the “ordinary view of creation” common at the time: that God had episodically created species at specific geographical locations (what were called “centers of creation”) and that biogeographical patterns could be explained with limited dispersal from those centers. <a href="http://en.wikipedia.org/wiki/Charles_Darwin#Religious_views">Darwin himself</a>&nbsp;held to this common view at the start of his voyage on the <em>Beagle</em>, and that is the model he is attempting to refute in <em>Origin</em>, since it was a prevailing view among scientists at the time. Darwin and many of his scientific contemporaries also had no difficulty viewing natural processes as part of God’s regular action in the world, as is evident in Darwin’s <a href="http://www.darwinproject.ac.uk/darwin-and-design-article">correspondence</a>&nbsp;with American botanist Asa Gray, among others.)</p>

<p>So, for Darwin, his biogeographical observations sat at ease with his (later) ideas of colonization and subsequent species change through natural selection, but made no sense to him if one held to an independent creation model. Many oceanic islands were very old, yet no mammals had been created there. Many oceanic islands had habitat suitable for mammals (or, indeed, for amphibians, as he notes)&nbsp;yet no such species had been created for that suitable habitat.</p>

<h3>Island endemics and their continental “allied species”</h3>

<p>Darwin noticed more than the <em>absence</em> of certain species groups on oceanic islands. He also noticed an interesting feature of the species that were present: an endemic species on an oceanic island would often have strong similarities with a species on the mainland closest to the island in question. Additionally, the pairing of oceanic endemic species with continental species often seemed to override expectations that species found in similar environments would be more similar to each other. These observations prompted him to reflect further on the possible means by which these “closely allied species” arose. As Darwin would write in his <em>Origin</em> this repeated pattern made a significant impression on him, and further caused him to doubt that endemic species had been individually created for each oceanic island. His visit to the Galapagos would <a href="http://darwin-online.org.uk/content/frameset?pageseq=415&amp;itemID=F373&amp;viewtype=text">prove instrumental on this point</a>:</p>

<blockquote><p>The most striking and important fact for us in regard to the inhabitants of islands, is their affinity to those of the nearest mainland, without being actually the same species. Numerous instances could be given of this fact. I will give only one, that of the Galapagos Archipelago, situated under the equator, between 500 and 600 miles from the shores of South America. Here almost every product of the land and water bears the unmistakeable stamp of the American continent. There are twenty-six land birds, and twenty-five of these are ranked by Mr. Gould as distinct species, supposed to have been created here; yet the close affinity of most of these birds to American species in every character, in their habits, gestures, and tones of voice, was manifest. So it is with the other animals, and with nearly all the plants, as shown by Dr. Hooker in his admirable memoir on the Flora of this archipelago. The naturalist, looking at the inhabitants of these volcanic islands in the Pacific, distant several hundred miles from the continent, yet feels that he is standing on American land. Why should this be so? why should the species which are supposed to have been created in the Galapagos Archipelago, and nowhere else, bear so plain a stamp of affinity to those created in America? There is nothing in the conditions of life, in the geological nature of the islands, in their height or climate, or in the proportions in which the several classes are associated together, which resembles closely the conditions of the South American coast: in fact there is a considerable dissimilarity in all these respects. On the other hand, there is a considerable degree of resemblance in the volcanic nature of the soil, in climate, height, and size of the islands, between the Galapagos and Cape de Verde Archipelagos: but what an entire and absolute difference in their inhabitants! The inhabitants of the Cape de Verde Islands are related to those of Africa, like those of the Galapagos to America. I believe this grand fact can receive no sort of explanation on the ordinary view of independent creation; whereas on the view here maintained, it is obvious that the Galapagos Islands would be likely to receive colonists, whether by occasional means of transport or by formerly continuous land, from America; and the Cape de Verde Islands from Africa; and that such colonists would be liable to modification;—the principle of inheritance still betraying their original birthplace.</p>

<p>Many analogous facts could be given: indeed it is an almost universal rule that the endemic productions of islands are related to those of the nearest continent, or of other near islands.</p>
</blockquote>

<h3>Rethinking independent creation</h3>

<p>For Darwin, both of these observations (that oceanic islands lacked terrestrial mammals, and that endemic species on islands were most similar to a species on the closest mainland) had the same explanation: his hypothesis that endemic, oceanic species were the modified descendants of a colonizing species from the nearest continent. This also explained the lack of amphibians and terrestrial mammals (but allowed for bats) - simply based on the ability of these classes of life to disperse across large expanses of ocean. Those that could disperse and colonize oceanic islands would experience modification in the new environment, and species unable to colonize these islands would never appear. To Darwin’s thinking, this explanation was wholly more satisfactory than the assumption that God had independently created every endemic species in its place, and arbitrarily chosen that oceanic islands did not need terrestrial mammals and amphibians.</p>

<p>Despite Darwin’s musing on the biogeographical patterns he observed, and the strong suggestion these patterns made of species change over time, a mechanism for that change would take some time for him to imagine. In our next post, we’ll look at that mechanism: Darwin’s idea of natural selection, and the evidence he assembled in its support prior to publishing the <em>Origin</em>.</p>
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        <pubDate>Thu, 07 Mar 13 07:56:26 -0800</pubDate>
        <dc:creator>Dennis Venema</dc:creator>
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        <title>Evolution and Christian Faith Grantees Announced</title>
        <link>http://biologos.org/blog/evolution&#45;and&#45;christian&#45;faith&#45;grantees&#45;announced?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/evolution&#45;and&#45;christian&#45;faith&#45;grantees&#45;announced?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Congratulations to the 37 winners of the Evolution &amp; Christian Faith (ECF) grants competition! ECF is a new BioLogos program designed to support projects and network&#45;building among scholars, church leaders, and parachurch organizations.</description>
        <content:encoded><![CDATA[<p>Congratulations to the 37 winners of the Evolution &amp; Christian Faith (ECF) grants competition!&nbsp; ECF is a new BioLogos program designed to support projects and network-building among scholars, church leaders, and parachurch organizations. Each project takes a different approach to address theological and philosophical questions commonly voiced by Christians about evolutionary creation. ECF places a premium on scholarship with high “translational” potential—that which leaves the academy and makes an impact on the church. The program runs through August 2015.</p>

<p>Grantees will benefit from in-person interaction through a series of summer workshops in 2013, 2014, and 2015. These meetings will not only foster a broader knowledge base, but will build a sustained network of scholars and church leaders, both young and seasoned, who are serious about addressing the concerns of the church about evolution. Also in 2015, in connection with the third summer workshop, BioLogos will host a large conference open to scientists, scholars, and church leaders from around the world.</p>

<h3>ECF History</h3>

<p>In January 2012, BioLogos was awarded a multi-million dollar grant from the John Templeton Foundation to fund the work of scholars and church leaders on evolution and Christian faith. In spring 2012 we worked hard to get the word out. You may have seen announcements on the BioLogos website, in our newsletters, on the Books &amp; Culture, Leadership Journal, or First Things websites, on your professional society’s listserv, or perhaps on your friend’s blog.</p>

<p>The response was overwhelming: we received 225 letters of intent for a total request of $21 million—about seven times the amount we had to offer. We needed to invite the most promising applicants to submit a full proposal, but recognizing the projects with highest potential would require broad expertise. From the beginning, we envisioned that a panel of scientists, pastors, and scholars would oversee the application and review process as well as play key advisory roles throughout the project. A team of eight highly qualified individuals came on board in the early months of the project. They reviewed each proposal and together recommended that BioLogos invite 86 applicants to submit full applications.</p>

<p>The deadline for submissions was October 1, 2012. As in the previous round, the ECF panel evaluated each proposal. In addition, we asked 55 other experts to participate, so that each proposal received 3-4 scores. Criteria for the decision included significance of topic, project design, creativity and innovation, long-term impact potential, feasibility, and budget.</p>

<p>The panel then met together November 29-30, 2012, to make the final funding decisions. In the end, they recommended that BioLogos give 37 awards, ranging from $23,000 to $300,000. BioLogos staff notified applicants of their awards on December 14, 2013.</p>

<h3>The Grantees</h3>

<p>As part of our objective to create a network of scholars and leaders, we awarded grants to organizations across the U.S. and the world. Thirty of the 37 grantees are domestic; seven are international, hailing from Canada, France, Great Britain, Netherlands, and Spain.</p>

<p>Two-thirds of the accepted projects will be led by teams—some with three or more Project Leaders. We expect that the teamwork and time spent together at our summer workshops will be the start of a long-lasting network of people dedicated to helping the church think carefully about origins.</p>

<p>Applicants chose to apply under one of three program tracks: interdisciplinary scholarship (Track 1), intra-disciplinary scholarship (Track 2), and translational projects (Track 3). Track 1 projects focus on both the collaboration between individuals in different disciplines and the development of projects at the interface of different content areas. Track 2 projects focus on work done within a specific discipline. Track 3 focuses on projects that encourage Christians, especially those within more conservative traditions, to engage in meaningful and productive dialogue to reduce tensions between mainstream science and the Christian faith. The numbers of grantees in Tracks 1, 2, and 3 are 6, 8, and 23, respectively.</p>

<p>Many of the scholarly projects tackle questions about Adam and Eve, the Fall, human identity, and Original Sin—some of the most critical interpretive issues for evangelical theology.&nbsp; Some examples:&nbsp;</p>

<ul>
<li><p>Theologian Oliver Crisp of Fuller Seminary will take an analytic theology approach to ask to what extent a theological account of the origin of human sin depends upon the evolution of modern humans from one and only one ancestral pair—especially if that pair does not appear to correspond to what we would think of as modern human beings.&nbsp;</p>
</li>
<li><p>Pastor Michael Gulker and philosopher James Smith, leading a large team from The Colossian Forum, ask a related question: if humanity emerged from non-human primates—as genetic, biological, and archaeological evidence seems to suggest—then what are the implications for Christian theology’s traditional account of origins, including both the origin of humanity and the origin of sin?&nbsp;</p>
</li>
<li><p>Biologist Dennis Venema of Trinity Western University and New Testament scholar Scot McKnight of Northern Seminary will write a book on the evidence for evolution and population genetics, with informed theological reflection on how these issues interact with orthodox Christianity.</p>
</li>
<li><p>Biologist David Wilcox of Eastern University will develop an updated model of human identity which reflects the complex recent scientific advances in genetics and paleoanthropology and yet is sensitive to theological concerns.&nbsp;&nbsp;</p>
</li>
</ul>

<p>These are just a few of the scholarly awards; check out the <a href="/ecf/grantees">Grantees page</a> for full descriptions of all Track 1 and Track 2 projects.</p>

<p>All projects have translational potential, but Track 3 projects are designed to meet the needs of a particular constituency within the evangelical church. These projects run the gamut from ethics to education to media production to ministry resources. &nbsp;Some examples include:</p>

<ul>
<li><p>Theologian Lee Camp of Lipscomb University will produce “The Questions in Monkey Town,” an episode of Tokens, a live variety show that features musical performances, comedic sketches, brief interpretive monologues, and dialog with authors and scholars. The episode will be performed and filmed on the site of the famous Scopes Trial in Dayton, Tennessee.</p>
</li>
<li><p>Chaplain Joshua Hayashi and Educator Diane Sweeney of the Punahou School in Hawaii will lead a team to produce multimedia curricula aimed at helping high school students connect with their biology curricula and, at the same time, deepen their Christian faith.</p>
</li>
<li><p>Physics teacher and pastor Benoît Hébert of Science et Foi Chrétienne in France will lead an international, multi-denominational team of French speaking Evangelical scientists, pastors and church leaders to produce a large number of resources on evolutionary creation.</p>
</li>
<li><p>Pastor Seung-Hwan Kim of Grace Truth Community Church, a Southern Baptist church in Cambridge, Massachusetts, will produce teaching and preaching materials about evolution for church leaders.</p>
</li>
<li><p>President Gregory Wolfe and Director of Resource Development for IMAGE will gather artists and writers of faith whose work explores the dialogue between evolutionary science and faith practice, convening a conversation between them and scientists, theologians, and church leaders in private and public conferences.</p>
</li>
</ul>

<p>Again, this is just a taste of the diversity of Track 3 projects. Read more about each project on the <a href="/ecf/grantees">Grantees page</a>. You can look forward to an incredible variety of resources coming out of the ECF program, many of which will be featured right here on the BioLogos Forum.</p>
]]></content:encoded>
        <pubDate>Wed, 13 Feb 13 05:25:03 -0800</pubDate>
        <dc:creator>Kathryn Applegate</dc:creator>
        <!--<dc:date>Feb 13, 2013 05:25</dc:date>-->
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        <title>Where are the Transitional Fossils?</title>
        <link>http://biologos.org/blog/where&#45;are&#45;the&#45;transitional&#45;fossils?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/where&#45;are&#45;the&#45;transitional&#45;fossils?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>A common argument leveled against the theory of evolution is that scientists have not been able to produce transitional fossils that show the change of one species into another.  In this podcast, we address a common misconception about what transitional fossils actually are.</description>
        <content:encoded><![CDATA[<p align="center"><iframe src="http://player.vimeo.com/video/31875051?title=0&amp;byline=0&amp;portrait=0" width="570" height="428" frameborder="0" webkitAllowFullScreen allowFullScreen></iframe></p>

<p>A common argument leveled against the theory of evolution is that scientists have not been able to produce the expected transitional fossils that show the change of one species into another. If evolution were true, wouldn’t there be instances of clear intermediary species, like, for example, a species that was half whale and half hippo to show the transition between those two? In this BioLogos podcast, Kelsey Luoma addresses this misconception about what a transitional fossil actually is. Rather than a mix between two related species, transitional fossils point back to the common ancestors that modern species share. The fact is that the number of transitional species is massive and it grows with each passing year.  Given the rarity with which organisms are actually fossilized, the amazing thing is actually the completeness of the fossil record, not its incompleteness.  The transitional species story strongly supports, and certainly does not disprove, evolutionary theory. <sup>1</sup></p>

<p class="date">1. To hear the full audio clips which have been referenced go to:</p>
<ul><li><a href="http://www.youtube.com/watch?v=X6EmOQLf25s&feature=BFa&list=PLACF41F3DDBCA4565&lf=results_video&noredirect=1" target="_blank">Rational Response Debate with Kirk Cameron (from Way of the Masters)</a></li>
<li><a href="http://www.youtube.com/watch?v=FN9wyn9xVko&feature=related" target="_blank">Behind the Scenes with Dr. Neil Shubin (from Cincinnati Museum Center)</a></li>
<li><a href="http://www.youtube.com/watch?v=fVNXXLLUYFM' target="_blank">Mark Norell Publishes New Archaeopteryx Findings (from American Museum of Natural Sciences)</a></li>
<li><a href="http://www.youtube.com/watch?v=VmtDGjfMajM" target="_blank">Texas A&M Professor Discusses Findings of Autralopithecus Sediba and its Relationship to Humans (from Texas A&M University)</a></li>
<li>Intro/outro music composed by Martin Minor (<a href="http://www.looperman.com/users/profile/159051" target="_blank">Minor2Go</a>).</li> </ul> </p>

<p><strong>An audio only version of the podcast can be downloaded <a href="http://biologos.org/uploads/resources/fossil_podcast_final.mp3" target="_blank">here</a>.</strong></p>
]]></content:encoded>
        <pubDate>Fri, 01 Feb 13 08:57:28 -0800</pubDate>
        <dc:creator>Kelsey Luoma</dc:creator>
        <!--<dc:date>Feb 01, 2013 08:57</dc:date>-->
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        <title>Awe in Science</title>
        <link>http://biologos.org/blog/awe&#45;in&#45;science?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/awe&#45;in&#45;science?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>If we can understand the experiences of the people who work every day in the lab, our dialogues concerning science and religion will be far more fruitful.</description>
        <content:encoded><![CDATA[<blockquote>You must have experienced it, too - one is almost frightened in front of the simplicity and compactness of the interconnections that nature all of a sudden spreads before him and for which he was not in the least prepared.</blockquote>
<p style="text-align:right;"><strong>Werner Heisenberg, in a letter to Albert Einstein<sup>1</sup></strong></p>

<blockquote>For many people, science invites awe and religion invites insight. When awe and insight engage, science-and-religion happens.</blockquote>
<p style="text-align:right;"><strong>Ron Cole-Turner<sup>2</sup></strong></p>

