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        <title>Custom Feed &#45; The BioLogos Forum</title>
    <link>http://biologos.org/resources/find/any/Science Teachers/Blog/sort&#45;by&#45;Newest?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
    <description>This is a custom feed of BioLogos resources. Make a new feed at http://biologos.org/resources/find</description>
    <dc:language>en</dc:language>
    <dc:rights>Copyright 2013</dc:rights>
    <dc:date>2013-05-22T14:13:01-08:00</dc:date>    
    
    

            
            
        
      <item>
        <title>Series: Understanding Randomness</title>
        <link>http://biologos.org/blog/series/immunity&#45;and&#45;evolution&#45;the&#45;same&#45;story?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/immunity&#45;and&#45;evolution&#45;the&#45;same&#45;story?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In this series, Kathryn Applegate addresses the concern that randomness implies the absence of God&apos;s activity and involvement in the natural world.  She begins by clearing up some common misconceptions about the concept of &quot;randomness&quot;, and later focuses on the mechanisms of the immune system to demonstrate that God works through random processes to preserve life.  Far from being an indication of a &quot;godless&quot; universe, one might conclude that randomness is one of God’s favorite mechanisms for creating and sustaining life!</description>
        <content:encoded><![CDATA[<p>Christians often equate randomness with an atheistic worldview, but randomness is an essential feature of many God-ordained biological processes, from the union of egg and sperm during reproduction to the generation of antibodies by the immune system. In fact, based on its prevalence in the natural world, one might conclude that randomness is one of God’s favorite mechanisms for creating life!</p>

<p>Here I want to clarify a few misconceptions about randomness before moving on, in future posts, to describing other biological processes that make use of it.</p>

<h3>Misconception #1</h3>

<p><strong>Randomness is like “God of the Gaps”. With time, advancements in science will allow us to make accurate predictions in previously “random” systems.</strong></p>

<p>Isaac Newton’s famous three laws of motion, described in his 1687 classic <em>Principia Mathematica</em>, have empowered physics students for centuries. Using these and Newton’s universal law of gravitation, you can predict the trajectory of everything from pool balls to planets. By the early nineteenth century, the idea of a “clockwork universe” was firmly established, and scientists believed that with time, science would be unlimited in its predictive power.</p>

<p>Although it could be true that we live in a “clockwork universe,”<sup>1</sup> two developments in the twentieth century shattered our hopes of having a fully <em>predictable</em> universe. The first was quantum mechanics, which describes how things work at an extremely small scale. One of the major discoveries in quantum mechanics was Werner Heisenberg’s “uncertainty principle,” which holds that the more certain one is about the location of a particle, the less certain <em>in principle</em> one can be about its momentum, and vice versa. At the quantum level, then, our predictive powers are ultimately limited.</p>

<p>Another discovery that destroyed all hope for a fully predictable universe was <em>chaos</em>. Mathematically chaotic systems are those which are extremely sensitive to changes in their initial conditions. Even fully deterministic systems can exhibit chaotic behavior and act in unpredictable ways. Consider a famous function, the logistic map<sup>2</sup>:</p>

<p align="center"><img src="http://biologos.org/uploads/static-content/random_equation1.jpg" /></p>

<p>I know equations make people nervous, but stay with me! This one does some fascinating things. Here’s how it works: start with some initial value for x at time t = 0, and plug that in for x(t). Let’s start with <img src="http://biologos.org/uploads/static-content/random_x0.jpg" /> = 0.2. R is just some constant value; let it be 2. Now we use the function to calculate the outcome in the next time step, t = 1:</p>

<p align="center"><img src="http://biologos.org/uploads/static-content/random_equation2.jpg" /></p>

<p>We can use this value as input for the next step, and repeat this process over and over to find the output at each time point.</p>

<p>What happens? The answer is plotted in the figure below on the left. If we follow along the x-axis, which represents time, we see that the value of x goes toward 0.5 and stays there forever.</p>

<p>What if we start with the same <img src="http://biologos.org/uploads/static-content/random_x0.jpg" />, but increase R to 3.1? Following the same process as before, we get a very different result! The middle graph shows that the outcome oscillates between two values over time.</p>

<p>If you make R = 4, the function does something very strange. In the right-most plot, the function still fluctuates up and down, but it begins to look irregular. And if we change the initial condition, <img src="http://biologos.org/uploads/static-content/random_x0.jpg" />, just slightly, from .20 (blue solid line) to 0.2000000001 (red dotted line), we see they are virtually the same until somewhere around t = 14. After that point, they exhibit completely different behavior.</p>

<p align="center"><img alt="" src="http://biologos.org/uploads/static-content/random_graphs.jpg" /></p>

<p>Several observations can be made here. First, the same equation can produce three different classes of behavior, simply by changing R and <img src="http://biologos.org/uploads/static-content/random_x0.jpg" />. These classes are called fixed-point (left), periodic (middle), and chaotic (right). Below the values of R that lead to chaos, the system is not sensitive to the initial value of <img src="http://biologos.org/uploads/static-content/random_x0.jpg" />. Over time, the system will either become a flat line or oscillate.</p>

<p>When R is greater than approximately 3.569946, however, the system becomes chaotic, and the outcome is extremely sensitive to changes in the initial value of <img src="http://biologos.org/uploads/static-content/random_x0.jpg" />. What this means is you would have to know the value of <img src="http://biologos.org/uploads/static-content/random_x0.jpg" /> to <em>infinite</em>&nbsp;precision to predict its long term behavior. Since this is impossible in any kind of real-world application, the detailed behavior of a chaotic system is impossible to predict.</p>

<p>If this is true even for a simple, completely deterministic equation, how much more difficult is it to predict the behavior of a more complicated chaotic system, like a hurricane! Even the poor weathermen here in San Diego get it wrong sometimes, and the weather here doesn’t change very much.</p>

<p>So, between the uncertainty principle in quantum mechanics, and the sensitivity of chaotic systems, we now know that we are fundamentally limited in our predictive power––not just temporarily. Whether the systems we study are <em>truly</em> indeterministic is another (interesting) question, which of course has implications for divine action.</p>

<h3>Misconception #2</h3>

<p><strong>Randomness means anything can happen, and all possibilities are equally likely.</strong></p>

<p>People often think randomness means the outcome is completely open-ended, but you can’t roll a 7 on a 6-sided dice, nor draw a red marble from a bag of blue ones. Even random processes function according to rules. (The logistic map in the last section is another good example.)</p>

<p>Sometimes, the word random is used to mean <em>unbiased</em>. If you want to know who will win a political election, you make sure to poll a random sample of people, not just those hanging around a Tea Party rally. But the word random doesn’t have to mean that all possibilities are equally likely. When maternal and paternal chromosomes get together during conception, they exchange long sequences of DNA in a process called recombination. We now know that recombination happens more often in some places of the genome than others, but the specific sites where it will occur in a given embryo are impossible to predict. So recombination is random in the sense that it is unpredictable, but not in the sense that all outcomes are equally likely.</p>

<h3>Misconception #3</h3>

<p><strong>Randomness always leads to disorder.</strong></p>

<p>On the contrary, randomness often leads to exquisitely ordered and complex outcomes. In my next post, we'll watch a <a href="http://www.youtube.com/watch?v=X-8MP7g8XOE&amp;feature=player_embedded" target="_blank">simulation</a> of viral self-assembly from individual proteins bouncing around in a jar. You could repeat the simulation a thousand times and always get the same result, even though the particular assembly pathway would look different each time. That is, if the starting materials are present and the conditions (temperature, pH, etc) are right, you will always get a beautiful, highly symmetric virus. Random motion is the mechanism used to search “solution space” for a favorable outcome.</p>

<p><img alt="" src="http://biologos.org/uploads/static-content/sierpinksi.jpg" style="margin: 0pt 20px 20px 0pt; float: left" />Fractals provide another great example of patterns emerging from randomness. Fractals are chaotic patterns with the same basic property: no matter how much you “zoom in,” the overall structure is maintained. Clouds, trees, crystals, and snow flakes are naturally-occurring fractals.</p>

<p>You can construct a fractal like the <a href="http://en.wikipedia.org/wiki/Sierpinski_triangle" target="_blank">Sierpinski triangle</a> shown at left by rolling a die and following simple rules.<sup>3</sup> If 100 people in a room independently rolled a die 100 times and followed the rules, they would all have different sequences of rolls, but all would end up with the same pattern!</p>

<p>Thus, for many random processes, the fine details may be unpredictable along the way, but the macro-level outcome is foreseeable.</p>

<h3>Summary</h3>

<p>“Randomness,” when taken to mean unconquerable unpredictability, is inherent in many processes created by God, from hurricanes to viral assembly to genetic recombination to antibody production. Randomness means that the details of the future are unpredictable, and will stay that way regardless of scientific progress. That said, randomness is constrained by rules and often leads to complex patterns and macro-level order. More misconceptions about randomness no doubt lurk in all our minds, leading to suspicion when we hear phrases like, “evolution is random.” But hopefully, this post can help to clarify some of the confusion.</p>

<h3>Notes</h3>

<p class="date">1. Philosophers of physics still debate whether there is some underlying deterministic structure to the universe, or whether events at the quantum level are indeterministic. See <a href="http://plato.stanford.edu/entries/determinism-causal/#QuaMec" target="_blank">http://plato.stanford.edu/entries/determinism-causal/#QuaMec</a>. In either case, we are fundamentally limited in our ability to make predictions about the outcomes of quantum events.<br />
2. The logistic map is one of the best-studied equations in dynamical systems theory. The particular values used in the figure were taken from Melanie Mitchell’s excellent book, <em>Complexity: A Guided Tour</em>, and were created using MATLAB.<br />
3. Thanks to Isaac Yonemoto for pointing this out.</p>
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        <pubDate>Sat, 23 Mar 13 06:00:44 -0700</pubDate>
        <dc:creator>Kathryn Applegate</dc:creator>
        <!--<dc:date>Mar 23, 2013 06:00</dc:date>-->
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            <item>
        <title>Where are the Transitional Fossils?</title>
        <link>http://biologos.org/blog/where&#45;are&#45;the&#45;transitional&#45;fossils?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/where&#45;are&#45;the&#45;transitional&#45;fossils?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>A common argument leveled against the theory of evolution is that scientists have not been able to produce transitional fossils that show the change of one species into another.  In this podcast, we address a common misconception about what transitional fossils actually are.</description>
        <content:encoded><![CDATA[<p align="center"><iframe src="http://player.vimeo.com/video/31875051?title=0&amp;byline=0&amp;portrait=0" width="570" height="428" frameborder="0" webkitAllowFullScreen allowFullScreen></iframe></p>

<p>A common argument leveled against the theory of evolution is that scientists have not been able to produce the expected transitional fossils that show the change of one species into another. If evolution were true, wouldn’t there be instances of clear intermediary species, like, for example, a species that was half whale and half hippo to show the transition between those two? In this BioLogos podcast, Kelsey Luoma addresses this misconception about what a transitional fossil actually is. Rather than a mix between two related species, transitional fossils point back to the common ancestors that modern species share. The fact is that the number of transitional species is massive and it grows with each passing year.  Given the rarity with which organisms are actually fossilized, the amazing thing is actually the completeness of the fossil record, not its incompleteness.  The transitional species story strongly supports, and certainly does not disprove, evolutionary theory. <sup>1</sup></p>

<p class="date">1. To hear the full audio clips which have been referenced go to:</p>
<ul><li><a href="http://www.youtube.com/watch?v=X6EmOQLf25s&feature=BFa&list=PLACF41F3DDBCA4565&lf=results_video&noredirect=1" target="_blank">Rational Response Debate with Kirk Cameron (from Way of the Masters)</a></li>
<li><a href="http://www.youtube.com/watch?v=FN9wyn9xVko&feature=related" target="_blank">Behind the Scenes with Dr. Neil Shubin (from Cincinnati Museum Center)</a></li>
<li><a href="http://www.youtube.com/watch?v=fVNXXLLUYFM' target="_blank">Mark Norell Publishes New Archaeopteryx Findings (from American Museum of Natural Sciences)</a></li>
<li><a href="http://www.youtube.com/watch?v=VmtDGjfMajM" target="_blank">Texas A&M Professor Discusses Findings of Autralopithecus Sediba and its Relationship to Humans (from Texas A&M University)</a></li>
<li>Intro/outro music composed by Martin Minor (<a href="http://www.looperman.com/users/profile/159051" target="_blank">Minor2Go</a>).</li> </ul> </p>

<p><strong>An audio only version of the podcast can be downloaded <a href="http://biologos.org/uploads/resources/fossil_podcast_final.mp3" target="_blank">here</a>.</strong></p>
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        <pubDate>Fri, 01 Feb 13 08:57:28 -0800</pubDate>
        <dc:creator>Kelsey Luoma</dc:creator>
        <!--<dc:date>Feb 01, 2013 08:57</dc:date>-->
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        <title>Worshiping, Growing, and Learning</title>
        <link>http://biologos.org/blog/worshiping&#45;growing&#45;and&#45;learning?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/worshiping&#45;growing&#45;and&#45;learning?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Yesterday, biology professors Randy Moore and Sehoya Cotner raised the concern that workshops focused on evolution&#45;related training do not reach not reach creationism&#45;based biology teachers. Today, we&apos;d like to focus on BioLogos&apos; efforts to address that divide through our Biology by the Sea workshops.</description>
        <content:encoded><![CDATA[<p>Our third annual BioLogy by the Sea teachers’ workshop was another success. Middle and high school teachers from Christian schools came from all over the United States to take part in this weeklong workshop. Last year’s group continued studying biodiversity, while this year’s group studied developmental biology.</p>

<p>Showing Christian schoolteachers that one can be a believer who embraces the Bible as God’s inspired Word and evolution as His creative process has always been a mission of BioLogy by the Sea, the accomplishment of which is never guaranteed. During the first few days, several participants expressed doubt that their faith could be compatible with evolutionary creation. However, as the week came to a close, some of those who had previously denied compatibility seemed to be much more considerate of the notion—if not fully accepting of the idea altogether. If you’ve ever doubted evolution yourself, then you know that such acceptance is no small feat. There are numerous theological and philosophical barriers that must be dealt with, and to think that this could occur in the span of just one week is pretty amazing. Then again, the program had some pretty amazing guest speakers and activities—the most significant of which occurred throughout the week: prayer and worship to the One we all serve, our Lord and Savior Jesus Christ.</p>

<p>While these times served to glorify God and nurture participants’ souls, the week was also filled with activities designed to nurture participants’ minds through the study of biblical passages and biological content. In addition to graduate level courses and accompanying labs in either biodiversity or developmental biology, participants went on field trips to the intertidal zone, the Natural History Museum of Los Angeles County, the La Brea Tar Pits, and the Gaslamp Quarter. Furthermore, presentations given by Dr. Gregg Davidson, professor of geology and geological engineering from the University of Mississippi, and Dr. Mary Schweitzer, paleontologist and associate professor of marine, earth and atmospheric sciences from North Carolina State University, offered key insights into their fields and demonstrated how the tenants of both are based on evidence rather than conjecture.</p>

<p>In short, this year’s BioLogy by the Sea offered another comprehensive look at what it means to be a Christian who accepts the conclusions of mainstream science—not at the expense of our faith in God or His Word, but in light of it. We can only hope that these teachers, who spent an entire week of their summer break with us, left with not only a greater sense of oneness as the body of Christ, but also found new ways to engage their students in matters of science and faith—another facet of the program’s mission. After all, the first step in protecting the next generation from the faith crisis that many seem to experience after they learn about evolution from a secular perspective is showing that it need not be an either-or situation. It’s also an important part of ensuring that Christian young people can rise to the forefront of global scientific research.</p>

<p class="caption-center"><iframe src="http://player.vimeo.com/video/46269101" width="500" height="281" frameborder="0" webkitAllowFullScreen mozallowfullscreen allowFullScreen></iframe></p>]]></content:encoded>
        <pubDate>Wed, 23 Jan 13 07:00:17 -0800</pubDate>
        <dc:creator></dc:creator>
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        <title>Evolution and Creationism in America’s Biology Classrooms</title>
        <link>http://biologos.org/blog/teaching&#45;evolution&#45;and&#45;creationism&#45;in&#45;americas&#45;biology&#45;classrooms?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/teaching&#45;evolution&#45;and&#45;creationism&#45;in&#45;americas&#45;biology&#45;classrooms?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>High school biology courses have a strong and lingering impact on students’ views of evolution and creationism.</description>
        <content:encoded><![CDATA[<p>Although the evolution-creationism controversy has been one of the most abiding controversies in America during the past several decades, public attitudes about evolution and creationism have changed relatively little during that time. Indeed, since 1982, Gallup has consistently reported that 40-47% of Americans endorse young-Earth creationism, 35-40% believe that humans evolved but that God guided that process, and 9-16% believe that humans evolved but that God had no role in the process (Gallup, 2011). Similarly, a Harris Poll reported, “many more people believe in miracles, angels, hell and the devil than in Darwin’s theory of evolution” (Harris Poll, 2009).</p>

<p>These facts persist in the face of educational guidelines in most states that mandate the teaching of evolution, court decisions that have declared the teaching of creationism as unconstitutional and having “no scientific merit or educational value as science [because it] is simply not science” (<em>McLean v. Arkansas Board of Education</em>, 1982), thousands of scientific papers and books that document evidence for evolution, direct observations of evolution, and countless endorsements of evolution (and rejections of creationism) by professional scientific organizations. Decades of costly science education reform have not reformed popular acceptance of evolution: most of the public continues to see religion and mainstream science as diametrically opposed, and when presented with that choice, most will choose the supernatural over science, even when it means rejecting the foundations of modern biology. Why?</p>

<p>Many factors – for example, the media and religion -- influence people’s beliefs about the evolution and creationism, as well as their acceptance of science. One of these influences is education. What are students taught about evolution and creationism?</p>