<p>If we can understand the experiences of the people who work every day in the lab, our dialogues concerning science and religion will be far more fruitful than they would be otherwise. I realised this when someone recently asked me what the highlights had been during my own time as a biologist. I explained that what I appreciated most was the privilege of experiencing science first-hand. My horizons have been expanded, and I now have a better understanding of how vast and complex the natural world is. Appreciating the grandeur of the universe seems to be a universal for humankind, including research scientists in their own peculiar way. Everyone has something to add to a conversation about experiences of awe, as I discovered when I blogged on it recently and invited a number of friends and former colleagues to comment. This sense of awe is a perfect starting point for discussions of science and theology.</p>

<h3>Life in the Laboratory</h3>
<p>I had always loved finding out how things work, and that was one of the reasons why I chose biology, but actually working ‘at the coal face’ was an eye opener. Living organisms are extremely complicated, so one has to choose only a tiny part of an organism to study: maybe a single gene or a feature of its behaviour. It can take years to understand just one aspect of that tiny part in enough depth to be able to publish an academic paper about it. Experienced scientists describe how the sum of human knowledge is so small as to be insignificant in comparison to what is out there, and I can now appreciate that a little bit. I can also appreciate what fun it is to survey all that un-knowledge, grab a bit of it and try to figure it out. </p>

<p>In the world outside of the lab we hear the headlines about new discoveries, but we have no idea what is behind that one-liner. In reality the story of a discovery in biology may well have started with a graduate student who nervously began their new project, a more experienced scientist who sacrificed precious time to train and supervise them, and the lab head who looked over the data every now and then. There would have been long days and nights in the lab and many false turns before the first piece of promising data emerged. No doubt there were anxious re-runs of experiments to confirm the results, and moments of elation as things started to make sense. The work would have been presented to critical colleagues who suggested further experiments. Frustrating months would have been spent generating the final pieces of data, weeks bent over a computer writing a dense and meticulously referenced paper, submission to a journal, the referees’ criticisms, a few more experiments, resubmission, and a long wait. Finally the paper was accepted and the whole research group joined in the celebration. And this is only the simplest possible version of events – the process of producing successful research can involve large numbers of people over several years, international collaborations, promising leads that go stale, and surprising results from unexpected places. </p>

<p>The ‘real world’ of science is a million miles away from the debates on science and religion that happen in churches, universities and schools throughout the world. Behind every piece of research is a team of people representing different faiths and belief systems, a variety of cultures, social backgrounds and personality types. Perhaps scientists are all a little crazy (who would put in the hours otherwise?), but they’re definitely all motivated in different ways. </p>

<p>The factors that attract people to science are many, though inspiring and supportive parents or teachers can play a large part. The reasons why individuals decide to stick with research, despite all the demands and uncertainties that a life in science brings, are interesting and at times surprising. There is the fascination of understanding the natural world, the value of original research, the prospect of new technologies further down the line, and the privilege of making new discoveries. There is also the opportunity to ask new questions, and the immense satisfaction when things come together and begin to make sense. So far, so predictable. More unexpected drivers are the enjoyable process of tinkering with experimental systems, the opportunity to exercise great creativity, the beauty of scientific data, and a feeling of immense awe when one gets a rare insight into the way the world operates. The rewards for doing science range from the utilitarian to the downright spiritual. </p>

<h3>Awe in Science </h3>
<p>Awe is an important part of the experience of science – one could almost say it’s a universal. When a scientist feels awe it is usually in response to something complex, precise, ordered, powerful or beautiful. There is an element of unexpectedness and delight, maybe even respect, fear or reverence. Awe always involves the need for some sort of mental adjustment or accommodation: we need to make room in our internal map of the world for this new and amazing experience. The physicist Werner Heisenberg vividly described this process of taking on board a startling new concept when he wrote of his discovery of atomic energy levels:</p>

<blockquote>“In the first moment I was deeply frightened. I had the feeling that, through the surface of atomic phenomena, I was looking at a deeply lying bottom of remarkable internal beauty. I felt almost giddy at the thought that I had now to probe this wealth of mathematical structures that nature down there had spread before me.”</blockquote>

<p>Moments of awe are the rare high-points in science, both rationally and emotionally. Finally something is understood. That understanding and the new possibilities it opens up are wonderful, and the story is told and retold. Scientists, as you might expect, respond scientifically, with new questions and investigations. But they also respond in other ways depending on their personalities: aesthetically, using visual representations of the data in different ways; philosophically, as they discuss the ethical implications of the research or the surprising intelligibility of the universe; or spiritually, as they try to make sense of those feelings of awe and wonder at the immensity and beauty of the world.</p>

<p>When <a href="http://www.ehecklund.rice.edu/">Elaine Howard Ecklund</a> carried out some research into the beliefs of scientists in elite US universities, she discovered a surprising fact: 20% of the people that she and her research team spoke to were not members of any religious group, but considered themselves spiritual. For some of these scientists the experience of beauty, awe and wonder in their work led them to believe that there is something beyond science – one could perhaps call it ‘transcendent’ – an experience that motivated some of them in their research, their teaching, and their lives outside of the lab. I remember having a conversation with a colleague who had experienced something along these lines, so I’m not surprised to hear that many others feel the same.</p>

<p>According to the scientist-theologian Alister McGrath, experiences of the transcendent might involve a sense of the ‘numinous’ – a feeling that something ‘other’ might be behind what one is seeing. Or perhaps someone might encounter a deep truth about the unity of reality that strikes them in a particular way. Perhaps more common would be a moment of unexpected clarity – what some might call an epiphany – where suddenly things make sense. Experiences that might be called ‘transcendent’ are rare, but they leave a lasting impression.</p>

<p>The language used by many scientists when they describe the process of discovery is of a reality that was always there. Perhaps it’s not surprising that scientists are ‘realists’; they think that there is a real world outside of ourselves that waits to be discovered. Science does not answer the ultimate questions about the universe, but scientists are human beings so we just ask those questions anyway – sometimes looking for answers in unexpected places.</p>

<h3>Spirituality in Science</h3>
<p>At the beginning of this piece I mentioned my growing realisation of the size of the scientist’s task. The seeming inexhaustibility of the created order can be overwhelming, but many see this as something positive. There is so much more to explore. As the Jesuit philosopher Enrico Cantore has said, the mystery of the universe lies not in ignorance, but in dazzling intelligibility. Where do these thoughts of transcendence, reality and mystery lead? For Einstein, they were a religion. A Mind other than our own was somehow responsible for this world that we can make sense of using the language of mathematics. For others, the reality we see in the world leads to ideals that transcend differences of language, culture and religion. </p>

<p>We search for meaning, and we long for more. CS Lewis famously describes the world we live in as a pale reflection of the one to come.<sup>3</sup> For those who already believe in God, what we see in science makes sense. We live in a world that operates according to principles that we can understand and describe mathematically. We can utilize what we find for good or evil (and everything in between), and what we discover is both beautiful and awe-inspiring. William Whewell, the nineteenth-century polymath and Master of Trinity College, Cambridge, said that <em>‘We must find the right thread on which to string the pearls of our observations, so that they disclose their true pattern.’</em></p>

<p>For me, what we see in science is not evidence for God, but works well as a thought experiment. What would you expect if God existed? In the context of faith, science increases my sense of awe and wonder and helps me to worship God in a more genuine way. The Christian songwriter Matt Redman said that we sometimes <em>‘take the extraordinary revelation of God and somehow manage to make Him sound completely ordinary’</em>. Science has the power to expand our horizons and helps us to see how great God is. The dazzling intelligibility of the world increases our humility, as we realise that because we ourselves are a fragile and finite part of the universe, we will never be able to fully grasp what we see in an objective intellectual way.<sup>4</sup> Our response to what we see in the world is rational, emotional and active: worship as well as systematic theology. </p>

<blockquote>The highest mountain peaks and the deepest canyon depths are just tiny echoes of His proclaimed greatness. And the brightest stars above, only the faintest emblems of the full measure of His glory.<sup>5</sup></blockquote>

<h3>Notes</h3>
<p>The main sources for this piece are Enrico Cantore, <em>Scientific Man: The Humanistic Significance of Science</em> (New York: ISH Publications, 1977); Olaf Pedersen, “Christian belief and the fascination of science” in <em>Physics, Philosophy and Theology: A Common Quest for Understanding</em>, Eds. Robert John Russell, William R. Stoeger & George V. Coyne. (Vatican City State: Vatican Observatory, 1988), 125-140.; Alister McGrath, <em>The Open Secret</em> (Oxford: Blackwell, 2008).</p>

<p>1.  From Enrico Cantore, <em>Scientific Man: The Humanistic Significance of Science</em> (New York: ISH Publications, 1977)</p>
<p>2.  Ron Cole-Turner, ‘What Do You Find Most Interesting or Surprising About the S&R Discussion Today?’, <em>Science & Religion Today</em>, 21st May 2012, http://www.scienceandreligiontoday.com/2012/05/21/what-do-you-find-most-interesting-or-surprising-about-the-sr-discussion-today-ron-cole-turner-answers/ </p>
<p>3.  In C.S. Lewis, <em>The Weight of Glory</em>. SPCK, 1942</p>
<p>4.  Jame Schaefer, <em>Theological Foundations for Environmental Ethics: Reconstructing Patristic and Medieval Concepts</em> (Washington, DC: Georgetown University Press, 2009), Chapter 1.</p>
<p>5.  Matt Redman, <em>Facedown</em> (Eastbourne: Survivor, 2004).</p>]]></content:encoded>
        <pubDate>Thu, 10 Jan 13 04:00:08 -0800</pubDate>
        <dc:creator>Ruth Bancewicz</dc:creator>
        <!--<dc:date>Jan 10, 2013 04:00</dc:date>-->
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        <title>Series: Harmonizing Science, Ethics, and Praxis</title>
        <link>http://biologos.org/blog/series/harmonizing&#45;science&#45;ethics&#45;and&#45;praxis?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/harmonizing&#45;science&#45;ethics&#45;and&#45;praxis?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In this three&#45;part series, Cal DeWitt offers insights and examples of why science and ethics must work together to help us make informed, practical decisions within our society.  DeWitt’s science&#45;ethics&#45;praxis model provides a framework by which we can live more effectively as God’s stewards.</description>
        <content:encoded><![CDATA[<h3>The Science-Ethics-Praxis Triad</h3>

<p>Today, as I write, I am no longer in the desert of southern California, nor in the beech-maple forest of New Hampshire, but on a glacial drumlin in Waubesa Wetlands—a large marsh four miles south of Madison, Wisconsin. Here Ruth and I have our home, and here I study creatures whose watery habitats my neighbors and I have worked to save from eventual destruction. While my desert study site now is covered by a city where people live alone in the land—absent the desert creatures—my wetland study site remains occupied by all kinds of native plants and animals. Embracing it is the Town of Dunn, whose land stewardship plan helps people understand, serve, and maintain this and the other ecosystems. Our town stewardship plan encourages restoration of the landscape, protects agricultural lands, and strives to transmit an intergenerational heritage of secure and wholesome homes, livelihoods, and habitats for the animals, plants, and people that live here. We live largely in harmony and accord. </p>

<p>House-building on slabs poured onto desert sands first alerted me to the question of praxis, the third point on the napkin. But it was later, in my work as organizer of the Waubesa Wetlands Scientific and Agricultural Preserve, and as supervisor and later as chair of the Town of Dunn, that I came to realize that science and ethics do no earthly good unless put into practice. In serving my town, I came to apply what I had learned in the desert: praxis uninformed by science and ethics usually creates more problems than are solved.</p>

<p>“How do you put it all together?” those students in New Hampshire wanted to know. For me, it was building a framework for stewardship that simultaneously considered the questions “How does the world work?” “What is right?” and “What then must we do?” This science-ethics-praxis triad is a framework for living, for learning, for teaching, and most importantly for acting. It is a framework for stewardship.</p>

<p>In order to live and act rightly in the world, we need to know how the world works. We need to know how the systems that sustain us work, and how we interact with them. Without such knowledge we could drown in a flash flood, have our homes undercut by desert winds, cross the street in the path of an oncoming car, or get sick from consuming foods with toxic ingredients. As human beings develop more and more of the world, and as the reach of human actions extends regionally and globally, our knowledge must increase accordingly. This knowledge is not limited to what we acquire from a formal education; it also includes the knowledge we gain from family and friends, and from experience and experiment. In order to live and act rightly in the world, we need to know how the world works.</p>

<p>In order to live and act rightly in the world, we need to know what we ought to do. A century ago, this question was addressed in many colleges across America in a course for graduating seniors on moral philosophy. The purpose of this course was to convict students that they should apply their knowledge for the pursuit of good instead of pursuing self at others’ expense. At my university, this aspect of college education is expressed in a quotation from Abraham Lincoln carved in stone on a bench behind Lincoln’s statue at the top of Bascom Hill: “Let us have faith that right makes might, and in that faith, dare to do our duty.” The question “What is right?” is represented by the ethics corner of our triad. Moving directly from the Science corner to the praxis corner, or from the ethics corner to the praxis corner, proves problematic, even disastrous. Consider the result of going from knowledge of nuclear fission (science) directly to producing and dropping an atomic bomb (praxis), or moving from the belief that death is bad (ethics) to removing dead wood from forests (praxis); both are examples of these disastrous shortcuts.</p>

<p class="caption-left"><img src="http://biologos.org/uploads/static-content/DeWitt_Cover_thumb.jpg" alt="" height="270" width="200"  /></p>

<p>But knowing the science and observing the ethics of this stewardship framework does absolutely no good if it is not put into practice—placed into service. By themselves, the very best science and the most substantial ethics are no substitutes for action. We need to act appropriately and deliberately in the light of scientific and ethical knowledge. Praxis by itself, without being grounded in science and ethics, results in mere activism—activism that is unlikely to do good and that may produce harm. All three corners of the triad are essential—but not by themselves. Taken together and working interactively, they provide a framework for stewardship.</p>

<p>But will these three operate in dynamic interaction? Will they interact in ways that preserve and achieve the integrity of human life and the environment? The answer depends on what we know and understand about ourselves and the world (science), what we believe we should do (ethics), and what we in fact do, and how we respond to our successes and failures (praxis). It depends on our will, our motivation, our determination, and our dedication to strive for a harmonious world of creatures before their Creator. What might make us strive for such a world?</p>

<p class="intro">Part 3 explores the challenge of translating ideals into concrete actions.</p>
]]></content:encoded>
        <pubDate>Wed, 09 Jan 13 06:00:09 -0800</pubDate>
        <dc:creator>Calvin DeWitt</dc:creator>
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        <title>Introducing the BioLogos Navigator</title>
        <link>http://biologos.org/blog/introducing&#45;the&#45;biologos&#45;navigator?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/introducing&#45;the&#45;biologos&#45;navigator?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Part of BioLogos mission is to show how all things hold together in Christ—to show how a Christian worldview integrates the knowledge we have of God through the Scriptures with the knowledge we have of God through the other areas in which He reveals himself as Creator and Redeemer.</description>
        <content:encoded><![CDATA[<p>When we at BioLogos affirm that, “all things hold together in Christ,” what do we mean?  In short, we believe that there is no aspect of creation or of human experience that does not fall under the sovereignty and authority of God, and that He does not claim for himself and intend for redemption.  After all, at his resurrection, Jesus himself said, “All authority in heaven and on earth has been given to me” (Matthew 28:18). But more than just proclaiming God’s sovereignty over creation, we believe that God is revealing himself in every aspect of creation, as well—that led by the Holy Spirit, we will find pointers to God wherever we turn our gaze.  Christian knowledge, therefore, is not limited to the study of the Scriptures or of Church History, but includes the study of the natural world and of all of human culture, as well.  In fact, to fully appreciate God’s abundant grace and providence, we need to be looking to all of these domains of knowledge as domains of revelation, too. </p>

<p>Part of the BioLogos mission, then, is to show <em>how</em> all things hold together in Christ—to show how a Christian worldview integrates the knowledge we have of God through the Scriptures with the knowledge we have of God through the other areas in which he reveals himself as Creator and Redeemer.  Our website contains a wealth of Christian scholarship in a wide range of fields—from biology, to cosmology, to mathematics, to Biblical studies, to history, to theology—all demonstrating that the best contemporary science is compatible with Biblical Christian faith. But today we introduce a new tool—the BioLogos Navigator—to make these posts more accessible, and to show how they inter-relate (see sidebar on the right).  </p>