<h3>Evolution and Creationism in High School Biology Courses</h3>
<p>Students have widely variable introductions to evolution in their high school biology courses. Although most states have educational guidelines that mandate the teaching of evolution, only about 70% of students entering college report that their high school biology courses included evolution (in some form) and not creationism. Although educational guidelines provide important support for teachers wanting to teach evolution, these guidelines are irrelevant to many biology teachers and administrators. </p>

<div class="see-also">For a detailed account of how skeptical Christian college students navigate the many social and religious concerns to reconcile their faith with evolutionary creation, see <a href="http://biologos.org/blog/series/evolution-and-personal-faith-christian-university-students">Mark Winslow’s series</a>.</div>

<p>Approximately 20% of students are taught neither creationism nor evolution in their high school biology courses (Moore, 2007). Another “cautious 60%” of biology teachers want to avoid controversy, and neither advocate evolution nor explicitly endorse nonscientific alternatives (Berkman and Plutzer, 2011). Even when teachers do teach evolution, they often cover the topic in a trivial or disparaging way (Bandoli, 2008, and references therein), thereby perpetuating a cycle of ignorance reinforced by popular opinion (Berkman and Plutzer, 2011). When these students arrive on college campuses, they are predisposed to remain skeptical of evolution, for their perceptions and prior knowledge strongly influence their learning.  This is especially important for evolution, for many students view evolution as negative and undesirable (Brem, Ranney, and Schindel, 2003) and sense an “overlap of some ideas that the theory [of evolution] advocates with other social, epistemological, and religious beliefs” (Hakoyem and BouJaode, 2008).</p>


<h3>The Creationists Down the Hall</h3>
<p>Most Americans reject evolution, and most biologists have grown accustomed to headlines such as “Four in 10 Americans Believe in Strict Creationism” (Gallup, 2010) and “In U.S., 46% Hold Creationist View of Human Origins” (Gallup, 2012). However, most biologists are less familiar with the fact that creationism is thriving among undergraduate biology majors (Verhey, 2005; also see above), biology graduate students (Gregory and Ellis, 2009), and former students who have become biology teachers (Berkman, Pacheco, and Plutzer, 2008; Moore, 2007, and references therein).</p> 

<p>Despite their training, many biology teachers are creationists. Indeed, fully one-sixth of biology teachers are young-Earth creationists (Berkman, Pacheco, and Plutzer, 2008), and a presentation of young-Earth creationism as legitimate science would presumably confuse students about the basic tenets of science in general, and of evolution in particular. Because teachers’ personal views about a subject affect their teaching of the subject (Carlesen, 1991; Grossman, 1989), and because teachers with strong religious convictions accept evolution less often than their less-religious peers (Trani, 2004), it is not surprising that many of today’s biology teachers explicitly teach creationism in their biology courses. Although few biology teachers in public schools teach creationism without mentioning evolution, 20-25% of today’s biology teachers teach evolution <em>and</em> creationism in their courses (Moore, 2007, and references therein). Although a handful of creationism-based biology teachers are confronted for their malpractice (e.g., Rodney LeVake; see Moore, 2004), most are tolerated — and sometimes even encouraged — to teach creationism, possibly because of pressure from the public and administrators to ignore evolution and/or teach creationism (Cavanagh, 2005, Verango and Toppo, 2005). As Don Aguillard, the lead plaintiff in <em>Edwards v. Aguillard</em> (1987) noted in 1999 (Moore, 1999), “Creationism is alive and well among biology teachers.”</p>

<h3>When Biology Teachers Teach Creationism, What Do They Teach?</h3>
<p>When biology teachers teach creationism, they usually present only a particular version of the Judeo-Christian creation story. Moreover, these stories are often presented as a scientific alternative to evolution (Moore, 2008), despite the fact that creation science has “no scientific or educational value as science [because it] is simply not science” (<em>McLean v. Arkansas Board of Education</em>, 1982). Relatively few biology teachers who teach creationism present it as religious idea, philosophical idea, or as part of a survey of several religions (Moore, 2008).  They do not “teach the controversy,” in other words, but present the relationship between modern evolutionary biology and their faith as one of self-evident conflict, assuming (and teaching) that their version of creationism is the only true alternative.</p>

<h3>Does It Matter When Biology Teachers Teach Creationism?</h3>
<p>Yes—high school biology courses have a strong and lingering impact on students’ views of evolution and creationism (Moore and Cotner, 2009). Students who were taught creationism in high school know significantly less about evolution when they enter college than do students who were taught evolution in high school. Similarly, students who claimed that most of their knowledge of evolution came from non-school sources (e.g., the media, church) knew less about evolution than did students who claimed that their primary source of knowledge about evolution was their high school biology class (Moore, Cotner, and Bates, 2009). </p>

<h3>Solving the Problem?</h3>
<p>Several studies have claimed that additional evolution-related training will help improve the teaching of evolution in high schools. We are not nearly as optimistic. Although workshops and short-courses presumably help and encourage teachers willing to consider teaching evolution, focused instruction about evolution often does not affect students’ or teachers’ acceptance of evolution (Alters and Nelson, 2002; Chinsamy and Plaganyi, 2008). Moreover, these workshops will not reach creationism-based biology teachers who are dedicated to substituting their religious beliefs for science in their classes. </p>

<p>In our experience, these teachers rarely attend such workshops, even if they are paid to do so, and even then their acceptance of evolution is unaffected. After all, these teachers have access to and know the evidence for evolution – it’s widely available, including in the textbooks that they adopt and use in their classes – and they are not convinced by that evidence. We know of no evidence that the availability of such solely science-focused workshops, seminars, and other forms of evolution-related education will significantly affect what creationism-based biology teachers teach. Since the impediments to better teaching of evolution are primarily the philosophical and religious views of biology teachers, programs that do not address the more personal, “non-science” issues of science educators directly and effectively are likely to have little impact on what students learn in high-school biology classrooms.  Instead, if further fact-based instruction in evolution is part of the answer, it is likely to be most effective with young children, who are developmentally primed to seek explanations for natural phenomena.  However, evolution instruction is essentially absent prior to high-school biology; by high school, a student’s teleological demands have likely been met by supernatural explanations, creating a cycle of adults who know little about evolution and teach creationism-flavored biology.</p>

<p>Creationism has long been popular among biology teachers (Moore, 2007), and there is no evidence that improved state educational standards, proclamations by professional organizations, and decades of science education reform have made much difference.  As John Scopes commented almost 50 years ago, “I don’t think the world changes very rapidly” (Anonymous, 1966).</p>

<p><strong><a href="#notes"-1" onclick="toggle_visibility('notes-1');">View Literature Cited</a></strong></p>
<div style="display:none;" id="notes-1">
<p>Alters, B.J., and C.E. Nelson. 2002. Perspective: Teaching evolution in higher education. <em>Evolution</em> 56, 1891-901.</p>
<p>Anonymous. 1966. Monkey trial, 1966 style. <em>Christianity Today</em> 10 (15), 45-46.</p>
<p>Bandoli, J.H. 2008. Do state science standards matter? <em>American Biology Teacher</em> 70, 212-216.</p>
<p>Berkman, M.B. and E. Plutzer. 2011. Defeating creationism in the courtroom, but not in the classroom. <em>Science</em> 331, 404-405.</p>
<p>Berkman, M.B., J.S. Pacheco, & E. Plutzer. 2008. Evolution and creationism in America’s classrooms: A national portrait. <em>PLoS Biology</em> 6 (5), e124 doi:10.1371/journal.pbio.0060124</p>
<p>Brem, S.K., M. Ranney, & J. Schindel. 2003. Perceived consequences of evolution: College students perceive negative personal and social impact in evolutionary theory. <em>Science Education</em> 87 (2), 181-206.</p>
<p>Carlesen, S.W. 1991. Effects of new biology teachers’ subject-matter knowledge on curricular planning. <em>Science Education</em> 757, 631-647.</p>
<p>Cavanagh, S. 2005. Treatment of evolution inconsistent. <em>Education Week</em> 25 (11), 1, 26-27.</p>
<p>Chinsamy, A. and E. Plaganyi. 2008. Accepting evolution. <em>Evolution</em> 62, 248-254.</p>
<p><em>Edwards v. Aguillard</em>, 482 U.S. 578 (1987).</p>
<p>Gallup Poll. 2010. Four in 10 Americans believe in strict creationism. Retrieved December 26, 2012, from <a href="http://gallup.com/poll/145286/Four-Americans-Believe-Strict-Creationism.aspx">http://gallup.com/poll/145286/Four-Americans-Believe-Strict-Creationism.aspx</a></p>
<p>Gallup Poll. 2011. Evolution, creationism, intelligent design. Retrieved December 26, 2012, from <a href="http://gallup.com/poll/21814/evolution-creaionism-intelligent-design.aspx">http://gallup.com/poll/21814/evolution-creaionism-intelligent-design.aspx</a></p>
<p>Gallup Poll. 2012. In U.S., 46% hold creationist view of human origins. Retrieved December 26, 2012, from <a href="http://gallup.com/poll/155003/Hold-Creationist-View-Human-Origins.aspx">http://gallup.com/poll/155003/Hold-Creationist-View-Human-Origins.aspx</a></p>
<p>Gregory, T.R., and C.A.J. Ellis. 2009. Conceptions of evolution among science graduate students. <em>BioScience</em> 59 (9), 792-799.</p>
<p>Grossman, P.L. 1989. Learning to teach without teacher education. <em>Teachers College Record</em> 91, 191-208.</p>
<p>Harris Poll. 2009. What people do and do not believe in. Retrieved December 24, 2009, from <a href="http://www.harrisinteractive.com/harris_poll?pubs/Harris_Poll_2009_12_15.pdf">http://www.harrisinteractive.com/harris_poll?pubs/Harris_Poll_2009_12_15.pdf</a></p>
<p>Hokayem, H., & S. BouJaoude. 2008. College students’ perceptions of the theory of evolution. <em>Journal of Research in Science Teaching</em> 45, 395-419.</p>
<p><em>McLean v. Arkansas Board of Education</em>, 529 F. Supp. 1255, (E.D. Ark 1982). </p>
<p>Moore, R. 1999. The courage and convictions of Don Aguillard. <em>American Biology Teacher</em> 61, 166-174.</p>
<p>Moore, R. 2004. Standing up for our profession: A talk with Ken Hubert. <em>American Biology Teacher</em> 66, 325-327.</p>
<p>Moore, R. 2007. What are students taught about evolution? <em>McGill Journal of Education</em> 42, 177-186.</p>
<p>Moore, R. 2008. Creationism in the biology classroom: What do teachers teach and how do they teach it? <em>American Biology Teacher</em> 70, 69-73.</p>
<p>Moore, R. and S. Cotner. 2009. Rejecting Darwin: The occurrence and impact of creationism in high school biology classrooms. <em>American Biology Teacher</em> 71, 1-4.</p>
<p>Moore, R., S. Cotner, and A. Bates. 2009. The influence of religion and high school biology courses on students’ knowledge of evolution when they enter college. <em>Journal of Effective Teaching</em> 9 (2), 3-11. </p>
<p>Trani, R. 2004. I won’t teach evolution; it’s against my religion. And now for the rest of the story. <em>American Biology Teacher</em> 66, 419-427.</p>
<p>Verango, D. and G. Toppo. 2005. “Call to arms” on evolution. <em>USA Today</em>, March 24, p. B5.</p>
<p>Verhey, S.D. 2005. The effect of engaging prior learning on student attitudes toward creationism and evolution. <em>BioScience</em> 55, 996-1003. </p></div>]]></content:encoded>
        <pubDate>Tue, 22 Jan 13 04:44:18 -0800</pubDate>
        <dc:creator>Randy Moore, Cotner, Sehoya</dc:creator>
        <!--<dc:date>Jan 22, 2013 04:44</dc:date>-->
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        <title>Introducing the BioLogos Navigator</title>
        <link>http://biologos.org/blog/introducing&#45;the&#45;biologos&#45;navigator?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/introducing&#45;the&#45;biologos&#45;navigator?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Part of BioLogos mission is to show how all things hold together in Christ—to show how a Christian worldview integrates the knowledge we have of God through the Scriptures with the knowledge we have of God through the other areas in which He reveals himself as Creator and Redeemer.</description>
        <content:encoded><![CDATA[<p>When we at BioLogos affirm that, “all things hold together in Christ,” what do we mean?  In short, we believe that there is no aspect of creation or of human experience that does not fall under the sovereignty and authority of God, and that He does not claim for himself and intend for redemption.  After all, at his resurrection, Jesus himself said, “All authority in heaven and on earth has been given to me” (Matthew 28:18). But more than just proclaiming God’s sovereignty over creation, we believe that God is revealing himself in every aspect of creation, as well—that led by the Holy Spirit, we will find pointers to God wherever we turn our gaze.  Christian knowledge, therefore, is not limited to the study of the Scriptures or of Church History, but includes the study of the natural world and of all of human culture, as well.  In fact, to fully appreciate God’s abundant grace and providence, we need to be looking to all of these domains of knowledge as domains of revelation, too. </p>

<p>Part of the BioLogos mission, then, is to show <em>how</em> all things hold together in Christ—to show how a Christian worldview integrates the knowledge we have of God through the Scriptures with the knowledge we have of God through the other areas in which he reveals himself as Creator and Redeemer.  Our website contains a wealth of Christian scholarship in a wide range of fields—from biology, to cosmology, to mathematics, to Biblical studies, to history, to theology—all demonstrating that the best contemporary science is compatible with Biblical Christian faith. But today we introduce a new tool—the BioLogos Navigator—to make these posts more accessible, and to show how they inter-relate (see sidebar on the right).  </p>

<p>Modeled on the astrolabes that early astronomers and sailors used to orient themselves under the heavens, our Navigator makes the cross of Christ the starting point by which we understand the cosmos.  Each of the four arms of the cross represents one of the domains of knowledge and experience through which God reveals himself to the world: Scripture, the Church, Nature and Culture.  These domains are not in opposition to each other, but are complementary and inter-related areas through which we can recognize God at work in the world. Linking these four domains is a network of specific topics relevant to the science and faith conversation.  Their arrangement suggests how each relates to the four domains but also to teach other.  Clicking on an individual topic tag highlights not only that topic, but other topics that are linked to it—sometimes in unexpected ways.</p>

<p>Clicking a topic tag a second time takes you to the Topic Landing page: a curated selection of the best resources on that subject from the BioLogos archives.  (The image above shows the <em><a href="http://biologos.org/navigator/Christianity+&+Science+-+Then+and+Now">Christianity & Science—Then and Now</a></em> Landing page, complete with Navigator and highlighted tags.) At the bottom of each page is a link to our Resource Finder, where you can investigate additional materials on that topic, as well. By exploring the relationships between the topics on the Navigator itself, and by delving deep into each topic via the resources presented on the landing pages, readers can focus on specific aspects of the harmony between science and Christian faith while also getting the wide view of God’s providential work in all things in the heavens and on the earth. </p>

<p>In the coming days and weeks, the BioLogos Navigator will be more fully integrated into the rest of the site, accessible directly from the Forum homepage and from the Resources dropdown list at the top of every page.  We’ll also be including features that help place each blog post on the “knowledge map” defined by the domains and topic tags.  Finally, the Topic Pages will also be periodically updated with the latest and best new materials in each topic. In the meantime, <strong>you can access the Navigator by clicking anywhere on the small image in the sidebar, above</strong>, and find a link to this post at the upper right corner of our homepage.  So take some time to explore our site with this new tool, which we think will to help orient our readers in the science and faith conversation, while always pointing to Jesus, the Christ, through whom all things were made.</p><br />]]></content:encoded>
        <pubDate>Thu, 27 Dec 12 06:19:49 -0800</pubDate>
        <dc:creator>Mark Sprinkle</dc:creator>
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        <title>Katharine Hayhoe: Evangelical Christian, Climate Scientist</title>
        <link>http://biologos.org/blog/kathryn&#45;hayhoe&#45;evangelical&#45;christians&#45;climate&#45;scientist?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/kathryn&#45;hayhoe&#45;evangelical&#45;christians&#45;climate&#45;scientist?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>As an Evangelical and a scientist, Katharine Hayhoe is already a member of a rare breed.  As a climate change researcher who is also married to an evangelical Christian pastor, she is nearly one of a kind.</description>
        <content:encoded><![CDATA[<p>As an evangelical scientist, Katharine Hayhoe is already a member of a rare breed.  As a climate change researcher who is also married to an evangelical Christian pastor, she is nearly one of a kind.  In these three videos, Hayhoe divulges her beliefs about God, climate change, and the difficulties of believing in both those things.</p>

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<p>The first video, “10 Questions with Katherine Hayhoe”, introduces the scientist in a brief and lighthearted interview.  Hayhoe is presented with 10 questions concerning her personal life and beliefs.  When asked, she explains that one thing people should know about Christianity is that having a relationship with the God of the universe is one of the most incredible experiences that a person can have. As the video unfolds, the viewer quickly begins to realize that, despite her unique profession of two seemingly incompatible beliefs, Hayhoe is a remarkably sane and “normal” individual.  Her role model, she explains, is her father-- the person who first introduced her to science and showed her that it could be “really cool”.  On a more serious note, the scientist admits that being both a scientist and a Christian can be difficult.  The most frustrating thing about her position, she says, is the amount of disinformation which is targeted at her very own Christian community.</p>
 
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<p>In the second video, “Climate Change Evangelist”, Katharine Hayhoe delves into deeper discussion of the perceived conflict between climate change and Christian faith.  She explains that admitting her identity as a Christian scientist can be uncomfortable.  Since evangelicals are the targets of much disinformation concerning science in general -- and specifically the science surrounding climate change -- many people in the church have a misguided view of the subject and do not look kindly at her career choice.  One woman encountered by Hayhoe at a church in Texas, for example, believed that global warming was a lie taught in schools to mislead her children.  In an effort to realign misguided views like these, Katharine Hayhoe and her husband wrote a book addressing the deep-rooted emotions often associated with climate change.  People fear that addressing the climate issue will bring forth changes in the economy and uproot their way of life.  However, Hayhoe encourages her viewers to act out of love, as the Bible calls us to do, rather than out of fear.  Acting out of love inspires us to consider the poor and disadvantaged people around the globe when we respond to the reality of a changing climate.</p>

<p align="center"><object width="512" height="288"><param name="movie" value="http://www.pbs.org/wgbh/nova/secretlife/site_media/player.swf"></param><param name="allowFullScreen" value="false"></param><param name="flashvars" value="bgcolor=#000000&amp;autostart=false&amp;showdigits=true&amp;showicons=false&amp;bufferlength=3&amp;fullscreen=true&amp;skin=http://www.pbs.org/wgbh/nova/secretlife/site_media/stijl.swf&amp;controlbar=over&amp;file=http://www-tc.pbs.org/wgbh/nova/secretlife/site_media/video/Katharine_Hayhoe_Science_512x288-H264-500.mp4&amp;image=http://www-tc.pbs.org/wgbh/nova/secretlife/site_media/video_stills/Katharine-video4still-mean.jpg&amp;"></param><embed src="http://www.pbs.org/wgbh/nova/secretlife/site_media/player.swf" width="512" height="288" allowscriptaccess="never" allowfullscreen="false" flashvars="bgcolor=#000000&amp;autostart=false&amp;showdigits=true&amp;showicons=false&amp;bufferlength=3&amp;fullscreen=true&amp;skin=http://www.pbs.org/wgbh/nova/secretlife/site_media/stijl.swf&amp;controlbar=over&amp;file=http://www-tc.pbs.org/wgbh/nova/secretlife/site_media/video/Katharine_Hayhoe_Science_512x288-H264-500.mp4&amp;image=http://www-tc.pbs.org/wgbh/nova/secretlife/site_media/video_stills/Katharine-video4still-mean.jpg&amp;"></embed></object></p>

<p>In the final segment of this three part video montage, Hayhoe addresses the question of what climate change means. Specifically, she is concerned about how global warming affects people on a personal level.  While global warming generally brings to mind melting ice caps and polar bears, its implications are far more widespread, affecting the lives of everyone around the world- from cotton farmers in Texas to public health workers in Chicago.  If nothing is done to change current emission levels, the number of days per year which exceed 100 degrees Fahrenheit, for example, will begin to increase dramatically, and if emissions are increased, many areas will even develop extreme conditions like those seen currently in Death Valley.  Hayhoe’s goal is to demonstrate clearly that the only way to preserve the world for future generations is to significantly reduce dependence on inefficient means of getting energy and instead transition to cleaner renewable energy sources.</p>

<p><strong>Editor's Note: These videos first appeared on the Nova program <a href="http://www.pbs.org/wgbh/nova/secretlife/scientists/katharine-hayhoe/" target="_blank">"The Secret Life of Scientists & Engineers"</a>.</strong></p>]]></content:encoded>
        <pubDate>Fri, 09 Nov 12 05:00:21 -0800</pubDate>
        <dc:creator>Katharine Hayhoe</dc:creator>
        <!--<dc:date>Nov 09, 2012 05:00</dc:date>-->
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        <title>Series: It&apos;s an Old World After All</title>
        <link>http://biologos.org/blog/series/its&#45;an&#45;old&#45;world&#45;after&#45;all?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/its&#45;an&#45;old&#45;world&#45;after&#45;all?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In our sixth BioLogos videocast, we take a look at the age of the Earth. We explain four methods scientists have used to determine that age: tree ring, lake varve, radiometric, and seafloor spread dating, and also offer some theological insight on how an old earth can fit with the first chapters of Genesis.</description>
        <content:encoded><![CDATA[<p>In our last Videocast, we explored some of the ways scientists have been able to determine the age of hominid fossils. Today, in our sixth BioLogos videocast, we extend the question to the age of the Earth. The first section, featured today, explains four methods scientists have used to determine that age: tree ring, lake varve, radiometric, and seafloor spread dating.</p>

<p>The script was written by biology student Joy Walters, with help from BioLogos president Darrel Falk.</p>
]]></content:encoded>
        <pubDate>Tue, 06 Nov 12 07:00:44 -0800</pubDate>
        <dc:creator>Joy Walters</dc:creator>
        <!--<dc:date>Nov 06, 2012 07:00</dc:date>-->
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        <title>Series: Behe, Lenski and the “Edge” of Evolution</title>
        <link>http://biologos.org/blog/series/behe&#45;lenski&#45;and&#45;the&#45;edge&#45;of&#45;evolution?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/behe&#45;lenski&#45;and&#45;the&#45;edge&#45;of&#45;evolution?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In this series, we reexamine the claim made by Intelligent Design proponent Michael Behe to have found a limit to “Darwinian” evolution in light of recent results from the laboratory of Richard Lenski.</description>
        <content:encoded><![CDATA[<h3>Revisiting the Long Term Evolution Experiment (LTEE)</h3>
<p>Readers may recall that in a previous series on how new biological information arises during evolution we discussed an ongoing experiment on the bacterium <em>E. coli</em> taking place in the laboratory of Richard Lenski. Named the Long Term Evolution Experiment, or LTEE, this research is very simple in its approach. As we described <a href="http://biologos.org/blog/evolution-and-the-origin-of-biological-information-part-2-e-coli-vs-id">previously</a>, the experiment merely allows twelve separate populations of E.coli to replicate in a controlled environment, and notes what changes appear over time:</p>

<blockquote>“The LTEE started in 1988 with twelve populations of the bacterium E. Coli all derived from one ancestral cell. The design of the experiment is straightforward: each day, each of the twelve cultures grow in 10ml of liquid medium with glucose as the limiting resource. In this medium, the bacteria compete to replicate for about seven generations and then stop dividing once the food runs out. After 24 hours, 1/10th of a ml of each culture is transferred to 9.9 ml of fresh food, and the cycle repeats itself. Every so often, the remaining 9.9 ml of leftover bacterial culture is frozen down to preserve a sample of the population at that point in time – with the proper treatment, bacteria can survive for decades in suspended animation.  Early in the experiment this was done every 100 generations, and later this was shifted to every 500 generations. A significant feature of the LTEE is that these frozen ancestors can be brought to life again for comparison with their evolved descendants: in essence, the freezers in the Lenski lab are a nearly perfect “living fossil record” of the experiment.”</blockquote>

<p>To date, the most dramatic change that has been noted is that some bacteria in one of the twelve cultures have acquired the ability to use citrate under aerobic conditions (i.e. when oxygen is present). While E. coli have the ability to import citrate and use it as a carbon source when oxygen is absent, they cannot do so when it is present. Since the LTEE takes place under aerobic conditions, this new ability, labeled “Cit+”, was very advantageous, since it allowed Cit+ bacteria to use a new food source in the culture medium that the rest of the culture could not. In very short order, the Cit+ bacteria nearly took over one of the twelve cultures. We have discussed this result as an evolutionary gain of information before, though the precise nature of the mutations that led to the Cit+ phenotype was not known at that time. </p>

<h3>Behe and the LTEE</h3>
<p>Lenski’s work on the LTEE has also been of significant interest to promoters of Intelligent Design, such as biochemist Michael Behe. Behe discusses the Lenski LTEE in his 2007 book, <em>The Edge of Evolution</em> at some length, and uses it as an example of, in his view, “what Darwinism can do” – i.e. slightly modify or destroy existing biological systems: </p>

<blockquote></p>“Even in a controlled lab culture where bacteria are warm and well fed, the bug that reproduces fastest or outcompetes the others will dominate the population. Like gravity, Darwinian evolution never stops.</p>

<p>But what does it yield? … By now over thirty thousand generations of E. coli, roughly the equivalent of a million years in the history of humans, have been born and died in Lenski’s lab. Over the whole course of the experiment, perhaps ten trillion, 10<sup>13</sup>, E coli have been produced. Although ten trillion seems like a lot (it’s probably more than the number of primates on the line from chimp to human), it’s virtually nothing compared to the number of malarial cells that have infested the earth. In the past fifty years there have been about a billion times as many of those as E. coli in the Michigan lab, which makes the study less valuable than our data on malaria. </p>

<p>Nonetheless, the data has pointed in the same general direction. The lab bacteria performed much like the wild pathogens: A (sic) host of incoherent changes have slightly altered pre-existing systems. Nothing fundamentally new has been produced. No new protein-protein interactions, no new molecular machines. As with thalassemia in humans, some large evolutionary advantages have been conferred by breaking things… The fact that malaria, with a billion fold more chances, gave a pattern very similar to the more modest studies on E. coli strongly suggests that that’s all Darwinism can do.” (pp 141-142)</p></blockquote>

<p>Behe, then, appears to see “Darwinism” as capable of “breaking things” to gain an evolutionary advantage, but unable to produce “fundamentally new” things. While <em>The Edge of Evolution</em> predates the report from the Lenski group (in 2008) describing the evolution of Cit+ <em>E. coli</em> in the LTEE, a paper published by Behe in 2010 does address this new development. However, as we have noted above, the precise nature of the mutations leading to Cit+ remained a mystery at the time. </p>

<p>In his 2010 paper, Behe reviews a large swath of experimental evolution studies, including the LTEE, with a view to placing the observed changes into one of three categories. These categories center around what Behe defines as a <strong>F</strong>unctional <strong>C</strong>oded elemen<strong>T</strong>, or “FCT”: </p>

<blockquote>An FCT is a discrete but not necessarily contiguous region of a gene that, by means of its nucleotide sequence, influences the production, processing, or biological activity of a particular nucleic acid or protein, or its specific binding to another molecule. Examples of FCTs are: promoters; enhancers; insulators; Shine-Dalgarno sequences; tRNA genes; miRNA genes; protein coding sequences; organellar targeting- or localization- signals;  intron/exon splice sites; codons specifying the binding site of a protein for another molecule (such as its substrate, another protein, or a small allosteric regulator); codons specifying a processing site of a protein (such as a cleavage, myristoylation, or phosphorylation site); polyadenylation signals; and transcription and translation termination signals. </blockquote>

<p>With this definition in hand, Behe then undertakes a large review of work in experimental evolution with bacteria and viruses. Understandably, loss-of-FCT mutations predominate, since mutations can easily break genes, and gene losses in some environments can be an advantage for the organism. Similarly, adaptive modification-of-FCT mutations are relatively common. Gain-of-FCT mutations, however, are rare. Once again Behe returns to the LTEE experiment as a prime example to consider: </p>

<blockquote>With a cumulative population size of  about 10<sup>14</sup> cells, Lenski’s investigation is large enough and long enough to give solid, reliable answers to many questions about evolution. </blockquote>

<p>After a thorough review of the results of the LTEE, however, it becomes clear that one of the “solid, reliable answers” that Behe has in mind is that Lenski’s work demonstrates the paucity of gain-of-FCT mutations, much like his critique of the LTEE in <em>Edge of Evolution</em>. Since the nature of the mutation that led to the ability to use citrate under aerobic conditions (Cit+) was at that time unknown, Behe speculates as to which category it will fall into, and discusses some possible underlying molecular mechanisms for the Cit+ mutation: </p>

<blockquote><p>“If the phenotype of the Lenski Cit+ strain is caused by the loss of the activity of a normal genetic regulatory element, such as a repressor binding site or other FCT, it will, of course, be a loss-of-FCT mutation, despite its highly adaptive effects in the presence of citrate. If the phenotype is due to one or more mutations that result in, for example, the addition of a novel genetic regulatory element, gene duplication with sequence divergence, or the gain of a new binding site, then it will be a noteworthy gain-of-FCT mutation.</p>

<p>The results of future work aside, so far, during the course of the longest, most open-ended, and most extensive laboratory investigation of bacterial evolution, a number of adaptive mutations have been identified that endow the bacterial strain with greater fitness compared to that of the ancestral strain in the particular growth medium. The goal of Lenski’s research was not to analyze adaptive mutations in terms of gain or loss of function, as is the focus here, but rather to address longstanding evolutionary questions. Nonetheless, all of the mutations identified to date can readily be classified as either modification-of-function or loss-of-FCT.”</p></blockquote>

<p>This point is a major one in Behe’s paper: the LTEE is the best experiment of its kind to date, and all there is to show for it are loss-of-FCT and modification-of-FCT mutations. Though Behe is blunt in <em>The Edge of Evolution</em>, and more subtle in the review, the same point is clear in both sources. According to Behe, we’ve been watching what evolution can do for quite a while, and what it can do amounts to “not much.”  </p>

<p>Fortunately for us, the Lenski lab kept watching, and working diligently to understand the changes that led to the Cit+ development. As we will examine tomorrow in Part 2 of this series, what they have discovered does not square easily with Behe’s ideas. Indeed, a careful analysis of their findings and Behe’s key arguments in <em>The Edge of Evolution</em> is in order, and that’s what we’ll do in tomorrow’s post.</p>

<h3>References cited: </h3>
<p>Michael J. Behe, <em>The Edge of Evolution: The Search for the Limits of Darwinism</em> (New York: Free Press, 2007).</p>

<p>Michael J. Behe (2010). Experimental evolution, loss-of-function mutations, and “The first rule of adaptive evolution”. <em>The Quarterly Review of Biology</em> 85(4); 419-445. </p>
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        <pubDate>Tue, 23 Oct 12 09:17:13 -0700</pubDate>
        <dc:creator>Dennis Venema</dc:creator>
        <!--<dc:date>Oct 23, 2012 09:17</dc:date>-->
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        <title>Oxygen and Co&#45;Creation</title>
        <link>http://biologos.org/blog/oxygen&#45;and&#45;co&#45;creation?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/oxygen&#45;and&#45;co&#45;creation?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In the mid&#45;seventeenth century, John Mayow conducted a series of experiments in which he showed that burning candles in bell jars consumed one&#45;fifth of the enclosed air before extinguishing. Remarkably, mice placed in bell jars did exactly the same thing...</description>
        <content:encoded><![CDATA[<p>In the mid-seventeenth century, John Mayow conducted a series of experiments in which he showed that burning candles in bell jars consumed one-fifth of the enclosed air before extinguishing. Remarkably, mice placed in bell jars did exactly the same thing (although the conclusions of these experiments were rather more terminal for the living subjects than for the candles). He concluded that a substance making up 20% of air was necessary for both combustion and respiration. More than a century later, Joseph Priestley showed that a mouse in a closed container would not die if a plant was included. Apparently plants were capable of restoring nitroaerus, which Priestley called &quot;dephlogisticated air,&quot; removed by animals.</p>
<p>In 1774, the French chemist Antoine Lavoisier replicated the relevant experiments in more controlled ways to demonstrate that mass was conserved during combustion. He also renamed the part of the air that burned 'oxyg&egrave;ne.' English scientists resisted the French scientist's new name, not least because the English Priestly had already published his discovery of the gas. 'Oxygen' nonetheless entered the common English vocabulary in part due to one of the first popular science books, <em>The Botanic Garden</em> (1791), which included a poem praising the gas using the preferred French name. By coincidence, this book also promoted some early ideas about biological evolution (specifically, it suggested that sexual reproduction might be important to evolution, which might help to explain the popularity of a book of poems about science). It was written by Erasmus Darwin, the grandfather of Charles Darwin, who first proposed the modern form of the theory of biological evolution in his 1859 book, <em>On the Origin of Species</em>.</p>
<p>150 years later, we are discovering that the lines connecting evolution and oxygen run deeper than the Darwin family tree. We now know, for instance, that for roughly half of the Earth's 4.6-billion-years of history, there was little to no oxygen in the atmosphere. Instead, oxygen entered the atmosphere in two major pulses, with one between 2.4 and 2.2 billion years ago, and another between 0.8 and 0.54 billion years ago. Recent evidence suggests that the first pulse may have actually been the largest event in a series of fits and starts beginning at around 2.7 billion years ago that finally produced a stable low oxygen atmosphere by around 1.8 billion years ago.</p>
<p>Remarkably, both episodes of atmospheric oxygenation happened just before explosions in biological diversity. We have spotty evidence of unicellular eukaryotes (cells with nuclei) before 2.4 billion years ago, but the first fossil evidence for large, diverse eukaryotic communities comes at 1.5 billion years ago. If you are a human, this is part of your history; humans are multicellular eukaryotes descended from one of these early unicellular pioneers. Multicellular animal life is an innovation that seems to have required more oxygen: animals don't appear in the fossil record until about 0.61 billion years ago, toward the end of the second pulse of oxygen.</p>
<p>It is, perhaps, not surprising that major evolutionary events in the eukaryotic family tree, including the origin and diversification of the animals, would be tied to or even driven by major changes in atmospheric oxygen abundance. Eukaryotes generally, and animals specifically, are oxygen lovers. As the subjects of Mayow and Priestly died to prove, we require oxygen for respiration. In general, the larger and more organizationally complex we are (for instance, a human versus a slime mold), the more oxygen we require.</p>
<p>But where did all the oxygen come from? Ultimately, it was produced by the bacterial equivalents of the plants in Joseph Priestley's experiment, a group of photosynthetic microbes called the cyanobacteria. These bacteria are the first and only organisms to have evolved the ability to produce oxygen by photosynthesis. In fact, plants are able to photosynthesize only because their cells harbor descendants of one of the early cyanobacteria. We call them chloroplasts and think of them as little cellular organs, but they are actually the great-great-great... granddaughters of a cyanobacterium that long ago gave up its independence in exchange for the stable environment inside a eukaryotic cell. In any case, photosynthesis is the only known geological process capable of producing oxygen at the rates required for the two pulses of atmospheric oxygenation. The first pulse was probably largely accomplished by cyanobacteria, while the second pulse was probably mostly associated with the cyanobacterial denizens of eukaryotic algae.</p>
<p>What is remarkable about all of this is the extent to which modern life and the atmosphere are products of each other's evolution. The tiniest of photosynthetic organisms played one of the most important roles in shaping the sky, and the sky helped to usher in the age of animals! As a Christian and a geobiologist, I do not believe that this relationship is anticipated or predicted by the Biblical creation accounts.</p>
<p>But then again, why should it have been? The original audience for these accounts would have found concepts like bacteria or even oxygen incomprehensible. The people for whom the Bible was originally addressed thought about origins primarily in terms of ongoing national conflicts and the current human condition. Faced with a variety of violent creation myths that reinforced national conflicts, Genesis said that the universe was created to be good, peaceful, and orderly by one god. It specifically listed things worshipped by other nations as creatures of that god, and in the climax of the creation account, Abraham was called by the same god to be a blessing to all the nations through Israel.</p>
<p>I am not claiming that the Bible cannot be read in a way that can shape us in real and meaningful ways today. In fact, for those who believe that the Bible is inspired, part of the meaning of inspiration has to be that the Bible is God's powerful word to both those with no concept of modern science (most of the world's population, both today and in the past) and to those deeply engaged in its practice. But, and this is a big but, we contemporary Americans read the Bible best when we are sensitive to the assumptions of the original audience, carefully observe how the Bible transformed those assumptions, and look for opportunities to do the same thing with our thinking.</p>
<p>I think that it is important for Christians to reflect on the view of origins that science has given us in light of the thinking evident in the Biblical creation accounts. We have to do this because science gives us a story that is inherently without philosophical or theological meaning; it is up to us to give it meaning by understanding it in relationship with our beliefs. For instance, some see the evolutionary history of life and the Earth and give that history meaning by elevating chance and necessity to the level of prime actors in their own modern creation account. This meaning is not inherent to the theory of evolution; it is supplied by an atheistic belief system external to the theory. I suggest that this view mistakes created things (chance and necessity) for the Creator.</p>
<p>Others have preferred to see the regularity of the universe as the action of an orderly God. This is an old approach to natural theology that was popular among many early scientists, and saw God as responsible for doing such things as maintaining the planets in consistent paths around the sun. Still others look for God in the unexplained. This is a newer approach that sees God as acting primarily in short bursts not explainable by the regular, orderly function of the universe. Looking for God in these ways is a little like trying to capture him in a bell jar, an approach that worked perfectly well with oxygen for Mayow, Priestley, and Lavoisier, but one that is unlikely to impress the Creator described in the Bible.</p>
<p>I prefer to see the same history in the light of a God who desires to share aspects of his nature with his creation, notably including his creativity. Just as he has made humans to be creators (with a little 'c'), he has given the rest of our world the gift of being instrumental in its own creation through the process of evolution. This surely must have been part of what God saw when he described his creation as good! It is my hope that the modern American church can learn to see the goodness of creation in things like the evolutionary history of life and the atmosphere, as well.</p>