<p>Modeled on the astrolabes that early astronomers and sailors used to orient themselves under the heavens, our Navigator makes the cross of Christ the starting point by which we understand the cosmos.  Each of the four arms of the cross represents one of the domains of knowledge and experience through which God reveals himself to the world: Scripture, the Church, Nature and Culture.  These domains are not in opposition to each other, but are complementary and inter-related areas through which we can recognize God at work in the world. Linking these four domains is a network of specific topics relevant to the science and faith conversation.  Their arrangement suggests how each relates to the four domains but also to teach other.  Clicking on an individual topic tag highlights not only that topic, but other topics that are linked to it—sometimes in unexpected ways.</p>

<p>Clicking a topic tag a second time takes you to the Topic Landing page: a curated selection of the best resources on that subject from the BioLogos archives.  (The image above shows the <em><a href="http://biologos.org/navigator/Christianity+&+Science+-+Then+and+Now">Christianity & Science—Then and Now</a></em> Landing page, complete with Navigator and highlighted tags.) At the bottom of each page is a link to our Resource Finder, where you can investigate additional materials on that topic, as well. By exploring the relationships between the topics on the Navigator itself, and by delving deep into each topic via the resources presented on the landing pages, readers can focus on specific aspects of the harmony between science and Christian faith while also getting the wide view of God’s providential work in all things in the heavens and on the earth. </p>

<p>In the coming days and weeks, the BioLogos Navigator will be more fully integrated into the rest of the site, accessible directly from the Forum homepage and from the Resources dropdown list at the top of every page.  We’ll also be including features that help place each blog post on the “knowledge map” defined by the domains and topic tags.  Finally, the Topic Pages will also be periodically updated with the latest and best new materials in each topic. In the meantime, <strong>you can access the Navigator by clicking anywhere on the small image in the sidebar, above</strong>, and find a link to this post at the upper right corner of our homepage.  So take some time to explore our site with this new tool, which we think will to help orient our readers in the science and faith conversation, while always pointing to Jesus, the Christ, through whom all things were made.</p><br />]]></content:encoded>
        <pubDate>Thu, 27 Dec 12 06:19:49 -0800</pubDate>
        <dc:creator>Mark Sprinkle</dc:creator>
        <!--<dc:date>Dec 27, 2012 06:19</dc:date>-->
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        <title>Katharine Hayhoe: Evangelical Christian, Climate Scientist</title>
        <link>http://biologos.org/blog/kathryn&#45;hayhoe&#45;evangelical&#45;christians&#45;climate&#45;scientist?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/kathryn&#45;hayhoe&#45;evangelical&#45;christians&#45;climate&#45;scientist?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>As an Evangelical and a scientist, Katharine Hayhoe is already a member of a rare breed.  As a climate change researcher who is also married to an evangelical Christian pastor, she is nearly one of a kind.</description>
        <content:encoded><![CDATA[<p>As an evangelical scientist, Katharine Hayhoe is already a member of a rare breed.  As a climate change researcher who is also married to an evangelical Christian pastor, she is nearly one of a kind.  In these three videos, Hayhoe divulges her beliefs about God, climate change, and the difficulties of believing in both those things.</p>

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<p>The first video, “10 Questions with Katherine Hayhoe”, introduces the scientist in a brief and lighthearted interview.  Hayhoe is presented with 10 questions concerning her personal life and beliefs.  When asked, she explains that one thing people should know about Christianity is that having a relationship with the God of the universe is one of the most incredible experiences that a person can have. As the video unfolds, the viewer quickly begins to realize that, despite her unique profession of two seemingly incompatible beliefs, Hayhoe is a remarkably sane and “normal” individual.  Her role model, she explains, is her father-- the person who first introduced her to science and showed her that it could be “really cool”.  On a more serious note, the scientist admits that being both a scientist and a Christian can be difficult.  The most frustrating thing about her position, she says, is the amount of disinformation which is targeted at her very own Christian community.</p>
 
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<p>In the second video, “Climate Change Evangelist”, Katharine Hayhoe delves into deeper discussion of the perceived conflict between climate change and Christian faith.  She explains that admitting her identity as a Christian scientist can be uncomfortable.  Since evangelicals are the targets of much disinformation concerning science in general -- and specifically the science surrounding climate change -- many people in the church have a misguided view of the subject and do not look kindly at her career choice.  One woman encountered by Hayhoe at a church in Texas, for example, believed that global warming was a lie taught in schools to mislead her children.  In an effort to realign misguided views like these, Katharine Hayhoe and her husband wrote a book addressing the deep-rooted emotions often associated with climate change.  People fear that addressing the climate issue will bring forth changes in the economy and uproot their way of life.  However, Hayhoe encourages her viewers to act out of love, as the Bible calls us to do, rather than out of fear.  Acting out of love inspires us to consider the poor and disadvantaged people around the globe when we respond to the reality of a changing climate.</p>

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<p>In the final segment of this three part video montage, Hayhoe addresses the question of what climate change means. Specifically, she is concerned about how global warming affects people on a personal level.  While global warming generally brings to mind melting ice caps and polar bears, its implications are far more widespread, affecting the lives of everyone around the world- from cotton farmers in Texas to public health workers in Chicago.  If nothing is done to change current emission levels, the number of days per year which exceed 100 degrees Fahrenheit, for example, will begin to increase dramatically, and if emissions are increased, many areas will even develop extreme conditions like those seen currently in Death Valley.  Hayhoe’s goal is to demonstrate clearly that the only way to preserve the world for future generations is to significantly reduce dependence on inefficient means of getting energy and instead transition to cleaner renewable energy sources.</p>

<p><strong>Editor's Note: These videos first appeared on the Nova program <a href="http://www.pbs.org/wgbh/nova/secretlife/scientists/katharine-hayhoe/" target="_blank">"The Secret Life of Scientists & Engineers"</a>.</strong></p>]]></content:encoded>
        <pubDate>Fri, 09 Nov 12 05:00:21 -0800</pubDate>
        <dc:creator>Katharine Hayhoe</dc:creator>
        <!--<dc:date>Nov 09, 2012 05:00</dc:date>-->
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        <title>Can Science Ever Know Enough?</title>
        <link>http://biologos.org/blog/can&#45;science&#45;ever&#45;know&#45;enough?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/can&#45;science&#45;ever&#45;know&#45;enough?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>To say something is poetic is not to declare it ultimately untrue, futile and meaningless—it is to say it is more profound and meaningful and true than many other modes of expression.</description>
        <content:encoded><![CDATA[ 
<blockquote><p>There are more things in heaven and earth, Horatio, than are dreamt of in your philosophy.</p>
<p style="float:right;"><strong>—Hamlet Act 1, Scene 5</strong></p></blockquote>

<p>&nbsp;</p>

<p>We live in a world driven by the gods of economics, technology and science.  Particularly in a time of economic austerity, it is tempting to see the arts or humanities as an optional “extra”—a happy by-product of those true engines of society when they are running smoothly. But in this article we will look at how a biblically informed worldview might turn this perspective on its head, and what the humanities might have to tell us about the present contours of the science and faith conversation.</p>

<p>In his iconic 1959 Rede lecture, “The Two Cultures,” CP Snow noted the dysfunctional relationship between science and the humanities, arguing that the situation is principally the result of our educational system in the West. Ken Arnold, from the medicine and arts focused <a href="http://www.wellcomecollection.org/about-us.aspx">Wellcome Collection</a> in London, believes that the split continues today, but with the further extension that </p>

<blockquote>In emerging countries . . .  amongst the middle classes there is a strong pressure to join the ranks of doctors and scientists and engineers because they see that as the place where future economies are growing. . . . In some ways you could almost begin to feel sorry for the arts and the humanities because they seem to be worth less than the sciences.<sup>1</sup></blockquote>

<p>Is Protestant Christianity also peculiarly prone to such thinking? A skepticism of art in religious spaces as a result of iconoclasm and the reformation, combined with a proud history of the protestant work ethic, economic success, and a profound influence on the history of science, might lead Protestants to be more inclined towards the sciences and technology than to the arts. However, there are more corrosive reasons that science has usurped the humanities in our culture than merely educational or theological bias.</p>

<p>In the early 20th century, logical positivists regarded the humanities as expressions merely of our inner states and desires, but having nothing to do with objective reality. Such imperialistic claims to knowledge denied that other knowledge claims referred to any true reality, and were therefore not really forms of knowledge at all. Bertrand Russell writes, </p>

<blockquote>But if there is a world which is not physical, or not in space-time, it may have a structure which we can never hope to express or to know … Perhaps that is why we know so much physics and so little of anything else.<sup>2</sup></blockquote>

<p>Christian scientists are of course very sensitive to this, and work hard to explain that science cannot answer questions of ultimate meaning or the existence of God, which are beyond the scope of science.  Often, this line of thinking can be narrow in focus, delineating the limits of the science, and naming those assumptions made by science that cannot be justified empirically. Such arguments can be very fruitful within this narrow context, but we should not be led into thinking that our true perception of reality is limited to such analytic and evidential approaches.  There are fields of inquiry that science isn’t able to explain (such as metaphysical judgments, ethics, and beauty), and even our confidence in mathematics— upon which so much of science itself is based—rests upon assumptions that cannot be experimentally demonstrated. </p>

<h3>The human condition</h3>

<p>Mathematics and the sciences do seem to provide tools by which we are able to perceive the external world and its regularities. However, the arts and humanities, too, are a way of understanding reality, and they tell us less about external reality than the internal human condition. The problem is that the ‘human condition’ seems to have been relegated by many to the realm of mere desire and subjective feeling and, therefore, not <em>reality</em>. </p> 

<p>The modernist account of science is that, through our reason, we are somehow able to get outside of nature and describe it objectively. The biblical account, though, has human beings as part of the created order, and so embedded in nature—made from the dust of the earth.  Given that, human thought life is also part of the natural world, even despite the fact that it is not best described by the sciences.</p>

<p>The works of Shakespeare, for instance, are part of the created order, as are the poems of Wordsworth, the sculptures of Michaelangelo, and the music of Bach, not to mention children’s nursery rhymes, home decoration, and humming tunes whilst waiting for the bus. As C. S. Lewis wrote, "This is not panache, it is our nature." <sup>3</sup></p>  

<p>A little reflection on life reveals something very strange going on here. Somehow, the mythic ‘war’ between science and religion has become the dominant battleground for defending the Christian faith, and competing explanations of the material world are used as apologetic weapons.  But the reality is that science plays a peripheral role in our experience of life, not least our life as Christians. Of course that is not to deny the enormous impact of science on the material conditions of our lives, or the prevalence of the products of science. Instead, it is to observe that science plays a facilitatatory role, enabling us to carry out the real core business of our lives, which does not revolve around science. Cars, trains and airplanes are modes of transport to take us to work, or to see family, or go on holiday. Social media provide another way of being in relationship with people. Health services are not an end in themselves, but aim to make people well, so that they can get on with their lives. Why then, when life is not about science, does science dominate our way of thinking about life?</p>

<p>In focusing so much energy on opposing positivism are we not being inadvertently drawn into a positivist way of thinking, that science and material explanations of things are, indeed, our basic reality, what is ultimately true?</p> 

<h3>A biblical model</h3>

<p>“We feel,” wrote the philosopher Ludwig Wittgenstein, “that even when all possible scientific questions have been answered, the problems of life remain completely untouched.” <sup>4</sup> Likewise, philosopher Susanne Langer questions any philosophy which claims to be able to explain everything:</p>

<blockquote>Philosophers in every age have attempted to give an account of as much experience as they could. Some have indeed pretended that what they could not explain did not exist; but all the great philosophers have allowed for more than they could explain, and have, therefore, signed beforehand, if not dated, the death-warrant of their philosophies.<sup>5</sup></blockquote> 

<p>Fortunately, the Bible preserves us from total positivist oblivion. There are a great many types of literature represented in the Bible, with the notable exception of scientific writing. If we long to be able to express our deepest emotions, we have the psalms; if we are looking for wise advice, we have the proverbs; if philosophical reflection, Ecclesiastes. There is poetry, song, history, biography, but there is no science. In addition, the Bible refers to the use of the visual arts in, for example, the designs of the tabernacle and temple.  The Bible does seem to think the arts and humanities are fundamental for human life, but it doesn’t seem to think that what we think the physical world is constructed of matters much at all.</p>

<p>Do we sometimes read the Bible more like a science textbook than a novel or a poem?  Most will agree that each type of literature needs to be read in its own way, but lip-service to that idea notwithstanding, recent arguments prove that it is still possible to read a poem with a scientific mentality—looking out for the ‘facts.’  Is that because we have too high a view of science, or because we have too low a view of the humanities? To say something is poetic is not to declare it ultimately untrue, futile and meaningless—it is to say it is more profound and meaningful and true than many other modes of expression.</p>

<p>According to Langer, part of the problem is the priority that has been accorded to discursive language as the only valid way we have of representing reality to each other.  She observes that a study of symbolism shows us that this is actually only one way humans use to abstract from reality, and in fact, the situation even with discursive language isn’t as simple as has been made out. She notes that our sensory organs mediate our perceptions of the world and are already on the job— formulating, framing the world to us—before our cognitive apparatus gets to work. It must be so, or we would not be able to evaluate the importance of the vast array of sensory data we receive and reality would appear as a blur.</p>

<p>A linguistic symbol carries a concept we associate with it, which in turn denotes a reality. In language there is a commonly agreed definition for each word we use, thus enabling communication. But each person also has associations unique to him or her which color any particular concept. Though such personal associations with words are present all at once, they can only be expressed and communicated one at a time, because language is also sequential.</p>

<p>A picture also acts symbolically, though in a different way. Even something as ‘realistic’ as a photograph is likewise a representation of reality and not the reality itself. It also carries with it layers of meaning which reflect the subjective intentions of the person who took the photograph, and opens up for interpretations and associations of the person ‘reading’ the picture. A picture, though, is not sequential. All the information comes at once, and individual blotches of color carry no significance on their own, but only as part of the whole.</p>

<p>No amount of words could ever describe a picture in full. The number of blotches of color and their relations to each other are vast in their complexity, and one could never read words quickly enough to carry the meaning a picture brings in an instant, even if it warrants a far longer period of contemplation.  Indeed, though we are only speaking here of visual perception, the same is true of our other sensory inputs, too: they all carry knowledge in quite distinct and profound ways, whilst we, in line with the Greeks, have tended to give sight a special place as the most ‘objective’ of our senses.</p>

<p>As we dig down into empirical science and explore the mechanisms by which sights and sounds and textures are transmitted and processed by the brain, we discover that the meaning of the sense-data which we perceive and which we attempt to describe is likewise profoundly limited by the use of words—much less mathematics—and that our science, as such, represents a tiny fraction of reality.</p>

<p>To suggest, then, that science is the only true way of representing reality—as positivism has done—or to exclude the humanities from our world, leaves us without a proper or even adequate means of expressing the significance we attach to even the most mundane day-to-day activities. Science is very good at describing the regularities of the physical world, but the experience of being human is no less part of the real natural world than are the structure of proteins or the movement of planets, and science does not have the appropriate tools to explore our inner worlds.</p>

<p>Nowadays it seems that Christian cultural life has also too-often failed to fully acknowledge other ways of representing reality than materialist science—ironic because this state of affairs is so at odds with the Bible’s model of using the arts and humanities to profoundly explore the human condition.   Perhaps it is time to recover that side of the biblical witness, and remind ourselves that there are more ways of representing the world to each other than positivism has ever dreamt.</p>

<h3>Notes</h3>

<p class="date">1. BBC Radio 4, “The Life Scientific”, Tuesday 25th September 2012.<br />

2. Bertrand Russell, “Philosophy”, New York. W.W.Norton &Co, 1927, page 265, quoted by Susanne K. Langer, <em>Philosophy in a New Key</em>, Harvard University Press, 1979, page 88.<br />

3. C. S. Lewis, “Learning in War Time” in <em>Fernseed and Elephants and other Essays on Christianity</em>, Fontana, 1975, page 28.<br />