<br><p class="intro">This post first appeared in October 2009</p>]]></content:encoded>
        <pubDate>Sat, 13 Oct 12 05:00:52 -0700</pubDate>
        <dc:creator>Mike Tice</dc:creator>
        <!--<dc:date>Oct 13, 2012 05:00</dc:date>-->
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        <title>Series: Decoding ENCODE</title>
        <link>http://biologos.org/blog/series/decoding&#45;encode&#45;series?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/decoding&#45;encode&#45;series?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>The BioLogos Foundation explains to the findings of the Encyclopedia of DNA Elements (ENCODE) project and responds to the claims that its discoveries challenge the theory of evolution, especially regarding so&#45;called &quot;junk DNA&quot;.</description>
        <content:encoded><![CDATA[<h3>Fuzzy, but useful</h3>
<p>One of the challenges for my students learning biology is summed up in one of my favorite sayings (that I’m sure some students are tired of hearing from me): “All the good concepts are fuzzy.” Take a basic concept like “living” versus “non-living,” for example. Obviously this is a fundamental concept for a biologist, since “biology” means the study of living things. Even here, though, we find that a precise definition of what is “alive” is a hard thing to nail down. While things like humans, dogs and cats obviously qualify (though some days with early lectures I might have my doubts for humans), there are other entities out there that blur the boundary between life and non-life. Viruses, for example, have many of the features of living things, but lack some others. <a href="http://biologos.org/blog/understanding-evolution-is-there-junk-in-your-genome-part-2">Transposons</a> are less life-like even than viruses, and there are even transposon-like entities that parasitize viruses.  Life and non-life are useful concepts, but the precise boundary between them is fuzzy. </p>

<h3>More technology = greater fuzz</h3>
<p>Often, an increase in technological ability exacerbates the “fuzziness” issue. One example in genetics (that we will later see to be highly relevant to understanding the results of ENCODE) is the concept of “dominant” versus “recessive” for different versions of a given gene. If you recall anything at all about genetics from high school, you might remember learning about Gregor Mendel crossing pea plants that differed in certain characteristics (purple versus white flowers, for example). Mendel deduced that the “particles” that controlled a certain trait (what we would later call “genes”) came in pairs, and that the presence of one type of particle (e.g. the one for purple flowers) could mask the presence of another (in this case the one for white flowers). He deduced that one gene version (what we now call an allele) was <em>dominant</em> over the other one, which in turn was <em>recessive</em>. For Mendel, one determined a dominant / recessive relationship by examining the appearance of a plant with both alleles: whichever allele determined the appearance was the dominant one. </p>

<p>Advances in technology would later do two things to Mendel’s model. First, they would provide deeper insights to what was actually going on at the biochemical level. Secondly, those deeper insights would cause the concept of “dominant” or “recessive” to become more fuzzy. I’ll illustrate what I mean with a (hypothetical, but representative) example. </p>

<p>When Mendel did his work he was limited to what he could observe with the naked eye. Now we have the ability to examine the effects of alleles at much deeper levels than Mendel could. Let’s say, for the sake of the discussion, that the gene Mendel was working with made an enzyme that produced purple pigment. The “purple” allele of the gene (let’s represent it with the symbol “P”) made a fully functioning enzyme: its DNA is copied into mRNA, and that mRNA is used to code for the protein enzyme that does the work of making pigment. The “white” allele (let’s call it “p”), on the other hand, turns out to have a mutation in the protein coding portion of the gene. This single mutation has two effects: it stops translation early, resulting in a protein that is too short and cannot work as an enzyme. The mutation also has an effect on the stability of the mRNA: the mRNA produced by the white allele degrades more readily, resulting in a lower steady-state amount of the mRNA in the cell. </p>

<p class="caption-center"><img src="http://biologos.org/uploads/static-content/pea_plants.jpg" alt="" height="244" width="570"  /></p>

<p>With this background in mind, suppose a scientist performs a series of different tests on a plant that has one purple allele and one white allele (i.e. is “Pp”): </p>

<blockquote>If the scientist looks at the flower color of the Pp plant, she would conclude (as did Mendel) that the p allele is recessive to the P allele, since the Pp plant is as purple as a plant with two purple alleles (PP). This arises because one P allele can produce enough enzyme for complete flower pigmentation.<br /><br />
If the scientist compares the amount of mRNA for this gene between PP, Pp and pp plants, she would notice three different outcomes. PP would have the most, Pp would have less, and pp would have the least. For this test the Pp plant is <em>intermediate</em> between the PP and pp plants. The scientist would conclude that neither the P nor p allele is completely dominant over / recessive to the other (an effect known as “incomplete dominance”).<br /><br />
If the scientist did a test to compare the physical size of the protein enzyme in PP, Pp and pp plants, she would again notice three outcomes. PP plants would have only full-sized enzymes, pp plants would have only small enzyme fragments, and Pp plants would have both distinct sizes, full-sized and small. In this case, the Pp plant shows <em>both</em> character traits (full-sized and small) <em>at the same time</em>. The scientist would conclude that the P and p alleles are <em>both</em> dominant, since both alleles display their version of the trait with neither masking the other in any way (an effect known as “co-dominance”.)</blockquote>

<p>So, is the P allele dominant, incompletely dominant, or co-dominant with respect to the p allele? The answer is “yes” – all three apply, <em>but it depends specifically on the details that the new technology is revealing</em>. Which answer is the most meaningful one? <em>Well, it depends on the specific question the researcher is asking</em>. Now that we have the ability to sequence DNA, we can directly observe the nature of all alleles in any given organism, and the presence of other alleles does not interfere with this observation. In effect, modern molecular biology has made all alleles “co-dominant” since all alleles display their “version of the trait” (i.e. their sequence) when they are sequenced. If one was so inclined, one could argue that “recessiveness” is an outdated concept, and that eventually we will determine through sequencing technology that all alleles are co-dominant. While this would be technically true, it would be very misleading. The p allele remains “recessive” in biologically meaningful ways: it is a loss of an enzyme function, and its complete loss has an effect on the appearance of the organism. Plants that have one of each allele (Pp) have the same enzyme content as PP plants. Anyone who would argue that “recessiveness” was no longer a feature of alleles in light of the new sequencing technology would have to address these issues in a meaningful way, since the evidence for “recessiveness” did not simply evaporate when we learned how to sequence genomes. By any measure, Mendel’s ideas of dominance and recessiveness are still useful concepts. </p>

<h3>The relevance to ENCODE</h3>
<p>So, how does this all relate to the <a href="/blog/decoding-encode">ENCODE project</a>? It hinges on another very useful, and therefore fuzzy term: “function.” Like “life” and “dominant”, “function” is a useful idea in biology, but much hinges on precisely how it is defined, and the technology used to assess its presence or absence.</p>
 
<p>The ENCODE definition of “function” is a useful one for the purposes of the large undertaking that this project represents. Specifically, ENCODE was seeking for <em>biochemical activity</em> in the genome: the interaction of chromatin proteins with DNA, regions of DNA that are made into RNA, and so on. This is all well and good, for we now have new tools available that allow us to test for these effects – we have new technology that can shed new insights on what is going on in the genome. </p>

<p>What these results don’t do, however, is cause the <a href="http://biologos.org/blog/series/understanding-evolution-is-there-junk-in-your-genome">prior lines of evidence relating to non-functional DNA</a> to suddenly disappear. As we saw with the dominance issue, the results from new techniques will need to be integrated into a more complete understanding of the data. We must also have a wider understanding of the strengths and weaknesses of various techniques to answer certain specific kinds of questions. </p>

<p>As a way to illustrate these issues for the ENCODE project, let’s consider the hypothetical example we used to explore the dominance issue. The ENCODE definition of “function” includes any detectable biological activity such as the presence of an mRNA transcript. In our example, both the “P” allele (that produces a working protein enzyme) and the “p” allele (which does not) both produce an mRNA transcript. <em>As such, the ENCODE project would indentify both alleles as equally functional</em>. In fact, the ENCODE definition of “detectable biological activity” as “function” would not be able to distinguish between these two alleles in any meaningful way, despite the fact that they have real, biological, and obviously functional differences. This is not to criticize the working definition of function adopted by ENCODE, but merely to demonstrate that this definition, while useful in some contexts, has limitations. </p>

<p>These limitations should stand as a caution to any group that wishes to adopt the ENCODE definition as the only viable definition of biological function.  To consider our example again, I suspect that many of those opposed to evolution would bristle at the suggestion that the p allele was equally functional to the P allele, given than it represents a clear loss of function in keeping with common Young Earth Creationist, Old Earth Creationist, and Intelligent Design definitions of loss-of-function alleles, and the propensity of these groups to insist that such mutations destroy functional information. Yet what we have seen from these groups, by and large, is a robust embrace of ENCODE and its view of function. I suspect that these groups, in their excitement over the media frenzy declaring the idea of “junk DNA” to be dead, have not yet had time to carefully think through the implications of that embrace. </p>

<p>In Part 2 of this series on Wednesday, we’ll explore other working definitions of “function,” look at other lines of evidence that are better suited to distinguishing between biologically functional and non-functional sequences, and revisit some examples from my previous series on <a href="http://biologos.org/blog/series/understanding-evolution-is-there-junk-in-your-genome">“junk DNA”</a> in light of ENCODE.</p> 
]]></content:encoded>
        <pubDate>Wed, 26 Sep 12 05:00:35 -0700</pubDate>
        <dc:creator>Dennis Venema, Stephen Mapes</dc:creator>
        <!--<dc:date>Sep 26, 2012 05:00</dc:date>-->
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        <title>Series: Recent Discoveries in Astronomy</title>
        <link>http://biologos.org/blog/series/recent&#45;discoveries&#45;in&#45;astronomy?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/recent&#45;discoveries&#45;in&#45;astronomy?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In this excerpt from the book Delight in Creation: Scientists Share Their Work with the Church, astronomer Deborah Haarsma shares her excitement about recent findings about our universe from a Christian perspective.</description>
        <content:encoded><![CDATA[<p>A passenger settles in beside me on the airplane. We chat a bit about our destinations, and then comes the inevitable question: “So, what do you do for a living?” I pause a moment before answering. If I answer “astronomy,” I know my fellow passenger will perk up, comment that he has always loved stars, and ask a question about a comet or planet that’s been in the news. If I answer “physics,” he will shrink back, comment that he didn’t do well in physics in high school, and the conversation will quickly come to an end. My professional colleagues have noticed the same thing. We joke that if you want to sleep on the plane, just answer, “Physics!”</p>

<p>It’s true that physics sounds scary to many people, and it can indeed be a difficult topic to learn. Yet I’ve always loved physics (my degrees are in physics rather than astronomy), because of the way that mathematical equations can describe and predict so much of what we see in the world around us. One reason I got into astrophysics is because the universe contains so many bizarre situations that we can’t reproduce on earth, like ultracold, or extremely high density, or extremely high magnetic fields. It’s a fun challenge to figure out which physical process will be the most important when the situation is so dissimilar to everyday experience. But if the word “physics” makes you shrink in distaste or fear, don’t worry. For the rest of this article, we’ll focus on a more friendly topic: astronomy.</p>

<p>In the last decade or two, our knowledge of the universe has grown dramatically as many new telescopes and spacecraft have come online. In this essay, I’ve selected some of my favorite recent astronomy photographs to share with you. As a professional astronomer and a Christian, I feel God has called me to share these wonders with the Church. Many times, these new discoveries are presented without any mention of God, and sometimes in a context of overt atheism. I want to share these things with you in a Christian context, with God as their creator.</p>

<h3>The Milky Way</h3>
<p>Have you ever seen the Milky Way? If you live in a rural area, you may have seen it many times. If not, it may have been a dramatic surprise when you first saw it while camping or traveling. On a clear night out in the country, the sky is strewn with brilliant stars—many more stars than you can see under city lights.The faintest stars form a creamy, smoky band from horizon to horizon. Our galaxy contains billions of stars, and thousands of those stars are visible to the naked eye. The stars appear in a band across the sky because we are viewing our galaxy edge-on, like looking at the edge of a dinner plate.</p>

<p>When David looked up at the night sky over Israel thousands of years ago, he may have seen the Milky Way, or a comet, or simply the brilliance of the full moon. Whatever the sky looked like that night, it inspired him to sing:</p>

<blockquote>The heavens declare the glory of God; the skies proclaim the work of his hands.
Day after day they pour forth speech; night after night they reveal knowledge.
They have no speech, they use no words; no sound is heard from them.
Yet their voice goes out into all the earth, their words to the ends of the world. (Ps. 19:1-4a)</blockquote>

<p>The heavens are displaying the glory of God for all people to hear, proclaiming their message to people of every language, tribe, and nation. Just about anyone who looks up at the night sky feels a sense of wonder. Yet as Christians, we feel more than a vague sense of awe; we know the Creator of the heavens personally, as our own loving Father.</p>

<p>The heavens declare more than God’s glory. The universe is God’s revelation of himself to us, and teaches us about his character. As the Belgic Confession says about “The Means by Which We Know God,”</p>

<blockquote>We know him by two means: First, by the creation, preservation, and government of the universe, since that universe is before our eyes like a beautiful book in which all creatures, great and small, are as letters to make us ponder the invisible things of God: his eternal power and his divinity, as the apostle Paul says in Romans 1:20. Second, he makes himself known to us more openly by his holy and divine Word, as much as we need in this life, for his glory and for the salvation of his own. (Article 2)</blockquote>

<p>The natural world teaches us about God’s glory, power, divinity, faithfulness, extravagance, immensity, love, and other attributes. God’s special revelation in scripture is our primary place to learn of God’s character (Ps. 19 goes on to talk about special revelation in vs. 7), but the natural world can bring the message to our senses in a powerful way beyond mere words on a page. The Holy Spirit can use the natural world to get the message past our hardened or weary hearts. Nature illustrates these attributes in ways that enlarge our imaginations to appreciate afresh the glory of God.</p>

<p class="caption-center"><img src="http://biologos.org/uploads/static-content/milkyway_570.jpg" alt="" height="850" width="570"  /></p>

<h3>The Sun</h3>
<p>The Solar Dynamics Observatory was launched into space in 2010, the latest of several spacecraft to photograph the sun in detail. In Figure 2, the upper photo shows the face of the sun with a sprinkling of sunspots. The sun is powered by nuclear fusion reactions deep in its core which heat the hydrogen and helium gas till it glows. A sunspot is a place on the sun’s surface where the gasses are a bit cooler than the surrounding area, so that it glows less brightly and appears dark.</p>

<p>The lower photo in Figure 2 was taken the same day, but in X-ray light. X-rays are invisible to our eyes, but you have experienced them at the dentist’s office. There, the X-rays are produced by a machine, travel through the mouth, and are detected by film to reveal an image of your teeth. In this image, X-rays are produced by the sun, travel to the Solar Dynamics Observatory, and are detected by a camera to show an image of the sun. In X-rays, the sunspots are the <em>brightest</em> part of the image, not the faintest. If you look at the sunspot on the left edge, you can see bands of particles rising out of the sunspot in a looping path above the sun’s surface and falling back down on it. As the particles follow lines of magnetic field, they emit X-rays. The loops you see are not small—they are about the size of planet Earth! Because of modern spacecraft, telescopes, and cameras, we can see so much more in the heavens than what is visible to the naked eye. Thus, we are seeing more of what the heavens have to declare about God. In Psalm 19, David goes on to describe the sun:</p>