4. Ludwig Wittgenstein, <em>Tractatus Logico-Philosophicus</em>. Routledge and Kegan Paul, 1951, page 187.<br />

5. Susanne K. Langer, <em>Philosophy in a New Key: A Study in the Symbolism of Reason, Rite and Art</em>. Harvard University Press, 1979, p 5.</p>]]></content:encoded>
        <pubDate>Mon, 29 Oct 12 04:59:52 -0700</pubDate>
        <dc:creator>James May</dc:creator>
        <!--<dc:date>Oct 29, 2012 04:59</dc:date>-->
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        <title>Series: Decoding ENCODE</title>
        <link>http://biologos.org/blog/series/decoding&#45;encode&#45;series?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/decoding&#45;encode&#45;series?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>The BioLogos Foundation explains to the findings of the Encyclopedia of DNA Elements (ENCODE) project and responds to the claims that its discoveries challenge the theory of evolution, especially regarding so&#45;called &quot;junk DNA&quot;.</description>
        <content:encoded><![CDATA[<p>In 2003, under the leadership of BioLogos founder Francis Collins, the Human Genome Project sequenced the full human genome, showing us for the first time the order of the 3.2 billion chemical “bases” that make up the rungs of DNA’s double helix structure. The project identified and mapped 23,000 genes that code for proteins, but those genes make up less than 2% of the total sequence—far fewer than originally predicted, given the complexity of humans. While many non-coding sequences were identified as having function as well, there were still vast swaths of the genome that had no obvious function. In fact, what was known about certain classes of sequences suggested that they had no functional role for humans—such as the sequences identified as either transposons or transposon fragments that make up nearly half of our genome. These sorts of sequences seemed to fit into what was popularly known as the “junk DNA” category. </p>

<p>With the complete genome sequence in hand, we knew the sequence and location of our genes, but what we didn’t know was how all those genes are regulated: how do the trillions of cells in our bodies know when to turn on or off all those genes?  How do the hundreds of distinct cell types develop and function together, when they are all running on the same DNA “operating system?”  </p>
<p>That’s where the ENCODE (short for Encyclopedia of DNA Elements) project comes in. Launched in September 2003, shortly after the announced completion of the Human Genome Project, the goal of the ENCODE project is “to build a comprehensive parts list of functional elements in the human genome, including elements that act at the protein and RNA levels, and regulatory elements that control cells and circumstances in which a gene is active.” In other words, the project seeks to understand how the genome “works.”</p>

<p>Early this month, researchers from ENCODE released more than thirty papers presenting their findings. During a <em>Science</em> magazine <a href="http://news.sciencemag.org/sciencenow/2012/09/live-chat-figuring-out-what-dna.html">online chat</a>, the project’s data coordinator, Ewan Birney, explained the outcome:</p>

<blockquote>The ENCODE project aimed to start our understanding of how the human genome works. We know that (nearly) all the information that determines a human is in the genome, as we all start off as single cell with this DNA. However, we had a patchy understanding of how it works, in particular away from protein coding genes.<br /><br />

To work out how the genome works, we used the fact there are many tiny machines (proteins and RNA - RNA is very like DNA) in each of our cells which know how to "read" parts of the genome. By monitoring where these little molecular machines are on the genome, or how parts of the DNA are copied into RNA (there are quite a few different types of RNA as well), we start to gain some insight into the genome.<br /><br />

We did many such experiments, across different cell types (eg, one cell type was very similar to a liver cell type; another was very similar to a white blood cell). This way not only can we see what is similar, we can also see differences between these cell types.<br /><br />

There is a lot more to get to know and understand here - this is definitely closer to the start than the end. But it is a substantial amount of data, and analysis, to start on this journey.</blockquote>

<p>According to the abstract of one of the <a href="http://www.nature.com/nature/journal/v489/n7414/full/nature11247.html">lead papers</a> from <em>Nature</em>, this extraordinary glut of data “enabled us to assign biochemical functions for 80% of the genome, in particular outside of the well-studied protein-coding regions.”  Only 2% of the genome codes for proteins, but 80% or more has <em>some</em> biochemical function.  As a <em>Science</em> <a href="http://www.sciencemag.org/content/337/6099/1159">news article</a> put it, these 30 papers “sound the death knell for the idea that our DNA is mostly littered with useless bases.”</p>

<p>The pro-Intelligent Design organization The Discovery Institute has heralded the discovery as the “demise of junk DNA.”  Casey Luskin writes for their <a href="http://www.evolutionnews.org/2012/09/junk_no_more_en_1064001.html">blog</a> <em>Evolution News</em>:</p>

<blockquote>Let's simply observe that it provides a stunning vindication of the prediction of intelligent design that the genome will turn out to have mass functionality for so-called "junk" DNA. ENCODE researchers use words like "surprising" or "unprecedented." They talk about of how "human DNA is a lot more active than we expected." But under an intelligent design paradigm, none of this is surprising. In fact, it is exactly what ID predicted.</blockquote>

<p>The extent to which the ENCODE project been able to identify function has been surprising—even exhilarating—though scientists have for some time been getting glimpses of the many ways in which segments of DNA can be “active.”  Even in 1970 biologists knew that some non-coding DNA had function, and by 2003 there was a large body of work demonstrating that many non-coding elements acted as promoters, enhancers, insulators, and so on. Indeed, in recent years many have come to appreciate the fact that “junk” was never really an appropriate metaphor in the first place.   Still, because sequencing of multiple genomes has shed such extraordinary light on key evolutionary mechanisms, many geneticists have focused on function primarily in terms of which regions do or do not contribute to the evolutionary fitness of their host, rather than whether they were merely "doing something" biochemically.  What the impressive ENCODE project has done is open a treasure trove of new information that can only accelerate the pace at which researchers are able to explore the incredible subtlety and complexity of DNA, and refine the very concept of “functionality.” </p>

<p>So with all this in mind, is ENCODE a stunning victory for ID, as Luskin believes? Bryan College biologist Todd Wood thinks not.  He <a href="http://toddcwood.blogspot.co.uk/2012/09/everyones-excited-about-encode.html">writes</a>, “I don't think that function equates to design, nor do I think that design requires or predicts function.  They're not the same thing… my understanding of function does not require me to hypothesize God (or an anonymous designer, if you must) as the proximal cause.”  </p>

<p>We agree.  Indeed we would go on to say that evolution and design are not mutually exclusive.  So while finding function is not sufficient to prove design, recognizing that function has arisen by way of evolution does not indicate that God was not at work.  We at BioLogos believe God providentially works out his purposes—his designs—<em>through</em> the elegant processes of evolution, not in opposition to them.</p>

<p>Amazing as the new data are, it only strengthens and enhances our evidence for evolution.  While much of the genome is “doing something” biochemically, it is still likely that the majority of the sequence is evolutionarily neutral (Senior Fellow Dennis Venema discusses the evidence for this “neutrality” in a <a href="http://biologos.org/blog/understanding-evolution-is-there-junk-in-your-genome-part-1">post</a> on our site, including a striking comparison between 29 different mammal genomes and the human genome).  In fact, another  ENCODE researcher participating in the <em>Science</em> magazine chat, John A. Stamatoyannopoulos of the University of Washington School of Medicine, thinks the findings align beautifully with evolutionary theory:
</p>

<blockquote>ENCODE's data provide a unique and powerful window through which to view evolutionary change. We can see those changes directly by lining up the genome sequences of many different organisms -- these line-ups have revealed millions of regions where all the genomes agree, indicating sequences that have been specially preserved by evolution while others have decayed away (ie freely changed their letter codes). We now see that a large proportion of these 'conserved' regions are lighted up by ENCODE annotations, indicating that they are marking spots in the genome that contain important instructions for cell function.</blockquote>

<p>We’ve discussed “junk” DNA previously, including a multi-part series by Dennis Venema, and we’ve received many emails over the past few days asking for our comments on the ENCODE findings. On Monday and Tuesday, Dr. Venema will begin to offer his own thoughts on ENCODE.</p>

<p class="intro">A special thanks goes to Darrel Falk, Mark Sprinkle, Kathryn Applegate, Dennis Venema, and Tom Burnett for their contributions to this post.</p>]]></content:encoded>
        <pubDate>Wed, 26 Sep 12 05:00:35 -0700</pubDate>
        <dc:creator>Stephen Mapes, Dennis Venema</dc:creator>
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        <title>Science and Faith on a Secular Campus</title>
        <link>http://biologos.org/blog/science&#45;and&#45;faith&#45;on&#45;a&#45;secular&#45;campus?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/science&#45;and&#45;faith&#45;on&#45;a&#45;secular&#45;campus?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>While many Christian colleges actively seek to help their students engage issues of faith and science constructively, few secular colleges are active in promoting the conversation. As a professor at a secular school, how can I encourage my students to authentic engagement and dialogue on science and faith issues?</description>
        <content:encoded><![CDATA[<p>As a Christian professor at a science-focused, secular college, I often encounter students wrestling with dissonance between science and faith. The prevailing message of incompatibility comes to them from the popular press, on campus, at home, and even at church. They hear it from scientists, secularists, and Christians. It is in the classroom, casual conversations, and the pulpit. Indeed, according to research published in David Kinnaman’s <em>You Lost Me</em> and <a href="http://biologos.org/blog/six-reasons-young-christians-leave-church" (target="_blank") >previously highlighted</a> at BioLogos, 25% of 18- to 29-year-olds with a Christian background believe that Christianity is anti-science, and 23% have been turned off by the creation-versus-evolution debate. Clearly there is a need to reach this age group.</p>

<p>While many Christian colleges actively seek to help their students engage issues of faith and science constructively, few secular colleges are active in promoting the conversation. So what is a student to do? They may find it difficult to find a visible role model or mentor that they admire or respect both spiritually and intellectually. Christian faculty at secular colleges and universities often do not feel safe publicly revealing their faith (due to a real or imagined hostile campus climate) or feel ill-equipped to tackle intimidating and controversial topics.</p>

<p>I was fortunate as an undergraduate to find professors in my field that shared my faith. Though we never talked about faith and science topics explicitly, their very presence encouraged me to consider being a Christian professor in chemistry. I grew spiritually in college, largely due to the community I found in InterVarsity Christian Fellowship. My beliefs were challenged on occasion, but I did not really engage issues like evolution. Like <a href="http://biologos.org/blog/from-intelligent-design-to-biologos-part-1-early-years" (target="_blank") >Dennis Venema</a>, I was initially attracted to Michael Behe’s <em>Darwin’s Black Box</em> and the Intelligent Design movement. But as I learned more biology as a graduate student and postdoc, I no longer found this position tenable. I was delighted to find Darrel Falk’s <em>Coming to Peace with Science</em> and Ken Miller’s <em>Finding Darwin’s God.</em> They offered perspectives I had not previously heard, and rejected neither the scientific evidence nor the key tenets of the Christian faith. I was fortunate also to hear Francis Collins give several talks on science and faith. Now I knew someone universally acknowledged as an outstanding scientist that was open about his faith, and I agreed wholeheartedly with <a href="http://biologos.org/blog/biologuration" (target="_blank") >his approach</a>.</p>

<p>Now, as a professor, how can I encourage my students to authentic engagement and dialogue on issues like this? Following the example of the Veritas Forum, I can call on a common search for truth. But first it requires understanding what is so special about college students.</p>

<p>College students are often living away from home, are exposed to lots of new ideas in a rigorous environment (including, for many, evolutionary biology and philosophy--taught by professors who are assumed to be greater intellectual authorities than any high school teachers), and are seeking direction for their future careers. In short, it is a time of intense exploration and change for many young people. On residential college campuses, students can experience an unparalleled sense of community, engaging in deep conversations in the dining halls and dormitories. More than any other place, colleges and universities are concentrated locations of our world’s future leaders. Charles Malik, Lebanese philosopher, diplomat, and co-author of the Universal Declaration of Human Rights has said, <em>"The university is a clear-cut fulcrum with which to move the world. Change the university and you change the world."</em> Sadly, the message most students in American universities hear today is one of incompatibility between science and faith.</p>

<p>This is not only a concern for Christian students, but for their non-believing peers as well. If agnostic students think it is inconsistent to embrace both science and Christianity, they are very unlikely to be spiritually curious. If science and faith are viewed as mutually exclusive perspectives, it will be hard for students (and even harder for faculty!) to be credible witnesses for the Christian faith on campuses, not to mention being faith-filled scientists. It is because of my love for God, for truth, and for students that I seek to promote harmony between faith and science, Jesus and genes. And sometimes my students’ lives are changed <a href="http://www.intervarsity.org/news/finding-absolute-joy" (target="_blank") >dramatically</a>. </p>

<p>So what practical steps can we take to foster the kind of conversations that need to be had in the university, and what resources are available to help that project along?  While there are many available books on the subject, as well as many on-line resources, I am particularly excited about the new <em>From the Dust</em> documentary and the materials BioLogos is providing to accompany them, especially when students can explore then in a supportive group setting.  To facilitate exactly that kind of open dialogue, I was invited to develop a study guide to accompany the film, and to try it out in my own college community. </p> 

<p>I liked using <em>From the Dust</em> as the centerpiece of the group study plan, as it is visually, theologically and emotionally stimulating. It also takes the Bible seriously and is aimed at starting conversations, rather than ending them with dogmatic answers to challenging questions. I also knew that even though <em>From the Dust</em> is only an hour long, it is packed with potential discussion topics and is probably best viewed over the course of a few sessions instead of all at once. Since I was focused mainly on a Christian audience, I decided to have the students read from Genesis before we started the film, read it again halfway through the film, and read it a third time after we’d finished the film. To deepen the discussion further, and to give students something to think about each week between our sessions, I added six scholarly yet accessible articles that are freely available online from BioLogos, the Faraday Institute, or the American Scientific Affiliation.</p>

<p>My students, several of whom I did not know prior to our science & faith study, were from both Protestant and Catholic backgrounds. Many had not deeply engaged the intersection of science and faith previously, but were dissatisfied with what they had been taught at church or at Christian primary or secondary schools. While individual responses at each session varied, the group was overwhelmingly positive about the content and the process of our study together. Many of the questions we discussed were difficult and emotional, and having the space to wrestle with the ideas together in a supportive group was incredibly helpful.</p>

<p>Tomorrow, I’ll give some more concrete details on how the Study Guide can be used in college and other settings, and also highlight another new film-based resource: The Faraday Institute’s <em>Test of Faith</em> project.</p><br> </br>]]></content:encoded>
        <pubDate>Wed, 12 Sep 12 07:04:00 -0700</pubDate>
        <dc:creator>David Vosburg</dc:creator>
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        <title>Denisovans, Humans and the Chromosome 2 Fusion</title>
        <link>http://biologos.org/blog/denisovans&#45;humans&#45;and&#45;the&#45;chromosome&#45;2&#45;fusion?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/denisovans&#45;humans&#45;and&#45;the&#45;chromosome&#45;2&#45;fusion?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>The Denisovans, an extinct hominid group that interbred with modern humans, made the news again lately with the publication of a more detailed study of their genome. One of the many interesting findings was that the Denisovans share the same chromosome 2 fusion that modern humans have.</description>
        <content:encoded><![CDATA[<br> </br><p>The Denisovans, an extinct hominid group that interbred with modern humans, made the news again lately with the publication of a more detailed study of their genome. One of the many interesting findings was that the Denisovans share the same chromosome 2 fusion that modern humans have. In this post, I review what we know about the origins of human chromosome 2, and then discuss the new Denisovan findings and their implications. </p>

<h3>The origins of human chromosome 2: a brief review</h3>
<p>Though I have discussed the evidence for a fusion event leading to human chromosome 2 before, perhaps a brief review of the evidence is in order. The human genome is made up of 23 pairs of chromosomes (for a total of 46 chromosomes). This makes us something of an oddity among living great apes, all the rest of whom  have 24 pairs of chromosomes (for a total of 48). Given that there are many independent lines of evidence that support the conclusion that we share a common ancestor with other great apes, this poses something of a conundrum: how is it that our species arrived at this specific chromosome number? If we were to represent this “problem” on a phylogeny, or tree of relatedness, it would look something like this (not to scale):</p>

<p class="caption-center"><img src="http://biologos.org/uploads/static-content/denisovans_fig_1.jpg" alt="" height="357" width="434"  /></p>
 