<blockquote>In the heavens God has pitched a tent for the sun. It is like a bridegroom coming out of his chamber,
like a champion rejoicing to run his course. It rises at one end of the heavens
and makes its circuit to the other; nothing is deprived of its warmth. (vs. 4b-6)</blockquote>

<p>If David had lived today, maybe he would have written about other properties of the sun, like the power of God as seen in nuclear reactions and looping magnetic fields. As it is, he makes two important points. One is the universal warmth of the sun, by which God provides for all life on earth. The other is the faithful path of the sun, day after day, unchanging year after year. In the book of Jeremiah, God promises his people that he will not break his covenant with them, any more than he would break his covenant with day and night and the fixed laws of heaven and earth (33:19-26). The sun is a persistent reminder, woven into our lives, of God’s faithfulness to his promises.</p>

<p class="caption-center"><img src="http://biologos.org/uploads/static-content/sun_570.jpg" alt="" height="853" width="557"  /></p>
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        <pubDate>Fri, 21 Sep 12 04:00:01 -0700</pubDate>
        <dc:creator>Deborah Haarsma</dc:creator>
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        <title>Science, Christianity, and Homeschooling</title>
        <link>http://biologos.org/blog/science&#45;christianity&#45;and&#45;homeschooling?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/science&#45;christianity&#45;and&#45;homeschooling?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Resilient learners and a robust faith can handle challenges. But the faith of the students my professor described was different— strong, but brittle; it did not have the resilience that comes through testing.</description>
        <content:encoded><![CDATA[<p>Science and technology dominate the world of young people. Not only do teenagers seem to live their lives through their smart phones and Facebook pages, but our culture’s view of science has affected their understanding of truth. Often, “scientific truth” is more real to them than “religious truth”—and if the two should seem to conflict, more often than not, science wins. Perhaps turned off by the “conflict mentality” that they perceive in the church, and by the church's inability to relate Christianity to the world around them, many of those young people leave the faith. </p>


<p>Parents, youth leaders, teachers—all of us—need to encourage young people to have a passion for God’s world and God’s Word. We should help them learn to distinguish between primary issues of the faith, and secondary issues that Christians may in good conscience disagree on.  And we must equip them to think critically and biblically through the many different issues of science and faith so that they can be effective citizens and witnesses in today’s society.  Today I’d like to introduce a new resource for the Church in that equipping mission for today’s Christian young people; but first, let me give a bit of my own story.</p>

<h3>Prepared for the conflict</h3>


<p>My amazing parents homeschooled me through eighth grade. I loved the freedom to explore things that I enjoyed; the challenge of tackling subjects well beyond my “official” grade level; and the joy of forming deep relationships with my parents and brothers. We used many high-quality science texts, but in my memory, all of the resources on origins available to us promoted an often-combative Creation Science perspective. </p>

<p class="caption-left"><img src="http://biologos.org/uploads/static-content/a_mcfarthing_bio_new.jpg" alt="" height="270" width="200"  /></p>

<p>In ninth grade, I went to public high school armed and ready for the fight I had been trained to expect. When my biology teacher taught evolution and required us to write an essay, I hi-jacked the essay topic and turned it into an apologetic for six-day creation. Because I was in “conflict mode,” I was not ready to consider the arguments for evolution, or the possibility that Christians could actually accept it. I stayed on guard for the next three years until I headed off to the less hostile territory of Wheaton College.</p>

<p>As a student in Wheaton’s explicitly Christian environment, I felt a new safety to explore different biblically faithful positions that Christians hold, while at the same time maintaining my commitment to my faith. I majored in English and Secondary Education, and as one of my science requirements I took a class called “Issues in Biology.” My professor’s Christian faith shone through her teaching, and her words have stayed with me to this day: “Jesus is not going to be standing at the gateway of heaven,” she said, “holding a clipboard in his hand and asking, ‘Did you believe in six-day creation? Did you believe in evolution?’ He’s going to be asking the one question that matters: ‘Did you believe in ME?’” <em>Yes!</em> I thought. <em>I agree.</em> My professor then proceeded to surprise me: she was the first person to clearly articulate for me how someone could both believe the Bible and accept evolution. I realized that this— alongside many others—was a secondary issue, and that whatever my position on origins might be, I could have fellowship with Christians who held different positions.</p>

<p>But this particular biology professor had more to say than, “we can all just get along.” I remember her bemoaning a phenomenon that she had observed as a teacher: Christian students, raised in a strict Young Earth Creationist background which only portrayed the weaknesses in evolution, would often lose their faith when confronted with evolutionary theory in its full strength. Having only ever heard one perspective, they hadn’t learned to think critically through different viewpoints. Furthermore, they identified their faith so strongly with Young Earth Creationism, that when science seemed to contradict their understanding of origins, they felt they had to jettison not only their Creationism, but the whole of their Christian faith. </p>

<p>During my training as a high school teacher, I learned another way to understand what was happening in the minds (and lives) of these students using Piaget’s theory of cognitive equilibrium. In simplified form, the theory says that students have a mental construct of how they see the world (called a schema by Piaget); with this schema, they are happy and peaceful—in a state of equilibrium. When they encounter new information, however, they get pushed into an uncomfortable state of disequilibrium. In order to return to equilibrium, they must either assimilate the new information into their existing worldview, or they must accommodate their worldview to fit the new information.  Resilient learners and a robust faith can handle such challenges.</p>

<p>But the faith of the students my professor described was different— strong, but brittle; it did not have the resilience that comes through testing. Indeed, in 1644, John Milton described such untested conviction like this: “<em>I cannot praise a fugitive and cloistered virtue, unexercised and unbreathed, that never sallies out and sees her adversary, but slinks out of the race where that immortal garland is to be run for...</em>” (from <em>Areopagitica: A speech for the Liberty of Unlicensed Printing to the Parliament of England</em>). To use Piaget’s terms again, evolution threw these students into a disequilibrium from which they could not recover; they could not assimilate evolution into their Creationist worldview, and they could not or would not accommodate their worldview to fit the scientific evidence—so they floundered. </p>

<h3>Training for resilience</h3>
<p>In my own roles as a teacher and youth leader, I strive to introduce young people to new ideas that will stretch them—even cause them to lose their equilibrium at first.  Too much new information conflicting with students’ pre-existing ideas will mean that they cannot assimilate the new information or accommodate to it. Too little new information will mean that they are not being challenged. Both extremes mean that the student is not learning. What I aim to do is to push them into disequilibrium, but also then provide them with the tools to assimilate/accommodate for themselves, and reach equilibrium again—with a deeper, enriched, and more nuanced worldview.</p>

<p>While this has been my strategy to personally help train up resilient young Christians in classrooms and youth groups, last year, Dr. Ruth Bancewicz (the <em>Test of FAITH</em> Project Leader, contributor to this blog, and fellow member of City Church Cambridge) brought me on board to work on another exciting project.  Since then, I have been able to use my passion to provoke young people to think more deeply in my role as author of the <em>Test of FAITH</em> homeschool material. </p>

<p>As it was when I was a homeschooled student myself, the vast majority of homeschool science resources available today focus on the issue of origins, and from a Young Earth Creationist perspective. We have developed the <em>Test of FAITH</em> homeschool course to allow young people to learn about the different perspectives that Christians hold on a wide range of issues.  In fact, let me emphasize that less than one-third of this material is about origins! For my part, I have loved the opportunity to delve into other issues of science and faith while developing this course; we think students will also appreciate seeing how a biblical worldview engages with such diverse topics as cosmology, the environment, neurology and the soul, free will and determinism, and bioethics. </p>
 
<p>Both the broad range of issues addressed in the <em>Test of FAITH</em> curriculum and the approach this curriculum takes to those topics will benefit students in several specific ways:</p>

<ul><li>Learning about different viewpoints will encourage homeschoolers to think critically through ideas and their consequences.</li>
<li>Coming in contact with a variety of views will cause students to question why they believe what they believe, and will give them th tools to emerge from that questioning with an even deeper faith in God.</li>
<li>Showing that Christians can disagree on various secondary issues, yet still remain committed, Bible-based believers, will help diffuse the acrimony that often surrounds science-faith issues.</li></ul>

<p>I still have many questions, and I feel that my journey in understanding how science relates to my faith has just begun. However, <em>Test of FAITH</em> has been a significant marker on my own path, and I hope it will be a milestone for many homeschoolers around the globe, as well.</p>

<p class="intro"><em>Science and Christianity: An Introductory Course for Homeschoolers</em> is available for free download at <a href="http://www.testoffaith.com/homeschool">www.testoffaith.com/homeschool</a>. The 3-8 week course is designed for use with the award-winning documentary <em>Test of FAITH: Does science threaten belief in God?</em><br /><br />
Ten free <em>Test of FAITH</em> DVD’s are available to homeschooling Biologos supporters! Contact <a href="mailto:abigail@testoffaith.com">abigail@testoffaith.com</a> to reserve your copy.</p>]]></content:encoded>
        <pubDate>Tue, 18 Sep 12 05:00:48 -0700</pubDate>
        <dc:creator>Abigail McFarthing</dc:creator>
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        <title>Series: Biblical and Scientific Shortcomings of Flood Geology</title>
        <link>http://biologos.org/blog/series/biblical&#45;and&#45;scientific&#45;shortcomings&#45;of&#45;flood&#45;geology?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/biblical&#45;and&#45;scientific&#45;shortcomings&#45;of&#45;flood&#45;geology?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Gregg Davidson and Ken Wolgemuth seek to remove the stumbling block of the Genesis flood in this four part series. Though many believe in an ancient world&#45;wide flood, the evidence given does not hold up to geological scrutiny, but points rather to something regional instead. It is their hope that Christians will not walk away from faith in Christ simply because a global flood is not supported by science. Looking at natural phenomena like the Grand Canyon, salt beds, and fossil deposits, they reveal reasons for these deposits and structures while showing that their origin did not stem from a violent flood that covered the planet.</description>
        <content:encoded><![CDATA[<p class="intro">This is the first in a four part series taken from Gregg Davidson and Ken Wolgemuth's <a href="http://biologos.org/uploads/projects/davidson_wolgemuth_scholarly_essay.pdf" target="_blank">scholarly essay</a> "Christian Geologists on Noah’s Flood: Biblical and Scientific Shortcomings of Flood Geology".</p>

<p>As Christians and geologists, we frequently encounter people with stories of storm tossed and shipwrecked faith that started when they began to wrestle with apparent conflicts between science and the Bible.  The stories have a common thread. The Bible, they were told, clearly teaches the earth was created a few thousand years ago with life forms fashioned more or less as we find them today. Because the earth is very young, the incredibly complex sequence of rock, sediment, and fossils found on our planet must have been deposited in a very short period of time. Noah’s Flood, as the only plausible causal agent, was obviously a global and violent event.  Theories of an ancient earth and adaptation of life forms, they were further informed, have been constructed on flimsy evidence created by atheistic scientists searching for ways to expunge God from modern culture. But as these sojourners began to explore and understand the actual evidence for an ancient earth, they found themselves increasingly convinced of its legitimacy, and thereby increasingly questioning the veracity of their faith – many to the point of relegating Christ to just another wishful myth.</p>

<p>It is our conviction that these stories of strained or lost faith derive not from an inherent unwillingness to trust the Bible, but rather from misguided teaching on the message of Scripture. Those insisting the earth is young are not simply putting their faith in God’s Word, they are putting their faith in their own particular interpretation of that Word. As such, an entirely unnecessary stumbling block to faith is created, where faith in Christ first requires rejection of sound science.</p>

<p>As we have prayed and studied this subject, we have felt God’s call to speak out against this misplaced stumbling block. We are sensitive, however, to the fact that when scientists speak on issues of faith, there is a natural suspicion that science will be regarded as the ultimate arbiter of truth, and Scripture will have to yield whenever conflict arises. It is thus important for us to state here that both of us ascribe to the authority and inspiration of Scripture, the reality and necessity of Christ’s death and resurrection, the existence of genuine miraculous events, and the truthfulness of the Biblical historical narratives. In our understanding, science will never trump Scripture, but by virtue of science being a study of God’s natural creation, it may occasionally assist in our understanding of God’s written Word. Where this has occurred historically and has been accepted by the Church, the invariable result has been the abandonment of an interpretation of some secondary importance, without any change in our understanding of the intended central message.</p>

<p>This phenomenon is illustrated well by the 17th century clash between Galileo’s claims that the earth revolves around the sun, and the multiple passages in Scripture that appear to clearly present a static earth as the physical center of God’s natural creation. The Bible tells us repeatedly that the earth is fixed upon its foundations (Ps 93:1, 104:5) and the sun rises and sets (Eccl 1:5, Ps 19:6).  Within the context of the historical narratives (which we are not accustomed to interpreting in any figurative manner) we read statements about “the sun rising over the land” (Gen 19:23), and a miraculous event during a famous battle where “the sun stopped in the middle of the sky and delayed going down a full day” (Josh 10:13). Likewise in the Levitical law, we find commands to complete the Passover sacrifice “when the sun goes down” (Deut 16:6).</p>

<p>God’s people had interpreted these verses for thousands of years to be authoritative statements about both spiritual and physical realms, and 17th century believers understandably struggled with allowing science to alter traditional interpretations. If God says the sun rises and the sun sets, how could it be otherwise?</p>

<p>Fast forward a few centuries, and we are now somehow quite content to have allowed science to alter our thinking on these verses, without abandoning notions of inerrancy or inspiration. The reason is simply because it was eventually recognized that the primary message of these verses was never on the nature of nature, but on the nature of man and his experience with his environment and his God. Solomon and Joshua accurately recorded their experience from an earthly perspective (sun rising and setting), and David praised God for holding the earth fixedly in His hand (Ps 93:1, 104:5), without requiring a meaning of fixity in space. The central message of these verses was apparent to readers before and after Galileo. Only a secondary interpretation, likely never intended by the writers, was cast off after scientific advances.</p>

<p>So what is the issue regarding Noah’s Flood? The modern debate centers around two questions. Was it truly global in extent, and can the Flood account for the earth’s complex geologic record?  To address the first, it is worth being reminded of the Apostle Paul’s letter to the church in Rome where he makes a statement that “your faith is being proclaimed throughout the whole world” (Rom 1:8). Entire people groups existed at this time in China, Australia, and North and South America who knew nothing of the church in Rome. Though using wording that literally means the entire world population, Paul is clearly referring to the world known to him and his readers at the time.<sup>1</sup>  Paul speaks truthfully from his experience. Allowing for the possibility that Noah’s Flood encompassed all of known humanity without necessarily covering the entire planet is thus consistent with how other passages in Scripture are interpreted by Christians who believe the Bible is authoritative and trustworthy.</p>

<p>Our primary interest in this blog series is the second question, the widely promulgated notion that the Flood can account for the earth’s complex geology, and that all genuine Christians should accept this viewpoint.</p>

<h3>Notes</h3>
<p class="date">1. Many Biblical scholars define a <em>literal</em> interpretation as one that takes into account the literary genre, figures of speech, context, and author/audience perspective in deriving the intended meaning. By this definition, poetry and allegory are <em>literally</em> interpreted as <em>figurative</em>. In this blog and in our article, our use of <em>literal</em> conforms to its more common definition where a literal interpretation is one that adheres to the precise definition of words without figurative meaning and without requiring additional context to understand.</p>]]></content:encoded>
        <pubDate>Mon, 17 Sep 12 05:41:28 -0700</pubDate>
        <dc:creator>Gregg Davidson, Wolgemuth, Ken</dc:creator>
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        <title>Using Film to Catalyze Conversations on Faith and Science</title>
        <link>http://biologos.org/blog/using&#45;film&#45;to&#45;catalyze&#45;conversations&#45;on&#45;faith&#45;and&#45;science?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/using&#45;film&#45;to&#45;catalyze&#45;conversations&#45;on&#45;faith&#45;and&#45;science?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>What are the best ways to spark productive conversations about science and faith? Certainly there are books, articles, blogs (like this one), and podcasts. But there are particular advantages to using film.</description>
        <content:encoded><![CDATA[<p>Like many other Christians who are scientists, I hope for healthy and robust conversations about science and Christian faith. How can we inform and stimulate such conversations on campuses among students, faculty and staff, or at our churches? These are essentially cross-cultural interactions, and often do not come easily. Yet there is much to be gained by crossing the barriers erected at the science-faith interface. </p>

<p>What are the best ways to spark productive conversations about science and faith? Certainly there are books, articles, blogs (like this one), and podcasts. Or we can host major events with a prominent speaker or panel. These are all good things, to be sure. But there are particular advantages to using film. Unlike books, articles, blogs, or podcasts, videos engage with both sight and sound. A single DVD is much less expensive than a dozen copies of a book for a group to read through together. A film is portable, flexible, quick, and easy to use. Participants don't need to prepare between sessions, nor do they require internet access. And you don't need to find a big-name speaker or organize a large-scale event.</p>

<h3>Test of Faith</h3><br>

<p class="caption-center"><iframe width="560" height="315" src="http://www.youtube.com/embed/vO1wcYKe99Q" frameborder="0" allowfullscreen></iframe></p><br>

<p>Unlike years ago, there are now high-quality and stimulating science-faith documentaries that are well-suited for engaging groups and stimulating conversations. The Faraday Institute for Science and Religion, based in Cambridge, UK, has put together an award-winning documentary, <em><strong>Test of Faith: Does Science Threaten Belief in God?</strong></em> This 2009 film is divided into three distinct 30-minute sessions, which can be further divided if desired. A wide range of topics are considered, including the age and origin of the universe, the possibility of other universes, evolution, care for the environment, the brain, free will, and bioethics. The trailer can be seen above. This film is a good choice if you are not looking to focus primarily on issues around biological evolution. It is also particularly well-suited for groups that include both skeptics and Christians, as one could imagine it being shown on a public television station such as PBS or BBC. Faraday now has quite a range of supporting materials around the film, including bonus footage, a rich website, a leader’s guide, a study guide for participants, and a book with autobiographical contributions from scientist-believers, <em>Test of Faith: Spiritual Journeys with Scientists</em>. Contributors to the film and book include Francis Collins, Alister McGrath, Ard Louis, Jennifer Wiseman, Bill Newsome, John Polkinghorne, Alasdair Coles, Rosalind Picard, and John Bryant.</p>