<p>Our closest living relatives, chimpanzees and bonobos, both have 48 chromosomes, as do all other great apes such as gorillas and orangutans. This pattern has one of two explanations, one of which is much more likely than the other. Either the common ancestor to these species had 48 chromosomes, and there was an event that reduced that number to 46 specifically on the lineage leading to humans (option A), or the common ancestor species had 46 chromosomes, and there were independent, repeated events that increased chromosome number in all other great ape species (option B). We can compare these options by placing the required event(s) on the phylogeny (again, not to scale): </p>

<p class="caption-center"><img src="http://biologos.org/uploads/static-content/denisovans_fig_2.jpg" alt="" height="300" width="570"  /></p>
 
<p>It should be obvious that the option that requires the fewest events is the more likely one – in this case option A with an event that reduces chromosome number in the lineage leading to humans. The other option, that of repeated, independent events to increase chromosome number, remains a formal, but unlikely, possibility. Events that reduce chromosome number are not frequent occurrences, so Option A is more likely than Option B.</p>

<p>We can also find further support for Option A, because it predicts a specific type of event, namely one that reduces chromosome number. Since <em>loss</em> of a large amount of chromosomal material is almost always detrimental, we need an event that reduces chromosome number without losing information. One way for this to happen is for two chromosomes to fuse together and become one. Initially, this event would produce an individual with 47 chromosomes, where two different chromosomes get stuck together. Contrary to what is often assumed, this individual would be fertile and able to interbreed with the others in his or her population (who continue to have 48 chromosomes). In a small population, over time, two relatives who both have one copy of the fusion chromosome may mate and produce some progeny with two copies of the fused chromosome, or the first individuals with 46 chromosomes. Since either a 48-pair set or a 46-pair set is preferable for ease of cell division, this population will either eventually get rid of the fusion variant (the most likely outcome), or by chance will switch over completely to the “new” form, with everyone bearing 46 chromosome pairs. While not overly likely, this type of event is not especially rare in mammals, and we have observed this sort of thing happening within recorded human history in other species.  Some mammalian species even maintain distinct populations in the wild with differing chromosome numbers due to fusions, and these populations retain the ability to interbreed. </p>

<p>Further evidence for a fusion event in the lineage leading to modern humans comes from comparing <em>synteny</em>, or gene locations and orders on chromosomes within modern great apes – an issue we have discussed <a href="http://biologos.org/blog/signature-in-the-synteny">here</a> before.  In brief, what we see in human chromosome 2 is exactly what we would predict for a fusion event. When compared to other great apes, we see the genes on human chromosome 2 match up, in order, with two smaller ape chromosomes. We also see that sequences used at the tips of chromosomes are present at the proposed fusion site, and that human chromosome 2 has not one but two sites for the cell cytoskeleton to attach to for cell division – but that one of the sites is mutated and not functional, though it lines up precisely with the location of this site on the appropriate ape chromosome. Together, this evidence consistently supports both common ancestry for humans and great apes, and specifically that the difference we see in our chromosome numbers arose due to a single fusion event. I briefly discussed this evidence in my <a href="http://biologos.org/blog/the-sorrows-and-joys-of-teaching-evolution">last post</a> where I describe how I teach some of this material and the compelling impact it has on students exploring the evolution question for the first time. </p>

<h3>Enter the Denisovans</h3>
<p>With that as background, we are now prepared to appreciate a new finding that comes from genomics work done on the Denisovan hominids, an archaic species that is more closely related to Neanderthals than to us, but that nonetheless interbred with some anatomically modern humans as they migrated out of Africa and populated the globe. (For those not familiar with the Denisovans, or the evidence for our interbreeding with them, both Darrel Falk and I have written on this previously, <a href="http://biologos.org/blog/a-geneticists-journey">here</a> and <a href="http://biologos.org/blog/understanding-evolution-neanderthals-denisovans-and-human-speciation">here</a>). Recently, a more detailed understanding of the Denisovan genome <a href="http://www.nature.com/news/new-dna-analysis-shows-ancient-humans-interbred-with-denisovans-1.11331">was published</a>, and nested in the new information is the discovery that the Denisovans share the 46 chromosome set with the same fusion that <a href="http://johnhawks.net/weblog/reviews/denisova/denisova-chromosome-2-2012.html">we have</a>. This strongly supports the hypothesis that the fusion event predates the separation of our species. If we were to represent this on a phylogeny, we can now place this event with more accuracy than before (as before, the phylogeny is not to scale): </p>

<p class="caption-center"><img src="http://biologos.org/uploads/static-content/denisovans_fig_3.jpg" alt="" height="452" width="513"  /></p>
 
<p>Despite this new information, one obvious question remains. Did the Neanderthals also have the 46-pair set? From looking at the phylogeny above, we can see that the most likely answer is that they did, since the fact that the Denisovans had it strongly implies that the last common ancestor of humans and Neanderthals / Denisovans had it as well, and the Neanderthal-Denisovan split comes later. While the Denisovan DNA samples are of high enough quality to make this assessment, we do not yet have Neanderthal DNA of high enough quality to do the same analysis with current methods (though one additional feature of the new work on the Denisovan genome is developing more sensitive DNA sequencing techniques that may resolve this question in the future).</p>

<p>In other words, this fusion seems to be an ancient one, predating our species by several hundred thousand years. Present estimates of the last common ancestor between humans and Neanderthals / Denisovans  range at about 800,000 years ago.</p>

<h3>Implications for understanding our “becoming human”</h3>
<p>The main implication from this work is that it places the fusion event well before the advent of our species. I’ve often chatted informally with Christians about evolution, and at times some have thought that this fusion event was what “started” our species, or made our species unable to interbreed with other groups. Some have even suggested that perhaps the fusion event was what produced the first human (i.e. Adam). </p>

<p>Note that thinking this way suggests a misunderstanding of how chromosome fusions occur and what effect they have on their hosts. A fusion does not precipitate a speciation event, but rather the individual with the fusion remains a part of his or her population, and able to interbreed, even if with reduced fertility. Also, there is no necessary biological effect or change that the fusion produces on the appearance of the organism.  These misunderstandings aside, however,what this new evidence shows is that this fusion event took place long before modern humans arose at around 200,000 years ago. Indeed, the 800,000 years ago date for the last human - Denisovan common ancestor means that this is the most recent date possible for the fusion. While it is an interesting piece of our evolutionary history, it doesn’t seem to have much to do with how we came to acquire the traits that set us apart from, and ultimately outcompete, other similar species.</p> 
<br> </br>]]></content:encoded>
        <pubDate>Thu, 06 Sep 12 13:07:21 -0700</pubDate>
        <dc:creator>Dennis Venema</dc:creator>
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        <title>The Randomness Project</title>
        <link>http://biologos.org/blog/the&#45;randomness&#45;project?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/the&#45;randomness&#45;project?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>It is not uncommon to hear voices proclaiming that biology and physics have shown us that—at fundamental levels—nature is random, hence meaningless, purposeless, and without a creator.  But how might God work providentially through indeterminate processes?  The John Templeton Foundation has provided a generous grant of $1.69 million to support a new research initiative on the theme of Randomness and Divine providence.</description>
        <content:encoded><![CDATA[<p>It is not uncommon to hear voices proclaiming that biology and physics have shown us that—at fundamental levels—nature is random, hence meaningless, purposeless, and without a creator.  In fact, chance (or randomness) has often been seen as inconsistent with Christian faith by Christians, too, not just by those opposed to faith.  For instance, none other than John Calvin wrote:</p>

<blockquote><p>Suppose a man falls among thieves, or wild beasts; is shipwrecked at sea by a sudden gale; is killed by a falling house or tree.  Suppose another man wandering through the desert finds help in his straits; having been tossed by the waves, reaches harbor; miraculously escapes death by a finger’s breadth.  Carnal reason ascribes all such happenings, whether prosperous or adverse, to fortune.  But anyone who has been taught by Christ’s lips that all the hairs if his head are numbered [Matt. 10:30] will look further afield for a cause, and will consider that all events are governed by God’s secret plan. </p></blockquote>

<p>In this passage, Calvin presents belief in “fortune” as evidence of carnal reasoning, and statements like this one have contributed to a widely-held notion that modern scientific understandings of the role that randomness plays in nature is inconsistent with belief in divine providence.  In other words, if “randomness” equals blind and capricious “fortune,” then how can God be said to be working all things to his ends? </p>

<p>But Calvin could not have known of the very different understanding of randomness held by today’s scholars. Physical scientists, mathematicians, and statisticians have not yet agreed on a single unambiguous definition of the term “randomness,” but among these scientists, the term consistently refers to a family of related concepts focusing on <em>unpredictability of the outcomes of single events and the absence of pattern in sequences of outcomes</em>.  I like this statement by John Polkinghorne, “Chance doesn't mean meaningless randomness, but historical contingency. This happens rather than that, and that's the way that novelty, new things, come about.”  In Polkinghorne’s view, chance is an agent of creativity and can be perceived as being purposeful. </p>

<p>In fact, there are abundant examples of phenomena in nature in which randomness plays a role one could understand as being purposeful.  For example, osmosis is a marvelous mechanism that enables all 10 trillion cells in our bodies to be nourished – it depends on the random motion of molecules.  The human immune system is able to defend the body against attacks from millions of different microorganisms using a relatively small number of building blocks and random combinations of these to fashion defenses specific to each adversary.  We never take a breath and find it to be all nitrogen or carbon dioxide – random motion of molecules keeps oxygen close to uniformly distributed throughout the atmosphere.  </p>

<p>In 2007, a British statistician, David Bartholomew published <em>God, Chance, and Purpose</em> in which he argues that God “can have it both ways”—that he can use low level randomness to accomplish divine purposes while simultaneously maintaining order at a higher level.  Of course, we cannot prove that God ordained these random processes to achieve divine purposes in the world.  But to a person of faith, such an interpretation in both consistent with the observations we make in science and with the Scriptural notion of God’s providential care for the world.</p>

<p>Considerations like these led the John Templeton Foundation to provide a generous grant of $1.69 million to support a new research initiative on the theme of Randomness and Divine providence.  Beginning this past summer, the program has the purpose of providing support for solid theoretical exploration of the kinds of ideas and possibilities expressed above—involving theology, philosophy, natural science, mathematics, and statistics.  The grant will support individual scholars and teams of scholars who are willing to devote a significant amount of time between March of 2013 and June of 2015 to such work, and the project’s request for proposals suggests the following as questions researchers might pursue:</p>

<ul><li>How might God work providentially through indeterminate processes?  Can recent advances in understanding the nature of randomness offered by algorithmic information theory, physics, biology, and other sciences provide insight into this question?</li>
<li>Can we bring clarity to the concept of "randomness"?  Philosophers and scientists have tried on occasion to give precise definitions of when a process is random, but more work needs to be done on the question.  How do (or should) conceptions of randomness vary across academic disciplines?</li>
<li>What are some possible implications of randomness for hiding or unfolding divine creativity and purpose in the world?  Could God use randomness to (1) generate creativity, (2) hide divine actions, or (3) unfold information? Why might God do so?</li>
<li>How might we identify and come to understand a significant collection of nondeterministic processes in which agents could intentionally employ randomness to bring about purposeful results?</li>
<li>How might we mathematically and physically model random processes in ways that help us understand how divine providence could be exercised in a "chance-governed" world?</li>
<li>How do "laws and orders" in nature interplay with "chance and randomness" in bringing about results that can be interpreted as aspects of divine providence?</li>
<li>Might randomness be evidence of limitations in human knowledge but nothing more?  Or might it be evidence of ontological indeterminism?  Might this be tested?</li>
<li>What implications does randomness have for aspects of God’s relationship with the physical world such as God’s relationship to time and God’s role in causation?  How might randomness be reconciled with God’s foreknowledge?</li>
<li>How might an understanding of providence based on an extended Molinism and/or open theology incorporate randomness?  For example, could an extended Molinism provide a plausible account of the relationship between quantum mechanics and divine providence?</li>
<li>What are some theodical implications of randomness, particularly for the issue of natural evil?</li>
<li>How have the theological traditions of Augustine, Maimonides, Aquinas, Luther, and Calvin addressed chance and fortune?  In what ways might they incorporate ontological randomness?</li>
<li>How do or could religions other than the Judeo/Christian tradition understand and incorporate randomness?</li>
<li>How is the concept of randomness understood by advocates of secularism, naturalism, and new atheism?  What are the strengths and weaknesses of these usages?</li>
<li>How might an understanding of randomness in the world alter our conceptions of divinity, especially our understanding of divine providence?</li></ul>

<p>Despite the range of issues mentioned above, research is by no means restricted only to these topics. In fact, the structure of the program is designed to foster collaboration and build community between scholars, with the end of expanding the range and integration of their work: two conferences will be held to bring scholars together with each other and then with members of the public—one at Calvin College in 2013 and the other at Fuller Theological Seminary in 2015. To get more information and to learn how to submit a proposal, see the <a href="http://www.calvin.edu/mathematics/randomnessproject/">project website</a>; then join us in exploring the truth that all creation glorifies God—even randomness!</p>
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        <pubDate>Fri, 31 Aug 12 05:00:42 -0700</pubDate>
        <dc:creator>James Bradley</dc:creator>
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        <title>The Sorrows and Joys of Teaching Evolution at an Evangelical Christian University</title>
        <link>http://biologos.org/blog/the&#45;sorrows&#45;and&#45;joys&#45;of&#45;teaching&#45;evolution?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/the&#45;sorrows&#45;and&#45;joys&#45;of&#45;teaching&#45;evolution?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>As a biology professor, I have the profound privilege of teaching the principles of evolutionary biology to a variety of students. As one might expect, teaching this subject matter at times engenders controversy, crises of faith, anger and fear in students (and others).</description>
        <content:encoded><![CDATA[<p>As I settle into the lecture, only I really know what is coming a mere few PowerPoint slides hence. The class is an upper-level course in genetics, and the topic is changes in chromosome structure. Starting with fruit flies as an example, I sketch out comparisons between closely related species for which complete genome sequences are available. Students learn about the evidence for chromosome fusions and fissions, the reordering of genes along chromosomes in different lineages over time (an issue of <em>synteny</em> which we <a href="http://biologos.org/blog/signature-in-the-synteny">have discussed before</a>), and how these lines of evidence support the hypothesis that the various fruit fly species we observe in the modern day derive from common ancestral species in the past. Perhaps my using of the genuine estimates for speciation dates raises a few eyebrows, since “millions of years” is something of a byword for some antievolutionary groups, and fruit flies have been separating into new species for tens of millions of years. Still, it’s pretty clear that this isn’t really rocking anyone’s world: they’re all just fruit flies, after all, and I like to talk about them, since they’re the organism I do my research on. </p>

<p>After the “information dump” using the fruit fly examples, it’s time for a class discussion/application before the students drift off too much. Ok, here’s a slide that shows the chromosome structure of a group of organisms that other lines of evidence suggest are part of a group of related species. What do you observe? Do you think these species are related? If so, what explains the differences you observe?</p>

<p>What the students don’t know is that the slide shows human chromosomes, and those of our closest living relative, the chimpanzee. Oblivious to this knowledge, they easily arrive at the correct answer: yes, the evidence is strong that these are quite recently diverged species, and that a chromosome fusion or fission event explains the differences in chromosome structure between them. When I tell them that every other species in this grouping has the higher chromosome number/structure, they correctly deduce that the species with the lower chromosome number should show <a href="http://biologos.org/blog/signature-in-the-synteny">evidence of a fusion event</a> in the form of “telomere” sequences at the fusion point and an inactive “centromere” at the location suggested by comparison to the other, related genome. </p>

<p>Easy. </p>

<p>As I look around the room, I see the students are satisfied. I cover some difficult material in this course, and the students are obviously pleased that this topic is so easy to handle. The lines of evidence are easy to follow, and it’s easy to predict and test one’s hypotheses. 
Then, only after they’ve seen the evidence at least once without the baggage that will inevitably come, I ask them if they know what two species they’ve just compared. </p>

<p>As a biology professor at a primarily undergraduate, evangelical, liberal arts and sciences university, I have the profound privilege of teaching the principles of evolutionary biology to a variety of students, both biology majors and non-majors. As one might expect, teaching this subject matter at times engenders controversy, crises of faith, anger and fear in students (and others). These types of sorrows are relatively well known and have been discussed here on BioLogos by several authors. Yet there are also great joys associated with teaching evolutionary biology in a Christian setting, and in this post I reflect primarily on these as a counter-balance to the more frequent stories of conflict and struggle.</p> 