<h3>From the Dust</h3><br>

<p class="caption-center"><iframe src="http://player.vimeo.com/video/23533521?title=0&amp;byline=0&amp;portrait=0" width="570" height="321" frameborder="0" webkitAllowFullScreen mozallowfullscreen allowFullScreen></iframe></p>

<p>Just this year, BioLogos partnered with Highway Media to produce a new documentary, <strong><em>From the Dust: Conversations in Creation</em></strong>. This film is just over an hour long, and is divided into four sections of similar length: “Faith and Science,” “Divinely Inspired,” “The Conversation,” and “Truly Human.” Some early clips from the film (prior to the final round of editing) and additional footage can be found in the <a href="http://biologos.org/resources/multimedia" (target="_blank") >multimedia resources</a> section of the BioLogos website, and the trailer is above. <em>From the Dust</em> has a firm focus on Genesis, creation, and evolution, probably the area of the most significant tension in our society today related to science and faith. Unlike <em>Test of Faith</em>, there is no narrative voice in From the Dust, and contrasting views are held in tension. It also focuses on theology more than science, so <em>From the Dust</em> may be a better choice than <em>Test of Faith</em> for some groups of Christians. While the <em>Test of Faith</em> film has a very modern and logical structure to it, <em>From the Dust</em> has more of a personal and emotional feel, and you feel that the people in the film are talking <em>with</em> you more than just talking <em>to</em> you. You see the cost that divisive positions on creation and evolution can have on Christians, even in the college classroom. While the film has a strong leaning towards evolutionary creationism and features N. T. Wright, John Walton, John Polkinghorne, Alister McGrath, Peter Enns, Jeff Schloss and Rick Colling, there are also significant contrasting voices from Answers in Genesis and Canopy Ministries. In my opinion, <em>From the Dust</em> is a good choice for many churches, small group Bible studies, or Christian student groups (e.g., InterVarsity, Navigators) to use. There are fewer supporting materials around <em>From the Dust</em>, due both to its new release and also its more inductive approach than that of the Faraday project. In addition to bonus footage, there is a <a href="http://fromthedustmovie.org/">website</a>, a list of sample discussion questions, and a <a href="http://biologos.org/uploads/static-content/From-the-Dust-Study-Guide.pdf" >group study guide</a> that I developed.</p>

<h3>Next Steps</h3>

<p>As you decide which film to use for starting conversations and how to use it, there are several things to consider. Will you show the whole film at once, or will you spread it out over several sessions? Will you provide additional structure or just have an open discussion after each viewing? How many days do you have available? How much time at each session? What are the worldviews of your audience? What is their level of biblical, theological, and scientific knowledge? How big is the group, and what is their age? What is their willingness to do homework and their level of interest in the topic? Is this a new group specifically convened to explore science and faith issues together, or is this a preexisting group that has been doing other things together and has varying levels of commitment to this new topic? What sort of expertise does the leader of the group have, or are there multiple leaders? All of these can affect the group dynamic and may influence the choices you make.</p>

<p>The groups I have worked with have been Christian students from secular colleges, Christian faculty and staff from secular colleges, a small group Bible study, and a general audience. I have found that <em>Test of Faith</em> worked well over three weeks with my Bible study group and with the faculty and staff group, though in these exclusively Christian groups I needed to add a bit of scripture, song or prayer in those settings (as is also recommended in the Faraday materials). The film was particularly good for a 30-minute screening at the general audience event, which also featured a panel for Q&A afterwards. It could likely be used in a college classroom, too, even at a secular institution. I had been considering strategies for using <em>Test of Faith</em> at my church as well, until I found <em>From the Dust</em>.</p>

<p>As I began thinking about ways to use <em>From the Dust</em> while it was still in the final editing stages, I screened it in two parts to three of the four audiences mentioned above (not the general audience). I asked several dozen undergraduates from local InterVarsity groups to give me their responses to the film and to tell me what questions it makes them want to explore more. I did the same with the Christian faculty and staff, and with my home Bible study group. Then I assembled a six-week curriculum (plus an opening session on setting expectations and sharing my vision), primarily aimed at Christian undergraduates. My students this summer loved it so much that we followed it with three-weeks on <em>Test of Faith</em>! Now I keep getting asked when I’ll do it next. But I am hoping that others, even my own students, will want to lead discussion groups like this. You don’t have to be an expert to start a conversation, and sometimes being a leader is the best way to learn.</p><br> </br>]]></content:encoded>
        <pubDate>Thu, 13 Sep 12 06:31:09 -0700</pubDate>
        <dc:creator>David Vosburg</dc:creator>
        <!--<dc:date>Sep 13, 2012 06:31</dc:date>-->
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        <title>Mending the Disconnect</title>
        <link>http://biologos.org/blog/mending&#45;the&#45;disconnect?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/mending&#45;the&#45;disconnect?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>How can it be that two things we love and treasure—two things that are absolutely central to ourselves and the lives we’ve built—seem so often to be at odds with each other?</description>
        <content:encoded><![CDATA[<p>How can it be that two things we love and treasure—two things that are absolutely central to ourselves and the lives we’ve built—seem so often to be at odds with each other?  While I could be talking about my two sons (the last weeks of summer “down-time” saw their share of brotherly bickering), here I mean my faith in Christ on one hand, and my respect for science on the other.  I am both a scientist and a committed Christian. I’ve spent years working in a lab, and years working with young kids in church settings.  I love both worlds, and both have been paramount in shaping me and my life. But recently I’ve found myself feeling at odds with one or the other, depending on the context. Why is this, and where does it leave me? It’s that odd feeling of “disconnect” between two profoundly important communities that I’d like to write about today.</p>

<h3>My walk in the scientific/evangelical world – Who am I?</h3>
     
<p>First, a little history.  While I was working towards my doctorate in Bioengineering at the University of Washington, my husband and I attended a Presbyterian church in Seattle.  Young and newly married, we chose to help in Sunday School, and found our niche teaching second graders there for almost 10 years.  During that time I was very involved in the scientific world and surrounded by a university community that had a real appreciation for science.  Wrapped up as I was in the lab, focusing on my dissertation, and living in a climate of serious inquiry and study, I was unaware of any significant disconnections between science and faith. Science was actively integrated with faith from the pulpit of our church, and in turn, we always loved to bring little bits of science into our lessons—even to the point of using sediment deposits in the Black Sea as evidence of a regionally-based ‘flood’ event thousands of years ago during our lessons about Noah’s ark.  No one complained.</p>

<p>As I loved research, I continued to work in a lab at UW once I finished my PhD. But I also had two babies while completing my dissertation, and eventually found it challenging to balance work and family.  When my husband was relocated to San Diego, I took that difficult uprooting as an opportunity to step back from labwork and spend more time with preschoolers.  Leaving life at a fast-paced urban research university for the relaxed and resort-like coastal suburbs of San Diego County was another kind of culture shock, compounded by the fact that we found looking for a new church to be particularly hard.   After some consultation with friends of friends, we stepped out of our Mainstream Protestant comfort zone and visited a Calvary Chapel.  </p>

<p>There was certainly an adjustment period (eventually we stopped doing a double-take every time we saw the board shorts and flip-flops on Sunday morning – even on the stage!), but over time we were able to plug into a dynamic evangelical community.  We found the vibrant, Christ-centered church to be a great place to make deep and lasting connections with the people, both through small groups and by serving in Children’s Ministry. Making a personally quite revolutionary decision to fully step away from the busy life of a researcher, I found a new calling when I took on a part time job leading the church’s 2nd and 3rd Grade program.</p>

<h3>A surprising disconnect in the faith community</h3>

<p>I now find myself spending my weekends with over a hundred kids and volunteers, and it has been a great adventure.  However, it has also been through this ministry that I discovered first hand the uncomfortable disconnect between science and the evangelical church.  At first it was just a few throw-away comments from fellow believers in church: dismissal of museum exhibits, eye-rolling at the ancient geology of the Grand Canyon, etc.   Of course, I had heard rumors of such thinking, but I was a little surprised to find it to be so common in the Evangelical community.  Many people I knew were rejecting large swathes of science outright.  Sometimes I give out prizes to the kids in my class—trinkets and other insignificant plastic things that kids love—and some of the items I had in our “prize box” were “dino eggs with dino facts.”  To my amazement, these items brought on complaints from parents because of their reference to the age of the dinosaurs some 65 million years ago.</p>

<p>Meanwhile, my husband—an environmental engineer with a background in Geology—was serving at the church with older kids.  In his class he often heard that favorite question from Christian kids, “How do the dinosaurs fit into the creation story?” But the only answer he’d ever heard in response was the explanation that dinosaurs were obviously on the ark, and somehow became extinct after the flood.  He is the most easy-going person ever, but he was taken aback by this wholesale dismissal of geologic history and by the lack of a more nuanced discussion of Scripture.  At that point we began to ask around, and learned that, yes, this is a common way of thinking in evangelical circles.</p>

<p>These attitudes about science and the Bible seemed especially prevalent among the many home schooling families in our community.  More than half of my church coworkers homeschool or send their kids to Christian schools.  Several of these wonderful folks were homeschooled themselves, and very few attended secular universities.   Many of the children and families that I minister to each week are also homeschooling families, and for the first time I became troubled by what they were learning about science and the natural world. I attended public school and secular universities both for undergraduate and graduate studies, and (after much thought and discussion) we chose to send our own kids to public schools, not least because  we want them to have great training in science and math.  While we are fortunate enough to live in a community with challenging public schools well equipped to prepare kids in those areas, I want the same for homeschooled kids, as well. All Christian young people should be able to both excel in science and grow in their understanding of the God of Scripture, whether they’re taught in institutional settings or at home.  I only wish I could better trust available homeschooling science curriculum materials to achieve that end.</p>

<h3>Is there cause for concern? Does it really matter?  </h3>

<p>One can correctly argue that Jesus’ incarnation and resurrection are the central beliefs and values of the Christian faith.   In the end, does it matter what we teach our kids about origins or the age of the Universe?   What harm is there in these black and white beliefs held by good people doing good things?</p>

<p>I believe that it does matter, for several reasons:</p>

<ol><li>We have generation of Christian young people who are not trained in scientific principles that will allow them to meaningfully contribute to fields such as cosmology, geology, biology, etc.  Our universities especially need an evangelical presence!</li>
<li>Thoughtful, scientifically-minded people—both young and old—will be pushed AWAY from the evangelical community.    I know that I could not attend a church that dismisses scientific evidence in order to fit nature’s narrative into preconceived ideas, or one where scientists are actively mocked. </li>
<li>The faith of homeschooled and other Christian kids can be challenged when they have their first college classes on geology, evolutionary biology, etc.  Many will reach a point where they think they have to choose between their faith and what the scientific world tells them about the created order.</li>
<li>Simply, evangelicals are in danger of looking a bit ridiculous to reasonable and educated people when they appear so fearful of science, making it easier for non-Christians to dismiss the gospel message.</li></ol>

<h3>Exploratory Efforts –Communicating God’s Revelation in Nature</h3>

<p>Despite these experiences and concerns, my overall impression of the evangelical community’s perspective on science is that in most areas, everything is fine. But it seems that sensitivity around a few points—particularly origins, the age of the earth and climate change—limits open discussion even of more general scientific issues, and as wonderful as they are, our pastoral staff rarely invokes natural wonders to illustrate doctrine, whether speaking to adults or kids.  </p>

<p>As a Christian, a scientist and an educator, I particularly want the kids I work with to know that it is good to wonder about the world around us and say “God Did It – But How?”  More than that, I want them to know that they do not have to be afraid of the answers to those questions.  So I ask myself, “Is there anything I can do?”  As it turns out, I’ve concluded that there <em>are</em> ways that I (like any of us) can help, even if the efforts are incrementally small at first.  Our church hosts a tremendous summer camp that teaches kids Bible stories and worship, but also gives children a chance to choose an “elective” and learn more about subjects like art, music, cooking, a sport, or science.   Each summer more than 1,000 kids attend this outreach at our church campus, and I was privileged this past summer to be able to “coach” science and write up a fun science curriculum that dovetailed with the various Bible stories the kids were hearing.   </p>

<p class="caption-left"><img src="http://biologos.org/uploads/static-content/Touryan-Whelan_music_box.jpg" alt="" height="348" width="220"  /></p>

<p>The practice of science became a wonderful avenue for sharing God’s love and the Salvation Story whether I pulled ideas for experiments directly from the Bible (such as creating, testing and optimizing sling shots like David) or used the stories more allegorically; extracting DNA from strawberries (always a hit with kids) illustrated our uniqueness in God’s eyes, while creating a solar music box demonstrated the beauty of living in God’s light vs. hiding in the darkness.  I found that this was an excellent place in which to bring young Christians (and non-Christians) into an understanding and appreciation of basic scientific principles in conjunction with communicating spiritual truth.  My hope is that those lessons will open their eyes to further inquiry as they grow up and move on through junior high, high school, and—for some—beyond. </p>

<p>In the end, I was inspired to write out a preliminary curriculum, combining scriptural lessons with science experiments. This effort led me to co-author <a href="http://www.amazon.com/gp/product/0983960232/ref=as_li_ss_tl?ie=UTF8&camp=1789&creative=390957&creativeASIN=0983960232&linkCode=as2&tag=thebiofou06-20">Wonders In Our World: Insights From God's Two Books</a><img src="http://www.assoc-amazon.com/e/ir?t=thebiofou06-20&l=as2&o=1&a=0983960232" width="1" height="1" border="0" alt="" style="border:none !important; margin:0px !important;" />, a book that further explains the complementarities of God’s Two Books – the book of nature and Scripture.  While materials like these can be used in church settings such as the summer camp at our Calvary Chapel, my hope is that they will become a resource for Christian families all year long—especially for those homeschoolers I love so much.  A full curriculum may still be a ways off (perhaps I’ll have more to share about that in a future post), but in the meantime, I’m honored to be able to draw on both Scripture and science to share my joy in Christ and his creation.</p>]]></content:encoded>
        <pubDate>Mon, 10 Sep 12 05:00:02 -0700</pubDate>
        <dc:creator>Lara Touryan-Whelan</dc:creator>
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        <title>Denisovans, Humans and the Chromosome 2 Fusion</title>
        <link>http://biologos.org/blog/denisovans&#45;humans&#45;and&#45;the&#45;chromosome&#45;2&#45;fusion?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/denisovans&#45;humans&#45;and&#45;the&#45;chromosome&#45;2&#45;fusion?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>The Denisovans, an extinct hominid group that interbred with modern humans, made the news again lately with the publication of a more detailed study of their genome. One of the many interesting findings was that the Denisovans share the same chromosome 2 fusion that modern humans have.</description>
        <content:encoded><![CDATA[<br> </br><p>The Denisovans, an extinct hominid group that interbred with modern humans, made the news again lately with the publication of a more detailed study of their genome. One of the many interesting findings was that the Denisovans share the same chromosome 2 fusion that modern humans have. In this post, I review what we know about the origins of human chromosome 2, and then discuss the new Denisovan findings and their implications. </p>

<h3>The origins of human chromosome 2: a brief review</h3>
<p>Though I have discussed the evidence for a fusion event leading to human chromosome 2 before, perhaps a brief review of the evidence is in order. The human genome is made up of 23 pairs of chromosomes (for a total of 46 chromosomes). This makes us something of an oddity among living great apes, all the rest of whom  have 24 pairs of chromosomes (for a total of 48). Given that there are many independent lines of evidence that support the conclusion that we share a common ancestor with other great apes, this poses something of a conundrum: how is it that our species arrived at this specific chromosome number? If we were to represent this “problem” on a phylogeny, or tree of relatedness, it would look something like this (not to scale):</p>

<p class="caption-center"><img src="http://biologos.org/uploads/static-content/denisovans_fig_1.jpg" alt="" height="357" width="434"  /></p>
 
<p>Our closest living relatives, chimpanzees and bonobos, both have 48 chromosomes, as do all other great apes such as gorillas and orangutans. This pattern has one of two explanations, one of which is much more likely than the other. Either the common ancestor to these species had 48 chromosomes, and there was an event that reduced that number to 46 specifically on the lineage leading to humans (option A), or the common ancestor species had 46 chromosomes, and there were independent, repeated events that increased chromosome number in all other great ape species (option B). We can compare these options by placing the required event(s) on the phylogeny (again, not to scale): </p>

<p class="caption-center"><img src="http://biologos.org/uploads/static-content/denisovans_fig_2.jpg" alt="" height="300" width="570"  /></p>
 
<p>It should be obvious that the option that requires the fewest events is the more likely one – in this case option A with an event that reduces chromosome number in the lineage leading to humans. The other option, that of repeated, independent events to increase chromosome number, remains a formal, but unlikely, possibility. Events that reduce chromosome number are not frequent occurrences, so Option A is more likely than Option B.</p>

<p>We can also find further support for Option A, because it predicts a specific type of event, namely one that reduces chromosome number. Since <em>loss</em> of a large amount of chromosomal material is almost always detrimental, we need an event that reduces chromosome number without losing information. One way for this to happen is for two chromosomes to fuse together and become one. Initially, this event would produce an individual with 47 chromosomes, where two different chromosomes get stuck together. Contrary to what is often assumed, this individual would be fertile and able to interbreed with the others in his or her population (who continue to have 48 chromosomes). In a small population, over time, two relatives who both have one copy of the fusion chromosome may mate and produce some progeny with two copies of the fused chromosome, or the first individuals with 46 chromosomes. Since either a 48-pair set or a 46-pair set is preferable for ease of cell division, this population will either eventually get rid of the fusion variant (the most likely outcome), or by chance will switch over completely to the “new” form, with everyone bearing 46 chromosome pairs. While not overly likely, this type of event is not especially rare in mammals, and we have observed this sort of thing happening within recorded human history in other species.  Some mammalian species even maintain distinct populations in the wild with differing chromosome numbers due to fusions, and these populations retain the ability to interbreed. </p>