<h3>The sorrows … </h3>
<p>Lest anyone think that this post is an attempt to present an overly-optimistic or whitewashed view of teaching evolution in an evangelical setting, let me acknowledge and affirm that the pain that many (yes, most) evangelical students go through as they learn about  evolution is substantial and real.  I have had too many long conversations with students caught between their faith communities and the science to deny this reality. I have seen students struggle with their faith, close their minds to the scientific evidence, and even resolutely declare that no amount of evidence would ever be enough to convince them that evolution is real. I have seen anger, hurt and fear. I have seen students willing to discard the nearly the entirety of modern science in order to maintain a particular anti-evolutionary view. </p>

<p>For me personally, the most difficult circumstances to watch are students who feel torn between the evidence and their faith. In some cases these are extremely bright students, who easily see the strength of the evidence, but feel the need to remain unengaged and uncommitted because they fear a backlash from their churches, or (especially) their parents.  While an evangelical university can be a wonderful, safe environment for students to explore these issues, that environment doesn’t follow them home. These struggles are painful to watch, and I’ve spent more than a few hours in prayer for students facing them. </p>

<h3>… and the joys</h3>

<p>Yet for all these issues, I thoroughly enjoy teaching evolution at an evangelical university.  Of course I do not enjoy the anguish it can produce for some of my students – far from it! Fortunately, conflict and emotional turmoil are not the whole story, and many evangelical students report that learning about evolution was a valuable, enriching experience, regardless of their views after the fact. </p>

<p>One of the things I enjoy most is that teaching evolution is never dull in an evangelical setting. My students might snooze through a class on cellular respiration, or be tempted to surf Facebook when they should be applying their reasoning skills to problems in genetics, but whenever evolution is the topic I have everyone’s full attention. Whatever else, evolution <em>matters</em>. That intensity of student engagement is invigorating, and the students feel it too. Regardless of where students ultimately decide to “land” on the issue, many report that they enjoyed the process – the exchange of ideas, the discussions and debates, and the new understandings gained. </p>

<p>In addition to the electrifying interest the topic holds for evangelical students, learning about evolution is also by nature a multidisciplinary enterprise and opportunity for personal growth. Students are not merely gaining a larger perspective in biology, but fitting that new understanding into their knowledge of Scripture, church history, and their own faith journey. Often in class students will contribute what they have learned in other courses to the discussion: courses dealing with the setting and context of Genesis, courses on church history, and courses on hermeneutics and exegesis frequently are drawn upon. It is for this reason that I feel learning about evolution in a Christian liberal arts university is one of the very best places to do so, providing the institution treats the topics fairly. In this setting, resources are available for <em>all</em> of the questions that evolution engenders for Christians, not merely the scientific ones. Moreover, faculty are generally able to assist students with resources that address these extra-scientific issues, and provide a safe and non-judgmental environment for students to learn. The ability to learn what can be faith-shaking material in a setting surrounded by professors committed to the academic and spiritual growth of their students can make all the difference. To be sure, this environment can be one of personal turmoil for students, but with that turmoil comes a rare opportunity for intellectual and spiritual growth in a way that other areas of biology simply cannot provide. </p>

<p>Many of my students, regardless of whether they ultimately accept or reject the evidence for evolution, report that they have grown spiritually through their learning process. Contrary to popular opinion, in my experience most who do come to accept the evidence for evolution also report this growth. They feel closer to God, not further from Him. They feel that they have a deeper appreciation for, and understanding of, His creation. They feel that their faith is now more their own, rather than merely that of their parents. Most importantly, they feel <em>free</em>: that they need no longer be afraid of evolution, but celebrate it as the mechanism by which God has populated His world with “endless forms, most beautiful.” </p>

<p>Seeing students experience that freedom is something that one cannot test on an exam, nor encapsulate as a teaching outcome – but it is a deep joy of my teaching career. </p>
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        <pubDate>Fri, 24 Aug 12 06:06:54 -0700</pubDate>
        <dc:creator>Dennis Venema</dc:creator>
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        <title>Series: Asa Gray and Charles Darwin Discuss Evolution and Design</title>
        <link>http://biologos.org/blog/series/asa&#45;gray&#45;and&#45;charles&#45;darwin&#45;discuss&#45;evolution&#45;and&#45;design?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/asa&#45;gray&#45;and&#45;charles&#45;darwin&#45;discuss&#45;evolution&#45;and&#45;design?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Many Christians believe that they face a painful choice&#45;&#45; either life was designed by God or it is an evolutionary product of natural selection.  Charles Darwin himself believed in this dichotomy, and people ever since have felt the need to &quot;choose sides&quot;.  However, looking back at history, we find that one of Darwin&apos;s chief scientific colleagues, Asa Gray, did not share this perspective. In this three&#45;part essay, part 1 charts the relationship of Asa Gray and Charles Darwin.  Part 2 describes Darwin&apos;s struggle with the problem of natural evil and design in nature, and part 3 explores how Asa Gray was able to embrace evolution without rejecting the idea of design.</description>
        <content:encoded><![CDATA[<h3>Asa Gray</h3>

<p class="caption-left"><img src="http://biologos.org/uploads/static-content/asa_gray_image_3.jpg" alt="" height="374" width="250"  /><br />Asa Gray</p>

<p>If Thomas Huxley earned the title of "Darwin's bulldog," then Asa Gray should be remembered as "Darwin's dove." Whereas Huxley enjoyed a good fight in his defense of Darwin's theory, Gray sought to mediate and bring sides together around a common understanding of "good science." As Darwin's strongest and most vocal scientific ally in the United States, Gray recognized the scientific importance of Darwin's efforts for the growing professionalism of biological researchers.</p>

<p>But as an orthodox Christian, a Presbyterian firmly devoted to the faith expressed in the Nicene Creed, Gray saw in Darwin's theory both evidence for his philosophical commitment to natural theology and support for his opposition to the idealism advocated by Louis Agassiz and the <em>Naturphilosophen</em> in both Europe and America. Indeed, Agassiz's advocacy of Platonic forms as a basis of biological understanding (e.g., "A species is a thought of the creator")<sup>1</sup> would be a major source of American opposition to Darwin's theory.</p>

<p>Professor of botany at Harvard during most of the middle half of the nineteenth century, Gray was one of the few members of the scientific community to whom Darwin revealed his theory before the publication of <em>On the Origin of Species,</em> and, from what I can tell, the only American. Gray and Darwin met briefly in January 1839 during one of Gray's visits to England. Later, during the 1850s, Darwin wrote Gray on several occasions requesting information--a practice that Darwin frequently employed.  In 1854, Darwin's friend and confidant, Joseph Hooker, showed Darwin Gray's review of Hooker's <em>Flora of New Zealand</em>, in which Gray had argued strongly against Louis Agassiz's idealism and had raised questions from his own work on the stability of species. Gray was not yet ready to deny their permanence, but hybrids and other observations were beginning to trouble him.</p>

<p>The next year Gray wrote a lucid and penetrating positive evaluation of Alphonse De Candolle's two-volume <em>Géographie botanique raisonnée</em>, a pioneering work dealing with plant geography and distribution from a statistical perspective. Hooker had sneeringly dismissed the work. In A. Hunter Dupree's authoritative biography of Gray, he describes Gray's puzzlement at Hooker's response in these terms:</p>

<blockquote>Although in the long view Gray's evaluation of the epoch-making nature of De Candolle's book was more justified than Hooker's sneers, [Gray was confused by his response, for] Hooker seemed to be talking with a more comprehensive theory definitely in mind, some reason for taking his position, which he did not divulge and which his friend [Gray] did not possess.<sup>2</sup></blockquote>

<p>Darwin, however, saw in both Gray's review of Hooker's book and in his comments on De Candolle's tome that Gray was troubled by some of the same empirical data that had been bothering him. In April 1855, Darwin wrote Gray to urge that Gray update his <em>Manual of the Botany of the Northern United States</em> first published in 1848, and especially to address the issue of the range of Alpine plants in the United States. Specifically, he said: "Now I would say it is your duty to generalise as far as you safely can from your as yet completed work."<sup>3</sup></p>

<p>Behind this request was Darwin's desire to test his impression that Gray could make a good ally. Gray passed the test, and finally, in July 1857, Darwin let Gray in on his theory of the transmutation of species. Gray was never an uncritical supporter, and there are many evidences in the correspondence between these two scientists that Gray was willing to challenge Darwin and disagree with some of his conclusions. Nevertheless, Gray saw the importance of Darwin's work and the ways in which it provided answers to the troublesome issues that he had confronted in his own botanical efforts.</p>

<p class="caption-center"><img src="http://biologos.org/uploads/static-content/asa_gray_image_2.jpg" alt="" height="294" width="570"  /></p>

<h3>Gray responds to Darwin's theory</h3>

<p>After considerable interchange--one might even say debate--among Gray, Darwin, and Hooker, Gray wrote to Hooker in October 1859 (one month before the publication of <em>On the Origin of Species</em>) saying that he had absolutely no problem with cognate species arising by variation. He did, however, raise a concern that would be the source of much future discussion. He wondered about Darwin's "carry[ing] out this view to its ultimate and legitimate results,--how [do] you connect the philosophy of religion with the philosophy of your science." He added: "I should feel uneasy if I could not connect them into a consistent whole--i.e., fundamental principles of science should not be in conflict."<sup>4</sup></p>

<p>When <em>Origins</em> was published, Gray wrote a clear, positive, yet critical review in <em>The American Journal of Science</em>. Aware of mounting religious opposition, he ended his review by arguing that whereas one could use Darwin's theory in support of an atheistic view of Nature, one could use any scientific theory in that way. He wrote:  "The theory of gravitation and ... the nebular hypothesis assume a <em>universal and ultimate</em> physical cause, from which the effects in nature must necessarily have resulted."<sup>5</sup> He did not see the physicists and astronomers who adopted Newton's theories as atheists or pantheists, though Leibniz earlier had raised such reservations.  And a similar situation existed with the origin of species by natural selection.  Darwin, Gray continued: "merely takes up a particular, proximate cause, or set of such causes, from which, it is argued, the present diversity of species has or may have contingently resulted. The author does not say necessarily resulted."<sup>6</sup></p>

<p>This far Gray could go with Darwin. But there was a point at which he parted company, and that was the fortuitous <em>randomness</em> of the process that Darwin's theory seemed to imply.</p>

<p class="intro"> In part 2, Dr. Miles describes Darwin's struggle with the problem of natural evil and design in nature.</p>

<h3>Notes</h3>

<p class="date">1. Cited in A. Hunter Dupree, <em>Asa Gray: American Botanist, Friend of Darwin</em> (Baltimore: The Johns Hopkins Press, 1959), 151.
2. Ibid., 236.<br> 
3. Charles Darwin, <em>More Letters of Charles Darwin</em>, ed. Francis Darwin, (New York: D. Appleton and Company, 1903), 252.<br>  
4. Dupree, <em>Asa Gray</em>, 266. <br> 
5. Asa Gray, "The Origin of Species" in <em>Darwiniana</em> (Cambridge, MA: The Belknap Press of Harvard University, 1963), 44. <br> 
6. Ibid.</p>
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        <pubDate>Sat, 04 Aug 12 07:21:11 -0700</pubDate>
        <dc:creator>Sara Joan Miles</dc:creator>
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        <title>David Lack and Darwin’s Finches</title>
        <link>http://biologos.org/blog/david&#45;lack&#45;and&#45;darwins&#45;finches?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/david&#45;lack&#45;and&#45;darwins&#45;finches?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Considering the immense popularity of &quot;Darwin&apos;s finches&quot;, it is quite surprising to learn that Charles Darwin himself had very little to say about them. In fact, it was actually David Lack, one century later, who conducted the critical research that immortalized the finches in biology textbooks and popular lore.</description>
        <content:encoded><![CDATA[<h3>Darwin’s Finches? </h3>

<p>Darwin’s finches are some of the most visible and recognizable symbols of evolution in the world today.  Biology textbooks feature them prominently, and the National Academy of Sciences has enshrined them in the entrance of their headquarters in Washington, DC.  Surely the finches that Darwin collected on the Galápagos islands were a central feature of his evolutionary theory, right?</p>

<p class="caption-left"><img src="http://biologos.org/uploads/static-content/Lacks_Finches_NASlobby.jpg" alt="Lobby of the National Academy of Sciences" height="350" width="570"  /></br>Lobby of The National Academies Building.  Courtesy of CPNAS. Photo by Robert Lautman</p>

<p>Actually, the Galápagos finches are never even mentioned in Darwin’s famous work <em>On the Origin of Species</em>.  Nor do they appear in Darwin’s famous notebooks on “Transmutation of Species”, in which he formulated the idea of evolution by natural selection.<sup>1</sup>  Even Darwin’s private diary of his voyage on the HMS <em>Beagle</em> only mentions the Galápagos finches briefly in passing.<sup>2</sup> </p> 

<p>It was only in 1845, in the second edition of <em>The Voyage of the Beagle</em>, that Darwin included a tantalizing sentence about the Galápagos finches:</p>

<blockquote>Seeing this gradation and diversity of structure in one small, intimately related group of birds, one might really fancy that from an original paucity of birds in this archipelago, one species had been taken and modified for different ends.<sup>3</sup>
</blockquote>

<p>However insightful this statement may have been, Darwin never published anything else about the Galápagos finches for the rest of his life.  Nor did he publically present these birds as direct evidence for this theory of evolution.<sup>4</sup> 
</p>

<p>If these finches were so important to Darwin’s evolutionary theory, why did he remain silent about them?  One of his comments in <em>The Voyage of the Beagle</em> provides us with a clue:</p>

<blockquote>Unfortunately most of the specimens of the finch tribe were mingled together; but I have strong reasons to suspect that some of the species of the subgroup Geospiza are confined to separate islands.<sup>5</sup> </blockquote>

<p>When Darwin was exploring the Galápagos himself in 1835, he had not formulated his theory of evolution yet, and thus he did know what data would be necessary to make definitive conclusions about finch evolution.  In particular, he did not keep careful track of which of his specimens came from which islands.   Moreover, as was customary among naturalists at that time, Darwin only collected a small number specimens—he brought home only 31 finches and 64 total birds from the Galápagos.<sup>6</sup>   </p>

<p>Though Darwin sensed that these birds were truly special, he lacked sufficient evidence to reach any specific conclusions about their evolutionary origins.  It would be up to the rest of the scientific community to carry out the necessary empirical research.  Subsequent expeditions in 1868, 1891, 1897, and 1905 brought back thousands of Galápagos finch specimens, but instead of unlocking the mysteries of evolutionary theory, the Galápagos finches became a great enigma.<sup>7</sup>  </p>

<p>A century after Darwin's voyage, scientists still struggled to explain the staggering variety of finches on this tiny, remote archipelago.  By the mid-1930’s, British Museum ornithologist Percy Lowe argued that the finches presented a "biological problem of first class importance", and he told the British Association for the Advancement of Science that the finches displayed a "bewildering diversity, intergradation, and distribution".<sup>8</sup>   Who would be up to the challenge of making sense of such tremendous biological complexity? It was David Lack.</p>
 
<h3>David Lack</h3>

<p class="caption-right"><img src="http://biologos.org/uploads/static-content/David_Lack.png" alt="Ornithologist David Lack" height="291" width="250"  /></br>Ornithologist David Lack</p>

<p>David Lack had an exceptionally keen eye for bird-watching, and he possessed a passion to match it.  By age 15, he had already observed 100 distinct species of birds, and before entering college, authored his first scientific paper.  At Cambridge University in the early 1930’s, Lack was disappointed to find that his zoology professors taught “nothing about evolution, ecology, behavior or genetics, and of course nothing about birds.”<sup>9</sup>  In fact, at that time, there were only two professional ornithologists in all of Britain!</p>

<p>Thus David Lack took it upon himself to create his own learning opportunities.   As an undergraduate, he became the president of the Cambridge Ornithological Club, traveled to Greenland for a bird-watching expedition, and cultivated a relationship with the prominent biologist Julian Huxley (grandson of Thomas Henry Huxley).  Huxley was an inspiring mentor and encouraged Lack to expand his research further by studying tropical birds.<sup>10</sup>  Following this advice, Lack embarked on a research trip to Tanzania in the summer of 1934, but his greatest adventure was yet to come. </p>