<p>Further evidence for a fusion event in the lineage leading to modern humans comes from comparing <em>synteny</em>, or gene locations and orders on chromosomes within modern great apes – an issue we have discussed <a href="http://biologos.org/blog/signature-in-the-synteny">here</a> before.  In brief, what we see in human chromosome 2 is exactly what we would predict for a fusion event. When compared to other great apes, we see the genes on human chromosome 2 match up, in order, with two smaller ape chromosomes. We also see that sequences used at the tips of chromosomes are present at the proposed fusion site, and that human chromosome 2 has not one but two sites for the cell cytoskeleton to attach to for cell division – but that one of the sites is mutated and not functional, though it lines up precisely with the location of this site on the appropriate ape chromosome. Together, this evidence consistently supports both common ancestry for humans and great apes, and specifically that the difference we see in our chromosome numbers arose due to a single fusion event. I briefly discussed this evidence in my <a href="http://biologos.org/blog/the-sorrows-and-joys-of-teaching-evolution">last post</a> where I describe how I teach some of this material and the compelling impact it has on students exploring the evolution question for the first time. </p>

<h3>Enter the Denisovans</h3>
<p>With that as background, we are now prepared to appreciate a new finding that comes from genomics work done on the Denisovan hominids, an archaic species that is more closely related to Neanderthals than to us, but that nonetheless interbred with some anatomically modern humans as they migrated out of Africa and populated the globe. (For those not familiar with the Denisovans, or the evidence for our interbreeding with them, both Darrel Falk and I have written on this previously, <a href="http://biologos.org/blog/a-geneticists-journey">here</a> and <a href="http://biologos.org/blog/understanding-evolution-neanderthals-denisovans-and-human-speciation">here</a>). Recently, a more detailed understanding of the Denisovan genome <a href="http://www.nature.com/news/new-dna-analysis-shows-ancient-humans-interbred-with-denisovans-1.11331">was published</a>, and nested in the new information is the discovery that the Denisovans share the 46 chromosome set with the same fusion that <a href="http://johnhawks.net/weblog/reviews/denisova/denisova-chromosome-2-2012.html">we have</a>. This strongly supports the hypothesis that the fusion event predates the separation of our species. If we were to represent this on a phylogeny, we can now place this event with more accuracy than before (as before, the phylogeny is not to scale): </p>

<p class="caption-center"><img src="http://biologos.org/uploads/static-content/denisovans_fig_3.jpg" alt="" height="452" width="513"  /></p>
 
<p>Despite this new information, one obvious question remains. Did the Neanderthals also have the 46-pair set? From looking at the phylogeny above, we can see that the most likely answer is that they did, since the fact that the Denisovans had it strongly implies that the last common ancestor of humans and Neanderthals / Denisovans had it as well, and the Neanderthal-Denisovan split comes later. While the Denisovan DNA samples are of high enough quality to make this assessment, we do not yet have Neanderthal DNA of high enough quality to do the same analysis with current methods (though one additional feature of the new work on the Denisovan genome is developing more sensitive DNA sequencing techniques that may resolve this question in the future).</p>

<p>In other words, this fusion seems to be an ancient one, predating our species by several hundred thousand years. Present estimates of the last common ancestor between humans and Neanderthals / Denisovans  range at about 800,000 years ago.</p>

<h3>Implications for understanding our “becoming human”</h3>
<p>The main implication from this work is that it places the fusion event well before the advent of our species. I’ve often chatted informally with Christians about evolution, and at times some have thought that this fusion event was what “started” our species, or made our species unable to interbreed with other groups. Some have even suggested that perhaps the fusion event was what produced the first human (i.e. Adam). </p>

<p>Note that thinking this way suggests a misunderstanding of how chromosome fusions occur and what effect they have on their hosts. A fusion does not precipitate a speciation event, but rather the individual with the fusion remains a part of his or her population, and able to interbreed, even if with reduced fertility. Also, there is no necessary biological effect or change that the fusion produces on the appearance of the organism.  These misunderstandings aside, however,what this new evidence shows is that this fusion event took place long before modern humans arose at around 200,000 years ago. Indeed, the 800,000 years ago date for the last human - Denisovan common ancestor means that this is the most recent date possible for the fusion. While it is an interesting piece of our evolutionary history, it doesn’t seem to have much to do with how we came to acquire the traits that set us apart from, and ultimately outcompete, other similar species.</p> 
<br> </br>]]></content:encoded>
        <pubDate>Thu, 06 Sep 12 13:07:21 -0700</pubDate>
        <dc:creator>Dennis Venema</dc:creator>
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        <title>Series: Evolution and Personal Faith: How Christian University Students Resolve the Conflict</title>
        <link>http://biologos.org/blog/series/evolution&#45;and&#45;personal&#45;faith&#45;christian&#45;university&#45;students?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/evolution&#45;and&#45;personal&#45;faith&#45;christian&#45;university&#45;students?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>As students across the country begin their academic year, nearly all of them will receive some kind of science education, and many will experience tension between what they have been taught about God&apos;s creation in church or at home, and what they are likely to find in science textbooks and hear from their instructors.  How should that tension be addressed? How might it be resolved?  What resources does the Church have (and still need) to equip our young people to honor the truth God has revealed in both his Word and his world, and to share in the work of his Kingdom?  This series from Mark Winslow, Dean of the College of Natural, Social, and Health Sciences at Southern Nazarene University (SNU) in Bethany, OK, focuses on how Christian biology&#45;related majors at a mid&#45;Western Christian liberal arts university reconciled evolution and their personal religious beliefs.</description>
        <content:encoded><![CDATA[<p class="intro">As students across the country begin another academic year, nearly all of them will receive some kind of science education, and many will experience tension between what they have been taught about God's creation in church or at home, and what they are likely to find in science textbooks and hear from their instructors.  Part 1 of this series described the strong influence our study participants’ parents had in their children’s lives and belief in Young Earth Creationism. Today’s Part 2 explores the process through which participants negotiated their perceived conflict between evolution and personal faith, and the factors that contributed to their apprehension.</p>

<h3>The Crucible of Conflict </h3>

<p>When they entered the study site university as freshmen, many of the participants had no concept of Evolutionary Creationism and instead held to anti-evolution perspectives. Two notable exceptions are Diana and Tiffany. Diana’s father was a geologist and taught her from a young age to see evolution as valid and without contradiction to her Catholic faith. Tiffany was also unique in that she accepted non-human evolution while in high school when she discovered that evolution “didn’t necessarily mean that God didn’t create everything.” Still, Tiffany faced uncertainty about human evolution. Both Diana and Tiffany were surprised at how many of their fellow classmates in the Origins course struggled with evolution. Tiffany said, “I didn’t even realize that until I actually took that Origins course and there were kids in there . . . [where] the light bulbs were just coming on and I was like [? – quizzical, bewildered expression].”</p>

<p>Diana and Tiffany’s relative ease with evolution contrasted with most other participants who struggled to overcome their distrust of evolutionary ideas. The data indicate two primary sources of anxiety: participants’ apprehension about how they would defend an emerging acceptance of evolution to their parents; and participants’ awareness that the beliefs they once thought to be sacrosanct were beginning to change.</p>  

<h3>What Will My Parents Think?</h3>

<p>Participants who accepted evolution worried about how they would be viewed by their parents. Eight participants indicated that they had experienced conflict with their parents over evolution or were too worried to broach the issue with their parents. Megan still hadn’t discussed evolution with her parents in the year since she took Origins. She said, “I’m kinda . . . scared about talking to them [about evolution].”</p>

<p>In contrast to Megan, five participants broached the subject of evolution with their parents and recounted the heated arguments that ensued. The parents reportedly denied evolution as a valid theory and stated that it contradicted the Bible. For example, Rachel recalled tense exchanges with her father in which they would get into arguments and “become angry.” She cited his comments, “Why are you thinking this way? We sent you off to a Christian school [and] you are learning all this liberal garbage?” Furthermore, all five participants indicated their parents viewed a literal interpretation of Genesis as a necessary condition for salvation. Rachel remarked, “I have been taught my whole life you can’t be both [a Christian and an evolutionist], that’s just not how it works.”</p>

<p>The emotional stress that many of these participants experienced in forming increasingly independent views about evolution in direct opposition to their parents cannot be overstated. Gail felt so pressured on the matter that she formulated her scholarly paper as a letter to her father. The genuine emotion of her plea merits quoting at length below. The title of her paper in Origins was “Dear Dad…” and the following are excerpts:</p>

<blockquote>Dear Dad,<br>
I am writing to explain to you what I have learned in my origins class this spring. . . . You and mom have always had a strong belief that God created the earth in six twenty-four hour days as outlined in Genesis one; however, probably much to your horror, this class has challenged that belief. Please keep in mind that this class never once challenged the existence of God. . . . It set out to explain how God created the earth.</blockquote>

<p>Later in the paper, Gail implored her father, “Please do not question my walk with God.” She explained how theologians “consider Genesis one to be a Hebrew poem,” and that the “Bible was not written as a scientific journal.” Gail concluded her paper with,</p>

<blockquote>Dad, I know this letter is probably discouraging to you – maybe someday I will be convinced otherwise, but this seems very logical and practical to me. I pray that you will not condemn me in your disappointment, but understand that it is not a contingent factor in my salvation… I pray you have at least been open to this letter and accepting of my stance.<br>
Your Loving Daughter, Gail</blockquote>

<p>Asked why she wrote the paper to her father, Gail responded, “I was . . . just trying to convince him that . . . I hadn’t gone off the deep end, [that] I wasn’t crazy.” Gail considered the paper as “a little therapy session getting everything I wanted to say to my dad out on paper and it just almost felt like I was relieving a burden.” In the two years since she completed the paper and during the time of the study, Gail still hadn’t given it to her father.</p>

<h3>Changing Beliefs</h3>

<p>A second source of anxiety for participants was a developing awareness that some of their long-held beliefs were now beginning to change at the university.  Many participants did not realize that a Christian could accept evolution until they arrived at the study site university.</p>

<p>For some participants, it was a complete shock to see a professor present evolution in the Zoology classroom.  Stephanie described her evolution encounter in freshman Zoology as the “most upsetting time” in her college experience, and her “defining moment of . . . being challenged.” She recounted, “I was sitting there and she [the Zoology professor] started talking about it and I was just floored that she could believe in evolution. I was like, ‘You call yourself a Christian and you believe in evolution?!’ [her voice elevated and sounding incredulous]” Stephanie continued, “I remember walking out of that class so angry. I can still remember how angry I was.” Reflecting on her experience, Stephanie offered “disgusted” as a “good word” for how she felt.</p>

<p>Ashley said that learning about evolution “was a culmination of your thoughts for so many years being shattered and then you’re picking pieces here and there and adding your own.” She expressed a personal sense of shock in first learning that a Christian could accept evolution. A look of exasperation came over Ashley’s face when she reflected on that new realization her sophomore year when a guest lecturer spoke on campus about evolutionary creationism. With a laugh of incredulity, she said,</p>

<blockquote>Now do you see what I mean about being blindsided or bombarded with things that for 18 or 19 years you’ve held true? I mean, to me, it’s almost like for 23 years believing that my mom and my dad are my parents and then one day, them saying, ‘No, you’re adopted.’ That’s kinda like what it was to me. Just this truth for so long and then you’re just like, ‘What?!’ That’s how out of the blue it was to me.</blockquote>

<p>Stephanie’s and Ashley’s reactions of anger and shock were apparently provoked by a sudden, unacknowledged fear that a belief they had held so strongly for most of their life was suddenly overturned. As was true with many participants, Stephanie and Ashley realized for the first time that a Christian could accept evolution.</p>

<p>Many participants reported that the process of coming to an acceptance of evolution was journey-like and took several years. Some who learned about evolution in their freshman Zoology class didn’t resolve the issue in their minds until their junior or senior year. In many cases, the process was a slow accumulation of scientific evidence from various science courses. Many participants reported that Origins was a semester-long process of working through perceived conflicts. Ashley described her experience in the course: “There you were, a whole semester, just basically ripping your hair out about where you stand.” </p>

<p>Some participants mentioned they had “a-ha” moments along the journey. A few participants encountered a new perspective in a lecture or in a book, and their ideas about evolution and personal religious beliefs suddenly found greater clarity in the context of each other. However, these advances were steps along an extended journey. Many participants indicated that the process was a tug-of-war experience. They were pulled back and forth in deciding what scientific aspects to accept and how their religious beliefs would mesh with that new scientific acceptance. The comments of Ashley illustrate the struggle:</p>

<blockquote>I wanted to please both sides of myself. I wanted to please the science part of me but I also wanted to be true to the faith part of me and I wanted to get right in the middle and make sure both were alright and sometimes it’s not possible.</blockquote>

<p>Later in her interview, Ashley also remarked, “I felt like you’d get three steps ahead and you’d be ‘Alright’ and then five back! . . . And it was just a constant thought process . . . about where do I stand on this new issue.”</p>

<p>Jennifer joked about trying to find closure on human evolution saying, “When it [the Bible] says man was created instantaneously, one [evolution] says man was created over time, that was hard, but we eventually worked that one out.” Asked what she meant by “we,” Jennifer laughed and offered as an explanation, “Well me, myself, and I.” Her joke implies the internal, contentious, decision-making process to which many participants similarly alluded.  Throughout many participants’ recollections was an undercurrent of anxiety in becoming aware that some of their religious beliefs were changing for the first time.</p>

<p>In the midst of the struggles, four factors appeared to be constructive for these participants in their acceptance of evolution.  Next week, part 3 in this series focuses on those four factors.</p>]]></content:encoded>
        <pubDate>Tue, 28 Aug 12 05:37:57 -0700</pubDate>
        <dc:creator>Mark Winslow</dc:creator>
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        <title>Freedom and Grace in Tennessee</title>
        <link>http://biologos.org/blog/freedom&#45;and&#45;grace&#45;in&#45;tennessee?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/freedom&#45;and&#45;grace&#45;in&#45;tennessee?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Towards the end of the last school year, the Tennessee legislature passed the Teacher Protection Academic Freedom Act, a law that became more popularly known as the “Monkey Bill.”  I was doing research in a Tennessee high school biology classroom the morning that I learned that the bill had passed.</description>
        <content:encoded><![CDATA[<p>Towards the end of the last school year, the Tennessee legislature passed the <a href="http://biologos.org/uploads/projects/Tennessee_HB0368.pdf">Teacher Protection Academic Freedom Act</a>, a law that became more popularly known as the “Monkey Bill.”  I was doing research in a Tennessee high school biology classroom the morning that I learned that the bill had passed, and as the teacher informed her uninterested class about the details, she made the comment that we are "devolving" in the great state of Tennessee instead of "evolving." As a Christian, a biologist, and a soon-to-be educator, I was inclined to agree.</p>

<p>In Tennessee and across the country, many others weighed in on the subject over the next few weeks, including two essays (<a href="http://biologos.org/blog/teaching-science-in-tennessee">here</a> and <a href="http://biologos.org/blog/teaching-the-whole-controversy">here</a>) on the BioLogos Forum.  But soon after that, other issues crowded that story off the front page. Now, though, teachers and students across my state are returning to science classrooms, and we will all get to see what effect the law has in practice. Again speaking as a Christian, a biologist, and educator and drawing on all three of those perspectives, I’d like to offer my own reflections on the bill’s likely effect on Tennessee teachers and students, beginning with this excerpt from the bill itself: </p>

<blockquote> The teaching of some scientific subjects, including, but not limited to, biological evolution, the chemical origins of life, global warming, and human cloning, can cause controversy . . . The state board of education, public elementary and secondary school governing authorities, directors of schools, school system administrators, and public elementary and secondary school principals and administrators shall endeavor to assist teachers to find effective ways to present the science curriculum as it addresses scientific controversies.  (Tennessee HB368 / SB893)</blockquote>

<p>As an evangelical, I think this bill could be more detrimental than helpful to Christian teenagers’ faith. Many students who are particularly interested in the sciences and theory of evolution are already in the uncomfortable position of hearing pro-Intelligent Design doctrine from the pulpit on Sunday and then listening to their science teacher’s evolution instruction on Monday.  I was one of those students—sitting in more than one congregation under pastors who were particularly antagonistic to the theory of evolution, and who made not-so-subtle comments that it cannot co-exist with authentic Christian faith. Having a keen interest in the sciences and wanting to explore the data so widely accepted by the scientific community, I felt confused and ostracized in my church. I wondered if I would have to choose between my faith and intellectual integrity. The church family I trusted clashed with the science that I also trusted, causing a near catastrophe for my faith. I am thankful to the few people who offered me grace, allowing for my questioning of some of what I heard in church without labeling me a heretic. </p>

<p>Though the conservative Christian community may view this bill as a “win for the faith,” it is actually a loss if it reinforces the idea that this is simply an issue of science vs. scripture. Evolution is central to modern biology; trust in the authority of the Scriptures is central to Christian faith.  But this fight mentality between the two established communities is detrimental to our young teenagers who are seeking to grow in faith, but who cannot seem to reconcile scripture and scientific data.  We need them to seek after that reconciliation, not be told it can’t be done. Whatever they are hearing from the pulpit, the science classroom should be the one place that students can learn science. Students may well emerge with bitterness towards the church for dismissing the evidence of evolution not only so quickly, but in what is so often a haughty and condescending manner. Worse yet, students may emerge with bitterness that they were forced to choose between faith and intellectual integrity. Is this really an all or nothing argument? Are the two truly diametrically opposed?</p>

<p>In my world, these two have reconciled, and they now co-exist in peace. It has been a very long road to get there and I could not have done it without both access to good data and the freedom to explore it.  Having taught teenagers in an evangelical church for years and having observed in many biology classrooms as well, I know that many students are still struggling for this same reconciliation. That reconciliation is perhaps most easily attained when the seeking student is able investigate evolution in the science classroom without harassment from opposing religious forces. With this freedom, the student may very well realize that the fear that he/she may have regarding evolution is really just a fear of the unknown, and that it is possible to have intellectual integrity and to praise God for initiating and sustaining the evolutionary process.</p>

<p>In Tennessee’s science classrooms there are surely many teachers who begrudge being told that they <em>must</em> teach evolution, and who are relieved that they can now present it as a controversy and/or allow Intelligent Design as an alternative. They, too, will likely see this law as a “win.” But isn’t public science education is about giving students an accurate picture of the state of science, not about teachers’ philosophical opinions? As has been pointed out before, most Tennessee science teachers have not had the training to teach about religion or philosophy; they have been trained to teach about the basic principles of the biological world. </p>

<p>This bill may be particularly frustrating, then, to teachers who do simply want to teach science. From the many hours I’ve spent in secondary biology classrooms this year, I can say for sure that time is of the essence.  Tennessee teachers have barely enough instructional time to cover what students must know to pass the end-of-course biology test required for graduation; they do not have extra time to spend covering material that is not science. I have seen classroom arguments over evolution’s feasibility that ate away precious instruction time and only left a greater rift between the two camps and no doubt, a frustrated teacher. News of the Intelligent Design movement’s success in creating political and legal controversy is misplaced content in the secondary biology classroom. </p>

<p>Furthermore, as it allows teachers to frame biological evolution in terms of “controversy”— something that is a topic for debate—this law will likely not result in students who are more engaged in understanding science, but instead, only in more confusion (and possibly antagonism) in the classroom. Educators welcome debate in many cases because debate encourages critical thinking that leads to “formal thought,” the Holy Grail of Piaget’s Theory of Cognitive Development.  But the practice of science is about proposing hypotheses and testing the data, not primarily argumentation. And if the science community is not “debating” evolution, why should high school science students be debating evolution as part of their biology curriculum? </p>

<p>The bill is correct in stating that the purpose of science education is to “inform students about scientific evidence” and “help students develop critical thinking skills necessary to becoming intelligent, productive, and scientifically informed citizens.” I certainly agree, though I question whether it needed to be legislated.  Rather, my answer is: “Let’s actually do it!” Before bringing “debate” and “controversy” about scientific theories into the classroom, let’s instead teach our students about sound scientific practice; let’s give them opportunities to learn how to research and to employ the scientific method in everyday life. Let’s focus on teaching them about observing the indicators of climate change, the intricacies of DNA, conservation of ecosystems, and the principles of molecular and cell biology. Let’s give them the tools—specific to science— that help them think critically and work out problems, rather than undermining faith in those very practices and the community of people that uses them every day.  Let’s <em>not</em> teach them to live in denial of the ordinary dependability of science, let’s <em>not</em> teach them to distrust scientists who have no interest in “debate,” but want to understand the world God made.</p> 

<p>In Tennessee and elsewhere, let’s give both our students and those scientists the grace and support they need to merge authentic faith and intellectual integrity. </p>
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        <pubDate>Sun, 26 Aug 12 05:00:07 -0700</pubDate>
        <dc:creator>Katelin A. Fields</dc:creator>
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        <title>The Sorrows and Joys of Teaching Evolution at an Evangelical Christian University</title>
        <link>http://biologos.org/blog/the&#45;sorrows&#45;and&#45;joys&#45;of&#45;teaching&#45;evolution?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/the&#45;sorrows&#45;and&#45;joys&#45;of&#45;teaching&#45;evolution?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>As a biology professor, I have the profound privilege of teaching the principles of evolutionary biology to a variety of students. As one might expect, teaching this subject matter at times engenders controversy, crises of faith, anger and fear in students (and others).</description>
        <content:encoded><![CDATA[<p>As I settle into the lecture, only I really know what is coming a mere few PowerPoint slides hence. The class is an upper-level course in genetics, and the topic is changes in chromosome structure. Starting with fruit flies as an example, I sketch out comparisons between closely related species for which complete genome sequences are available. Students learn about the evidence for chromosome fusions and fissions, the reordering of genes along chromosomes in different lineages over time (an issue of <em>synteny</em> which we <a href="http://biologos.org/blog/signature-in-the-synteny">have discussed before</a>), and how these lines of evidence support the hypothesis that the various fruit fly species we observe in the modern day derive from common ancestral species in the past. Perhaps my using of the genuine estimates for speciation dates raises a few eyebrows, since “millions of years” is something of a byword for some antievolutionary groups, and fruit flies have been separating into new species for tens of millions of years. Still, it’s pretty clear that this isn’t really rocking anyone’s world: they’re all just fruit flies, after all, and I like to talk about them, since they’re the organism I do my research on. </p>

<p>After the “information dump” using the fruit fly examples, it’s time for a class discussion/application before the students drift off too much. Ok, here’s a slide that shows the chromosome structure of a group of organisms that other lines of evidence suggest are part of a group of related species. What do you observe? Do you think these species are related? If so, what explains the differences you observe?</p>

<p>What the students don’t know is that the slide shows human chromosomes, and those of our closest living relative, the chimpanzee. Oblivious to this knowledge, they easily arrive at the correct answer: yes, the evidence is strong that these are quite recently diverged species, and that a chromosome fusion or fission event explains the differences in chromosome structure between them. When I tell them that every other species in this grouping has the higher chromosome number/structure, they correctly deduce that the species with the lower chromosome number should show <a href="http://biologos.org/blog/signature-in-the-synteny">evidence of a fusion event</a> in the form of “telomere” sequences at the fusion point and an inactive “centromere” at the location suggested by comparison to the other, related genome. </p>

<p>Easy. </p>

<p>As I look around the room, I see the students are satisfied. I cover some difficult material in this course, and the students are obviously pleased that this topic is so easy to handle. The lines of evidence are easy to follow, and it’s easy to predict and test one’s hypotheses. 
Then, only after they’ve seen the evidence at least once without the baggage that will inevitably come, I ask them if they know what two species they’ve just compared. </p>

<p>As a biology professor at a primarily undergraduate, evangelical, liberal arts and sciences university, I have the profound privilege of teaching the principles of evolutionary biology to a variety of students, both biology majors and non-majors. As one might expect, teaching this subject matter at times engenders controversy, crises of faith, anger and fear in students (and others). These types of sorrows are relatively well known and have been discussed here on BioLogos by several authors. Yet there are also great joys associated with teaching evolutionary biology in a Christian setting, and in this post I reflect primarily on these as a counter-balance to the more frequent stories of conflict and struggle.</p> 

<h3>The sorrows … </h3>
<p>Lest anyone think that this post is an attempt to present an overly-optimistic or whitewashed view of teaching evolution in an evangelical setting, let me acknowledge and affirm that the pain that many (yes, most) evangelical students go through as they learn about  evolution is substantial and real.  I have had too many long conversations with students caught between their faith communities and the science to deny this reality. I have seen students struggle with their faith, close their minds to the scientific evidence, and even resolutely declare that no amount of evidence would ever be enough to convince them that evolution is real. I have seen anger, hurt and fear. I have seen students willing to discard the nearly the entirety of modern science in order to maintain a particular anti-evolutionary view. </p>

<p>For me personally, the most difficult circumstances to watch are students who feel torn between the evidence and their faith. In some cases these are extremely bright students, who easily see the strength of the evidence, but feel the need to remain unengaged and uncommitted because they fear a backlash from their churches, or (especially) their parents.  While an evangelical university can be a wonderful, safe environment for students to explore these issues, that environment doesn’t follow them home. These struggles are painful to watch, and I’ve spent more than a few hours in prayer for students facing them. </p>

<h3>… and the joys</h3>

<p>Yet for all these issues, I thoroughly enjoy teaching evolution at an evangelical university.  Of course I do not enjoy the anguish it can produce for some of my students – far from it! Fortunately, conflict and emotional turmoil are not the whole story, and many evangelical students report that learning about evolution was a valuable, enriching experience, regardless of their views after the fact. </p>

<p>One of the things I enjoy most is that teaching evolution is never dull in an evangelical setting. My students might snooze through a class on cellular respiration, or be tempted to surf Facebook when they should be applying their reasoning skills to problems in genetics, but whenever evolution is the topic I have everyone’s full attention. Whatever else, evolution <em>matters</em>. That intensity of student engagement is invigorating, and the students feel it too. Regardless of where students ultimately decide to “land” on the issue, many report that they enjoyed the process – the exchange of ideas, the discussions and debates, and the new understandings gained. </p>

<p>In addition to the electrifying interest the topic holds for evangelical students, learning about evolution is also by nature a multidisciplinary enterprise and opportunity for personal growth. Students are not merely gaining a larger perspective in biology, but fitting that new understanding into their knowledge of Scripture, church history, and their own faith journey. Often in class students will contribute what they have learned in other courses to the discussion: courses dealing with the setting and context of Genesis, courses on church history, and courses on hermeneutics and exegesis frequently are drawn upon. It is for this reason that I feel learning about evolution in a Christian liberal arts university is one of the very best places to do so, providing the institution treats the topics fairly. In this setting, resources are available for <em>all</em> of the questions that evolution engenders for Christians, not merely the scientific ones. Moreover, faculty are generally able to assist students with resources that address these extra-scientific issues, and provide a safe and non-judgmental environment for students to learn. The ability to learn what can be faith-shaking material in a setting surrounded by professors committed to the academic and spiritual growth of their students can make all the difference. To be sure, this environment can be one of personal turmoil for students, but with that turmoil comes a rare opportunity for intellectual and spiritual growth in a way that other areas of biology simply cannot provide. </p>

<p>Many of my students, regardless of whether they ultimately accept or reject the evidence for evolution, report that they have grown spiritually through their learning process. Contrary to popular opinion, in my experience most who do come to accept the evidence for evolution also report this growth. They feel closer to God, not further from Him. They feel that they have a deeper appreciation for, and understanding of, His creation. They feel that their faith is now more their own, rather than merely that of their parents. Most importantly, they feel <em>free</em>: that they need no longer be afraid of evolution, but celebrate it as the mechanism by which God has populated His world with “endless forms, most beautiful.” </p>

<p>Seeing students experience that freedom is something that one cannot test on an exam, nor encapsulate as a teaching outcome – but it is a deep joy of my teaching career. </p>
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        <pubDate>Fri, 24 Aug 12 06:06:54 -0700</pubDate>
        <dc:creator>Dennis Venema</dc:creator>
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        <title>Allaying Parental Fears About Evolution Education in Public Schools</title>
        <link>http://biologos.org/blog/allaying&#45;parental&#45;fears&#45;about&#45;evolution&#45;education&#45;in&#45;the&#45;public&#45;schools?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/allaying&#45;parental&#45;fears&#45;about&#45;evolution&#45;education&#45;in&#45;the&#45;public&#45;schools?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>If they left their children in the public classroom, should they as concerned parents, as committed Christians, as agents of truth and light in this dark world, remain quiet or should they speak out?</description>
        <content:encoded><![CDATA[<p>It was early spring and the weeds on the church grounds were taking full advantage of the moist soil and the warm sunlight. To keep the weeds at bay, a group of us had signed up for weed-duty and this happened to be our month in the rotation. There I was, down on my knees, grubbing around in the soil, careful to discriminate between the unwelcome intruders which we were trying to remove and the finely appointed plants which we were trying to preserve.</p>

<p>Jennifer, one of the church moms and a new friend, was on the beautification crew with me and my wife that day. Working side-by-side for a few hours provided us ample opportunity for conversation. She confided in me that she and her husband Michael were struggling with how best to respond to their children’s public school’s presentation of evolution. Years back these parents had had their own faith birthed and developed in a Christian tradition that sought to be faithful to Scripture, especially in those areas where biblical teaching seemed to run directly counter to popular American culture. Among their church’s counter-cultural distinctives was an affirmation of divine creation that stood in opposition to evolutionary science. The reasoning was simple and rested on two fundamentals: (1) The Bible taught that each kind of plant and animal was specially designed, and was independently brought into being directly by God himself and (2) the theory of evolution was scientifically untenable, crafted strategically by atheists to explain God away and undermine the moral fiber of our country. These tenets had been rehearsed many a time from their pulpit and reinforced by educational conferences led by Bible-believing credentialed scientists. Contradictory views were pronounced as suspect at best and destructive at worse.</p>
 
<p>But now Jennifer and Michael were coming to a crisis with their children’s public education. Next fall their oldest would be subject to the brain-washing pseudo-science of evolution, she explained. What were she and her husband to do? Though they had three choices at their disposal, only one was feasible. Because they themselves felt unqualified to assume the responsibility for a home education program, they couldn’t pull their kids out of the public school and start homeschooling. Because the costs of private Christian schooling far exceeded their limited budget, they couldn’t begin to entertain that option either. Their only choice was to leave their children in the public school and work diligently with them at home to correct the false teaching.</p>

<p>This “stay-in-school” option, however, confronted them with a moral dilemma. If they left their children in the public classroom, should they as concerned parents, as committed Christians, as agents of truth and light in this dark world, remain quiet or should they speak out? It was apparent that this impasse had her knotted up in emotional turmoil. Jennifer couldn’t focus on both the weeding and this part of the conversation at the same time. She stopped her work and set her troubled eyes on mine. The anguish in her voice was palpable. Was it right to stand by and let the system go unchallenged? Was it right to keep silent and let their kids, and their classmates, get fed an atheistic line? Would their failure to voice their objections to the school be a sign of cowardice, a lack of faith, a concession to the opposition?</p>

<p>On the other side of the equation was the potential this evolution conflict might have on the friendships they had built with the parents of her kids’ classmates, friendships that had been nurtured for years with peers who didn’t necessarily share these same beliefs about the Bible and the nature of evolution. To speak against the school’s science curriculum could put these valued friendships at risk. It was here her tone changed. Her anxiety over the conflict of creation versus evolution gave way to warmth and compassion as she related to me the depth of these relationships and the love they felt for their friends.</p>

<p>There seemed to be no easy solution. To speak for what they thought to be true would surely jeopardize their quest for solidarity and community with the other parents. To remain silent in the name of love would feel like a compromise of their convictions. Jennifer and Michael both felt pulled simultaneously in varied directions. When faced with this kind of decision, what did it mean to be a faithful disciple of Christ, to be a responsible parent, to be a good friend? It seemed like something valuable would have to give way.</p>

<p>Understandably, the weeding project had slowed considerably. But we had bigger issues at hand. After I identified with her plight and voiced my empathy, I took the liberty to introduce her to a complementarian perspective on creation and evolution that I felt would resolve their dilemma and allow them to stand by the truth of Scripture (slightly reconceived), to care for their children, to retain their friendships, and to continue to contribute to the welfare of the school. But because it was a viewpoint that neither she nor Michael had ever considered, I needed to go slowly and help her reframe both her understanding of the Bible’s teaching on creation and her perception of evolution.</p>

<p>I turned back to the weeds, and continued the conversation. Since my own path of discovery on this topic had a similar point of origin to that of Jennifer and Michael, I thought my story might throw some helpful light on their predicament. Over the next hour, Jennifer listened with great interest as I figuratively walked her along <a href="http://science.drvinson.net/my-journey" target="_blank">my own journey</a> from a church whose creed was ‘creation versus evolution’ to a broader community who celebrates ‘creation via evolution.’</p>

<p>By the time our work crew had finished beautifying the many flower beds populating the lower parking lot, Jennifer was more puzzled than when we began. But now her questions weren’t so much about what to do with the school situation as about how to get her brain and heart around this novel, but strangely attractive, approach to a subject she had long been taught was black and white, cut and dried, settled.</p>

<p>I knew that Jennifer would be eager for Michael to get caught up on the discussion we had while weeding. That next weekend the three of us met over coffee for a few hours, taking a fresh look at Scripture, science, faith and the church’s engagement with our culture. It was a thrilling discussion for all of us, moving this curious couple a few more steps along this new trajectory. They were eager to learn more, so I passed them what I think is the best intro-level book on this topic for Christians with their background: Darrel Falk’s <em><a href="/resources/books/coming-to-peace-with-science">Coming to Peace with Science: Bridging the Worlds Between Faith and Biology</a></em>. They both loved it and found that it helped answer many of their questions.</p>

<p>The next month Jennifer and Michael attended <a href="http://science.drvinson.net/presentation" target="_blank">a presentation</a> I give on this topic to interested groups in the area. The big-picture view helped set the debate in a much larger context and reminded them of the humble posture all Christians should adopt when discussing charged issues with fellow brothers and sisters in the faith. Jennifer found a few further <a href="http://science.drvinson.net/evolution-books" target="_blank">recommended readings</a> on our Web page to bring her high school biology education up-to-date.</p>

<p>For Jennifer and Michael their dilemma had been resolved; their fears had been allayed. They now feel good and at peace about keeping their children in the public school system, since the science curriculum is no longer viewed as a threat to their Christian faith. Their role as parents is no longer to oppose evolution but rather to set their children’s understanding of evolution in a larger theistic framework. Whether the family is reviewing the science material that the children are learning in school, or watching educational science shows on TV like NOVA, Nature, and National Geographic, they can marvel at the mechanisms of evolution and the complexity and the diversity of life that it brings forth, all as a wonderful outworking of how God creates life.</p>

<p>Much good came out of that morning working together in the flower beds. The weeds were all removed and the plants could get on with their growth, without having precious nutrients stolen away by competitive invaders. The same was true in some sense with Jennifer and Michael. With the weeds of the “creation <em>versus</em> evolution” conflict removed, they were free to direct their energies to the things that really mattered—loving God by constructively serving the people around them.</p>

<p class="intro">This post first appeared in May 2010</strong></p>
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        <pubDate>Tue, 21 Aug 12 04:59:12 -0700</pubDate>
        <dc:creator>David Vinson, MD</dc:creator>
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