<p>In 1937, Lack became fascinated by the scientific mysteries surrounding the Galápagos finches.  But in order to study their behavior, Lack would need to travel to remote islands halfway around the world.   How could he possibly get there?  Once again, Julian Huxley was tremendously supportive and raised funds from two prominent scientific societies to pay for his expedition.  After a long delay, David Lack and five companions finally set off on their journey.</p>

<p>Instead of residing in comfortable quarters aboard a royal naval ship, Lack’s group subsisted on a shoestring budget, traveled on commercial steamers, and stayed with local settlers.  Their experience was definitely not a romantic tale of imperial expedition:</p>

<blockquote>The Galápagos are interesting, but scarcely a residential paradise.  The biological peculiarities are offset by an enervating climate, monotonous scenery, dense thorn scrub, cactus spines, loose sharp lava, food deficiencies, water shortage, black rats, fleas, jiggers, ants, mosquitoes, scorpions, Ecuadorian Indians of doubtful honesty, and dejected, disillusioned European settlers.<sup>11</sup></blockquote>

<p>Whereas Charles Darwin spent only nineteen days on the shores of the Galápagos, Lack and his crew conducted more than five months of meticulous and exhausting study in the harsh climate.  At that time, even the finches themselves provided little solace.  Lack wrote,</p>
	
<blockquote>Darwin’s finches are dull to look at, not only in their orderly ranks in museum trays, but also when they hop about the ground or perch in the trees of the Galápagos, making dull unmusical noises.  Only the variety of their beaks and the number of their species excite attention.<sup>12</sup> <strong></strong></blockquote>

<p class="caption-left"><img src="http://biologos.org/uploads/static-content/Lacks_Finches_Cactus_Finch.jpg" alt="Large Cactus Finch–the Galapagos." height="215" width="320"  /></br>Large Cactus Finch on Española Island in the Galápagos Islands</p>

<p>The repetitive tedium requisite for important scientific discoveries is rarely discussed in public, and even today many bright-eyed science students become disillusioned by the painstaking work demanded by their Ph.D. programs.  But one of the things that distinguishes great scientists is their unwavering commitment and tenacity in completing major projects. David Lack's efforts were not in vain: </p>

<p><em>"Despite his personal discomforts (or perhaps because of them), Lack did see something on the Galápagos that no one had ever seen before—natural selection at work among its finches through interspecies competition."</em> <sup>13</sup></p>

<p>When the birds’ breeding season ended in 1939, Lack was ready to return to his home in England.  But the captive finches that he had brought with him fared so badly on the voyage home that he detoured to San Francisco and put them in the care of the California Academy of Sciences.  Turning this mishap into an opportunity, Lack stayed there for five additional months to study the Academy’s enormous  collection of Galápagos finch specimens.<sup>14</sup> </p>

<p>To complete his systematic research, Lack then travelled across the United States to study the Galápagos finch collection housed at the American Museum in New York.<sup>15</sup>   Altogether, Lack examined more than 8000 specimens and specifically measured the length, width, and depth of all their beaks.<sup>16</sup> </p>

<p>Lack’s final obstacle was in getting his research published.  Though he completed his academic manuscript “The Galápagos Finches—A Study in Variation” in 1940, paper shortages during World War II delayed its publication by the California Academy of Sciences until 1945.  Were he only interested in making an original contribution to science, Lack could have stopped here and congratulated himself on a job well-done.  However, his motivation sprung from a deeper source:</p>

<p class="caption-right"><img src="http://biologos.org/uploads/static-content/Lacks14finches_sm.jpg" alt="David Lack's illustration of 14 Finches" height="455" width="300" /> </br>David Lack's drawing of 14 species of Galápagos finches, p. 19 of <em>Darwin’s Finches</em></p>

<p><em>"I did not watch birds primarily for scientific reasons but for sheer enjoyment, and from the age of 15 onward returned day after day in a glow of excitement after seeing a new bird or a new habit."</em> <sup>17</sup></p>

<p>Lack’s joyful fascination with the Galápagos finches inspired him to continue developing his conclusions long after returning from his expedition.  While waiting for his academic paper to be published, he began writing a book that would enable students and the general public to share his excitement about these remarkable birds and the evolutionary processes that shaped them.</p>

<p>First published in 1947, Lack’s book became tremendously influential.  Before this time, biology textbooks had never even mentioned the Galápagos finches.  But after David Lack’s study, the finches became a primary example of evolution by natural selection, specifically <a href="http://en.wikipedia.org/wiki/Adaptive_radiation">adaptive radiation</a>.  Not only did textbooks fully rely on Lack’s findings, they also followed his lead in calling them “Darwin’s finches”, the title of Lack’s famous book.<sup>18</sup> </p>

<h3>Iconic Finches</h3>

<p>What was it about these birds that made them such a prominent symbol of evolution?  As Darwin himself pointed out, the numerous Galápagos finch populations each have distinctive beaks, and he speculated that they could have evolved from an ancestral species that came to the islands.  But a complete picture of finch evolution would have to wait another hundred years, when David Lack arrived.</p>

<p>During his five months on the Galápagos, including both the rainy and dry seasons, Lack observed that these beak differences enable the finches to subsist on different kinds of food:</p>

<blockquote>The beak differences between most of the genera and subgenera of Darwin's finches are clearly correlated with differences in feeding methods.  This is well borne out by the heavy, finch-like beak of the seed-eating <em>Geospiza</em>, the long beak of the flower-probing <em>Cactornis</em>, the somewhat parrot-like beak of the leaf, bud, and fruit-eating <em>Platyspiza</em>, the woodpecker-like beak of the woodboring <em>Catcospiza</em>, and the warbler-like beaks of the insect-eating <em>certhidea</em> and <em>Pinaroloxias</em>.<sup>19</sup>  </blockquote>

<p class="caption-left"><img src="http://biologos.org/uploads/static-content/finchbeaks_sm.jpg" alt="" height="270" width="350"  /> </br>Lack's image of beak adaptations from <em>Darwin’s Finches</em></p>



<p>Specializing in such different sources of food enables these finches to live in close proximity without directly competing with each other or driving populations to extinction.  The fact that so many of these closely related finches are able to co-exist is a remarkable fact in itself.  As Lack himself put it, “It is not only the origin, but also the persistence, of new species which require explanation.”<sup>20</sup> </p>

<p>But it is also fascinating to consider how these birds got to be so different in the first place.  How did a finch come to have a beak like a “parrot”, “woodpecker”, or “warbler”?  The answer lies in the distinct characteristics of the Galápagos.  Because the islands are so remote, no actual parrots, woodpeckers, or warblers ever settled on it.  In the absence of these species, the Galápagos finches were able to adopt feeding habits and forms that they would never have taken on a large continent full of other birds competing for food.  The isolation of these islands offered just the right conditions for us to see living examples of adaptive radiation.<sup>21</sup> </p>

<h3>Conclusion</h3>

<p>Considering the immense popularity of the Galápagos finches, it is quite surprising to learn that Charles Darwin himself had so little to say about them.  In fact, it was actually David Lack, one century later, who conducted the critical research that immortalized the finches in biology textbooks and popular lore.  By naming his landmark book <em>Darwin’s Finches</em>,<sup>22</sup>  Lack paid homage to the man whose voyage on the HMS Beagle helped transform the study of natural history.  But at the same time, Lack also obscured the fact that evolutionary biology is an enterprise conducted by a large community of brilliant scholars, not just the product of one man’s efforts.</p>

<p>This tendency to immortalize “great men of science” has also led many people to refer to modern evolutionary theory as <em>Darwinism</em>, despite the fact that it has substantially changed and developed over the past 150 years.  It is important to give credit where credit is due, and if that’s the case, we should seriously reconsider how we refer to the Galapagos finches.  Evolutionary biologist Dolph Schluter, who studied the finches several decades after David Lack, had this to say:</p>

<blockquote>I find Lack's intuition really stunning given how little information he had.  He's my hero actually… They should be called Lack's finches.<sup>23</sup></blockquote>

<p class="intro">In the second part of this series, we’ll explore the fact that David Lack, in addition to being a world-renowned evolutionary biologist, was also a devout Christian.  His study of evolutionary theory did not cause him to lose his faith; in fact, he actually <em>converted</em> to Christianity after completing his Galápagos finch research.</p>

<h3>For Discussion</h3>
<strong>We’ve seen in this essay that the term “Darwin’s finches” is misleading, especially since Charles Darwin himself didn’t make the Galapagos finches famous.  Is it also problematic that people refer to modern evolutionary theory as “Darwinism”?  What misunderstandings can arise by associating an entire field of science with just a single person? Share your thoughts in the comments section below.</strong></p>

<h3>Further Reading</h3>
<ul><li>Grant, Peter R.; Grant, B. Rosemary. <em>How and Why Species Multiply: The Radiation of Darwin's Finches</em>, Princeton University Press, 2008.</li>

<li>Sulloway, Frank J. (Spring 1982), "Darwin and His Finches: The Evolution of a Legend" (<a href="http://www.sulloway.org/Finches.pdf">PDF</a>), <em>Journal of the History of Biology</em> 15 (1): 1–53.</li>

<li>Weiner, Jonathon. <em>The Beak of the Finch: A Story of Evolution in Our Time</em>.  Vintage Books, 1995.</li></ul>

<h3>Notes</h3>
<p class="date">1.  Sulloway, F. (1983). "Darwin and his finches: The evolution of a legend." <em>Journal of the history of biology</em> 15(1): 32. Darwin’s notebooks on transmutation mentioned Galapagos tortoises and mockingbirds, not finches.<br>
2.  Lack, David. <em>Darwin’s Finches</em>.  Cambridge University Press, 1947: 9.  Confirmed by Sulloway (1983), p5. <br>
3.  Darwin, Charles. <em>Journal of researches into the natural history and geology of the countries visited during the voyage of H.M.S. Beagle round the world</em>. London: John Murray. 2d ed. 1845: 379-80.  This edition of the book also contained the drawings of four different finches that have become enshrined in biology textbooks and on the walls of the National Academy of Sciences in Washington, DC.  <br>
4.  Sulloway, p35.  Sulloway points out that the first published evolutionary account of the Galapagos finches was not until 1876, by Osbert Salvin: "On the Avifauna of the Galapagos Archipelago." <em>Trans. Zool. Soc. London</em>, 9:447-51.<br>
5.  Darwin (1845), p395.<br>
6.  Sulloway, p40.<br>
7.  Sulloway, p40.<br>
8.  Larson, E. J. <em>Evolution's Workshop: God and Science on the Galapagos Islands</em>. New York, Basic Books, 2001: 166-67.<br>
9.  Lack, David. (1973) “My life as an amateur ornithologist.” <em>Ibis</em>: 424. <br>
10.  Lack (1973), 425-27.<br>
11.  Lack (1947), p1.<br>
12.  Lack (1947), p11.<br>
13.  Larson, 167-68. <br>
14.  The California Academy of Sciences sponsored an expedition to the Galapagos in 1905-06 and collected nearly 9000 Galapagos finch specimens (Sulloway, p40).<br>
15.  In New York, Lack roomed with the curator of the finch collection—German émigré zoologist Ernst Mayr.  By developing this relationship, Lack had close ties with two of the biggest figures in the neo-Darwinian synthesis, Julian Huxley and Ernst Mayr (Larson, 168).<br>
16.  Larson, p168.<br>
17.  Lack (1973), p424.<br>
18.  Larson, p198.<br>
19.  Lack (1947), p60.<br>
20.  Lack (1947), p158.<br>
21.  See Lack’s concluding chapter on “Adaptive Radiation”, pp146-159 of <em>Darwin’s Finches</em> (1947).<br>
22.  British ornithologist Percy Lowe originally proposed the name “Darwin’s finches” in 1935, but the name did not catch on until Lack used it in his book.  See P.R. Lowe, (1936) "The Finches of the Galapagos in Relation to Darwin's Conception of Species." <em>Ibis</em>, 13th ser., 6:310-321.  (Cited in Larson, p287)<br>
23.  Schluter, in an interview with Edward Larson, 16 March 2000.</p>
]]></content:encoded>
        <pubDate>Wed, 01 Aug 12 04:43:25 -0700</pubDate>
        <dc:creator>Thomas Burnett</dc:creator>
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        <title>Series: The Human Fossil Record</title>
        <link>http://biologos.org/blog/series/human&#45;fossil&#45;record?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/human&#45;fossil&#45;record?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In this series, James Kidder provides an intriguing study on transitional fossils and the evolutionary history of modern humans.  He begins by discussing the fossil record, explaining how new forms are classified. He then explains the physically distinguishing trait of humankind—bipedalism.  From the discovery of Ardipithecus, the earliest known hominin, to the australopithecines, the most prolific hominin, Kidder focuses on the discovery, the anatomy, and the interpretation of these ancestral remains.</description>
        <content:encoded><![CDATA[<h3>Discovery</h3>

<p class="caption-left"><img src="http://biologos.org/uploads/static-content/Eugene_Dubois.jpg" alt="" height="320" width="240"  /></br>Eugene Dubois</p>
It was 1890 and <a href="http://en.wikipedia.org/wiki/Eugene_Dubois">Eugene Dubois</a> was tired.  He had searched everywhere in Sumatra for the human ancestors that were supposed to be there—at least according to the theories of his mentor, famed German naturalist Ernst Haeckel.  Instead, he had found only heat and malaria.</p>

<p>13 years before, in 1877, Dubois had arrived in Amsterdam to study medicine, but always harboring a desire to study the ancestry of modern humans.  So, after four years at the University there, he accepted an invitation to go to the University of Utrecht to study comparative anatomy and devote himself to the latest thinking about the origins of the human species.  It was during his time at Utrecht (from 1881 to 1887) that Dubois became enamored of Haeckel’s views on human origins, which differed from those of Darwin.  While Darwin argued that humans had evolved in Africa, the region in which our closest living relatives—the chimpanzees and gorillas—still live, Haeckel believed that the origins of humanity lay in East Asia.  This was so, he believed, because of his own observations of gibbons that walk bipedally when on the ground. </p>

<p>Haeckel also believed that there had once been a large landmass called Lemuria between the continents of Africa and Asia.  In his view, Lemuria  had since become submerged, leaving the modern islands of Madagascar and the East Indies as its only remains.  The idea of submerged continents was not unusual for the late 19th-century, as people struggled to understand the character of biological diversity present in the world and why there were such striking similarities between animals that were geographically dispersed.  The geographical distribution of marsupial fossils in South America and Australia is an example of this sort of problem, and one that was not solved until the second half of the 20th century when continental drift reconstructions suggested that ancient marsupials had used Antarctica as a conduit between the other two continents.  Not only did such theories make sense of modern distributions, they were confirmed with later discoveries of marsupial fossils in Antarctica.</p>

<p>In any case, in 1888 Dubois joined the army and set out for the Dutch East Indies to pursue his ideas.  For the next two years, he would comb Sumatra attempting to locate the hominin remains that Haeckel promised would be there. In hindsight, what Dubois was attempting was something that had never been done before: discovery of hominin material through the tools of archaeological excavation.  Up to this point, all of the human fossils had been found on the surface, eroding out of the side of a bank, or as a result of farming.  It had not occurred to anyone to go looking for human ancestors.  </p>

<p>Now, with his supply of prison workers dwindling due to desertion and fever, he had almost run out of options and was on the verge of failure.  Using almost all of his remaining resources, he decided to abandon his excavations on Sumatra and turn to the nearby island of Java.  Emboldened by the fact that early modern human fossils had been discovered there (at Wadjak), he arrived and settled in at Trinil, on the banks of the Solo River, in 1890. </p>

<p class="caption-right"><img src="http://biologos.org/uploads/static-content/kidder_10_1_1.jpg" alt="" height="377" width="318"  /><br />Figure 1: Dubois' <em>Pithecanthropus erectus</em></p>

<p>The very next year, Dubois’ long-standing efforts were finally rewarded, first with the discovery of a skullcap (calvaria) of a hominin cranium, and then with an intact femur (Figure 1).  Judging by what he knew of cranial anatomy, Dubois estimated that the skull would have been approximately 900 cubic centimeters (cc) in volume, placing it below even the lowest threshold of modern humans.  Further, he noticed that it was not like modern humans in shape, being too long and low. He concluded that it showed “evidence of a form intermediate between man and the anthropoid apes” (Dubois, 1896). Dubois envisioned a sequence of forms in which the gibbon gave rise to a form of chimpanzee called <em>Anthropopithecus sivalensis</em>, which then gave rise to the form represented by the Trinil remains, after which <em>Homo sapiens</em> arose (Turner, 1895).  </p>

<p>Dubois spent the next twenty years on the road with his find, trying to drum up support for its place in human prehistory.  As with Raymond Dart’s discovery of the first australopithecine thirty-three years later, Dubois did not receive a warm reception.  Most critics simply said that he had gotten it wrong and that the femur did not belong to the same individual as the obviously-primitive skull cap. Some of the criticism Dubois suffered could have been mitigated had he been more open to sharing the Trinil materials; but, instead, he allowed very little access to the bones, so that very few people knew exactly what they looked like. Adding to Dubois’s credibility problems was the 1911 “discovery” of Piltdown.  This intentional hoax turned the paleoanthropology world on its head for forty years, sending researchers down innumerable rabbit holes.  As I noted in a <a href="http://biologos.org/blog/the-dispersal-of-the-australopithecines">previous post</a>, the Piltdown remains made all of the other hominin finds appear too “ape-like” to be on the road to humanity and informed many opinions about finds such as those from Trinil.  </p>

<p>On the other hand, some critics of Dubois’ new hominin claim were vicious, and questioned both his academic abilities and his judgment (Shipman & Storm, 2002)—in addition to the interpretation of the find itself. It was in reference to Dubois’ work that the term “Missing Link” was first used with reference to a particular human fossil, originating with Charles Lyell (1863) and describing palaeontological gaps.  And ironically, it was in one of the most stinging criticisms of Dubois’ work that the name that would eventually stick was first used: “<em>Homo erectus</em>.” Eventually, many other finds in the same general area and across Southeast Asia demonstrated that what Dubois had found <em>was</em> a real, previously-unknown hominin form, and the first to colonize the Asian continent and the islands leading off towards Oceania. </p>

<h3><em>Homo erectus</em> across South East Asia: </h3>

<p class="caption-left"><img src="http://biologos.org/uploads/static-content/kidder_10_1_2.jpg" alt="" height="180" width="215"  /><br />Figure 2: Sangiran 17</p>

<h4><em>Sangiran</em></h4>

<p>The earliest point at which <em>Homo erectus</em> appears to have begun to colonize the greater East Asian region is around 1.8 million years ago, represented first by the partial child’s skull found at the site of Modjokerto, and then, at around 1.66 million years ago, at the site of Sangiran, in Trinil, where Dubois had made his landmark discovery.  This site was rich, yielding the remains of many crania, perhaps best represented by Sangiran 17 (Figure 2), an almost complete skull.  </p>

<p>The material from the Sangiran site is very diverse morphologically, with some crania having capacities of as little as 700 to 800 cc, and other, larger heads with volumes in the range of 1000 cc. As with the late <em>Homo ergaster</em> finds from Africa, the remains from Sangiran yielded crania that were still widest at their bases, possessing large brow ridges. Some have thick cranial bones and are very robust (Sangiran 4), while others are very gracile (Sangiran 31).  What this variation means is not clear, but most workers believe it represents a very diverse diachronic population (that is, one group living and moving around over a long period) rather than separate species inhabiting the area.  The Sangiran site yielded fossil material in an almost continuous succession from approximately 1.66 million years ago to less than 800,000 years ago.  </p>

<p>Because the area of the excavations—the Sangiran Dome—is a volcanic deposit, the layers have been securely dated by the <a href="http://en.wikipedia.org/wiki/40Ar/39Ar"><sup>40</sup>Ar/<sup>39</sup>Ar method</a>, although questions remain about the historical sequence and distribution of other animals that lived there through the ages (its <a href="http://en.wikipedia.org/wiki/Faunal_succession">faunal succession</a>).  The problem is that many of the fossils were not found in context, and relating them directly to the stratigraphy is tenuous.  Despite this, most workers are comfortable with the earliest hominins in the region being at least 1.5 million years old.  </p>

<p>One of the things hampering workers in this region is the comparative paucity of recovered stone tools.  Those that have been found suggest a technological stage similar to the late Oldowan design, equivalent to that being created by the <em>Homo ergaster</em> populations inhabiting the area of Dmanisi and East Africa.  Unfortunately, none of the tools have been associated with the hominins directly so it is not exactly clear who made them.  </p>

<p class="caption-left"><img src="http://biologos.org/uploads/static-content/kidder_10_1_3.jpg" alt="" height="343" width="228"  /><br />Figure 3: Sambungmacan 3</p>

<h4><em>Sambungmacan</em></h4>

<p>Another major find from the area where Dubois brought <em>Homo erectus</em> to light is the cranium from the site of Sambungmachan.  This skull was reportedly found in 1977 but was then illegally sold to the antiquities market, where is spent considerable time in different collections before being “rediscovered” in 1998—in a New York nature curio shop called Maxilla and Mandible, Inc. (Delson et al., 2001).  This was an almost-complete calvaria (Figure 3), with only part of the base missing.  It is equivalent in size to the fossils from Sangiran, with a cranial capacity of around 1000 cc.  It has a large brow ridge extending all of the way across the top of the eyes, a long, low cranium with a sloping forehead and a maximum width near the cranial base—all features that are also characteristic of the late African <em>H. ergaster</em> and Sangiran crania.  Although we will never know exactly how old this cranium is, its morphology is consistent with that of the material from Sangiran.  </p>

<p class="caption-right"><img src="http://biologos.org/uploads/static-content/kidder_10_1_4.jpg" alt="" height="185" width="233"  /><br />Figure 4: Ngandong 6</p>

<h4><em>Ngandong</em></h4>

<p>Later in time, but also located on the Solo River, is the site of Ngandong, excavated by Oppenoorth in the early 1930s.  At this site, fourteen calvaria have been discovered, all of which show advanced <em>Homo erectus</em> characteristics: long and low in shape, with thick-bones and a distinctive brow-ridge. (Figure 4). As with the other Indonesian finds, dating the Ngandong material has been problematic.  The deposits at the site were originally thought to be around 100,000 years old, but this interpretation was turned on its head in 1996, when Swisher and colleagues claimed that the deposits were no older than between 27,000 and 53,000 years old (Swisher et al., 1996).  These age estimations were made on the associated fauna, however, and as Rainer Grün and the late Alan Thorne pointed out, the faunal material does not match the skulls either in color or in texture and is likely not from the same time.  Recently, Swisher and colleagues revisited the dating of the site and derived internally-consistent dates of at least 143,000 years before the present (Indriati et al., 2011).  As with the Trinil remains, however, there are no associated stone tools.  </p>

<h3><em>Homo erectus</em> in China</h3>

<p>The Chinese <em>Homo erectus</em> material is very widely scattered and working in the region has presented many difficulties for researchers in terms of transport, language barriers and funding.  Consequently, we know less about this region and its previous inhabitants than we do about most other areas of the Old World.  Although there are between ten and fifteen sites that have yielded <em>Homo erectus</em> material, I will only touch on the most important ones.  </p>

<h4><em>Lantian</em>:</h4>

<p class="caption-right"><img src="http://biologos.org/uploads/static-content/kidder_10_1_5.jpg" alt="" height="164" width="192"  /><br />Figure 5: Lantian</p>

<p>In the early 1960s, a cranium and mandible were found in the cave of Lantian, Shaanxi province, whose characteristics matched other remains from China designated as <em>Homo erectus</em>.  Paleomagnetic dating has yielded a date no earlier than 1.15 million years ago for the skull, with the consensus being that it is around 800,000 years old.  A date of approximately 650,000 years before the present was derived for the mandible. The cranium is heavily encrusted and suffered from postmortem deformation (Figure 5).  When reconstituted, it was found to have a capacity of around 780 cc (low for <em>Homo erectus</em>) and the bones on the sides of the head are the thickest yet recorded. At this site some flake tools, mammal remains, and an ash deposit were all recovered, suggesting hunting and control of fire.  </p>

<p class="caption-left"><img src="http://biologos.org/uploads/static-content/kidder_10_1_6.jpg" alt="" height="144" width="204"  /><br />Figure 5: Hexian</p>

<h4><em>Hexian</em></h4>
	
<p>Another almost-complete calvaria was found at Longtandong cave in the province of Hé Xiàn, dated to between 400,000 and 500,000 years ago.  This find exemplifies typical <em>Homo erectus</em> in many ways in that it is long and low, with heavy muscle markings toward the base and the rear of the skull (Figure 6).  The cranial capacity is around 1000 cc, a third-again greater than that of the Lantian calvaria.  Its cranial shape is very similar to those found in Southeast Asia, suggesting that it straddles the Southeast Asian and Chinese boundary.</p>

<p>While both Lantian and Hexian were significant finds, another site in China boasted the single largest collection of <em>Homo erectus</em> fossils ever found at one site, as well as presenting one of the greatest mysteries in paleoanthropology.  Tomorrow, in the conclusion of our look at <em>Homo erectus</em> in Asia, we’ll peer into the Zhoukoudian caves and consider how this species fits into the lineage of man.
</p>]]></content:encoded>
        <pubDate>Sun, 29 Jul 12 04:59:44 -0700</pubDate>
        <dc:creator>James Kidder</dc:creator>
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        <title>What evidence do we have for evolution besides fossils and genes?</title>
        <link>http://biologos.org/questions/what&#45;evidence&#45;do&#45;we&#45;have&#45;for&#45;evolution&#45;besides&#45;fossils&#45;and&#45;genes?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/questions/what&#45;evidence&#45;do&#45;we&#45;have&#45;for&#45;evolution&#45;besides&#45;fossils&#45;and&#45;genes?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Scientists have found multiple lines of evidence for evolution, not just one or two.  These types of evidence are independent of each other, coming from sources as different as ancient fossils and modern genetics labs. Evidence also comes from comparing the anatomy of creatures living today.  All creatures with four limbs (whether mammals, birds, or reptiles) have the same bone structure in each limb, pointing to their descent from a common ancestor. More evidence comes from biogeography.  Isolated islands are missing common species found on the mainland, but are filled with many unique species that can be related by a common ancestor. Finally, evidence comes from embryonic development.  As an embryo of a mammal grows, its heart develops through stages similar to fish, amphibians, and reptiles.  God’s creation declares the history of life in many different ways. All these ways are pointing to a consistent picture of God creating through evolution.</description>
        <content:encoded><![CDATA[<em>Coming soon.</em>]]></content:encoded>
        <pubDate>Fri, 13 Jul 12 13:25:46 -0700</pubDate>
        <dc:creator></dc:creator>
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        <title>The Fossil Record</title>
        <link>http://biologos.org/blog/the&#45;fossil&#45;record?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/the&#45;fossil&#45;record?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>There are two opposite errors which need to be countered about the fossil record: 1) that it is so incomplete as to be of no value in interpreting patterns and trends in the history of life, and 2) that it is so good that we should expect a relatively complete record of the details of evolutionary transitions within all or most lineages.</description>
        <content:encoded><![CDATA[<h3>The Fossil Record:  Is there enough evidence ?</h3>

<p>There are two opposite errors which need to be countered about the fossil record: 1) that it is so incomplete as to be of no value in interpreting patterns and trends in the history of life, and 2) that it is so good that we should expect a relatively complete record of the details of evolutionary transitions within all or most lineages.</p>

<p>What then is the quality of the fossil record?  It can be confidently stated that only a very small fraction of the species that once lived on Earth have been preserved in the rock record and subsequently discovered and described by <a onmouseover="toggle_visibility('pop1');" onmouseout="toggle_visibility('pop1');">science</a>.</p>

<div class="see-also" id="pop1" style="display:none;">A more expanded discussion of this topic can be found in Miller, K.B., 2003, “Common descent, transitional forms, and the fossil record,” IN, K.B. Miller (ed.), <em>Perspectives on an Evolving Crreation</em>, Wm. B. Eerdmans, Grand Rapids.</div>

<p>There is an entire field of scientific research referred to as "taphonomy" -- literally, "the study of death."   Taphonomic research includes investigating those processes active from the time of death of an organism until its final burial by sediment.  These processes include decomposition, scavenging, mechanical destruction, transportation, and chemical dissolution and alteration.  The ways in which the remains of organisms are subsequently mechanically and chemically altered after burial are also examined -- including the various processes of fossilization.  Burial and "fossilization" of an organism's remains in no way guarantees its ultimate preservation as a fossil.  Processes such as dissolution and recrystallization can remove all record of fossils from the rock.  What we collect as fossils are thus the "lucky" organisms that have avoided the wide spectrum of destructive pre- and post-depositional processes arrayed against them.</p>

<p>Soft-bodied organisms, and organisms with non-mineralized skeletons have very little chance of preservation under most environmental conditions.   Until the Cambrian nearly all organisms were soft-bodied, and even today the majority of species in marine communities are soft-bodied.  The discovery of new soft-bodied fossil localities is always met with great enthusiasm.  These localities typically turn up new species with unusual morphologies, and new higher taxa can be erected on the basis of a few specimens!  Such localities are also erratically and widely spaced geographically and in geologic time.</p>

<p>Even those organisms with preservable hard parts are unlikely to be preserved under "normal" conditions.  Studies of the fate of clam shells in shallow coastal waters reveal that shells are rapidly destroyed by scavenging, boring, chemical dissolution and breakage.  Occasional burial during major storm events is one process that favors the incorporation of shells into the sedimentary record, and their ultimate preservation as fossils.  Getting terrestrial vertebrate material into the fossil record is even more difficult.  The terrestrial environment is a very destructive one: with decomposition and scavenging together with physical and chemical destruction by weathering.</p>

<p>The potential for fossil preservation varies dramatically from environment to environment.  Preservation is enhanced under conditions that limit destructive physical and biological processes.  Thus marine and fresh water environments with low oxygen levels, high salinities, or relatively high rates of sediment deposition favor preservation.  Similarly, in some environments biochemical conditions can favor the early mineralization of skeletons and even soft tissues by a variety of compounds (eg. carbonate, silica, pyrite, and phosphate).  The likelihood of preservation is thus highly variable.  As a result, the fossil record is biased toward sampling the biota of certain types of environments, and against sampling the biota of others.</p>

<p>In addition to these preservational biases, the erosion, deformation and metamorphism of originally fossiliferous sedimentary rock have eliminated significant portions of the fossil record over geologic time.  Furthermore, much of the fossil-bearing sedimentary record is hidden in the subsurface, or located in poorly accessible or little studied geographic areas.  For these reasons, of those once-living species actually preserved in the fossil record, only a small portion have been discovered and described by science.  However, there is also the promise of continued new and important discovery.</p>

<p>The forces arrayed against fossil preservation also guarantee that the earliest fossils known for a given animal group will always date to some time after that group first evolved.  The fossil record always provides only minimum ages for the first appearance of organisms.</p>

<p>Because of the biases of the fossil record, the most abundant and geographically widespread species of hardpart-bearing organisms would tend to be best represented.  Also, short-lived species that belonged to rapidly evolving lines of descent are less likely to be preserved than long-lived stable species.  Because evolutionary change is probably most rapid within small isolated populations, a detailed species-by-species record of such evolutionary transitions is unlikely to be preserved.  Furthermore, capturing such evolutionary events in the fossil record requires the fortuitous sampling of the particular geographic locality where the changes occurred.</p>    

<p>Using the model of a branching tree of life, the expectation is for the preservation of isolated branches on an originally very bushy evolutionary tree.  A few of these branches (lines of descent) would be fairly complete, while most are reconstructed with only very fragmentary evidence.  As a result, the large-scale patterns of evolutionary history can generally be better discerned than the population-by-population or species-by-species transitions.  Evolutionary trends over longer periods of time and across greater anatomical transitions can be followed by reconstructing the sequences in which anatomical features were acquired within an evolving branch of the tree of life.</p>]]></content:encoded>
        <pubDate>Fri, 13 Jul 12 05:00:15 -0700</pubDate>
        <dc:creator>Keith Miller</dc:creator>
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