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        <title>Custom Feed &#45; The BioLogos Forum</title>
    <link>http://biologos.org/resources/find/any/Non&#45;Believers,Young Earth Creationism,Genetics/sort&#45;by&#45;Newest?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
    <description>This is a custom feed of BioLogos resources. Make a new feed at http://biologos.org/resources/find</description>
    <dc:language>en</dc:language>
    <dc:rights>Copyright 2013</dc:rights>
    <dc:date>2013-05-20T23:11:48-08:00</dc:date>    
    
    

            
            
        
      <item>
        <title>Series: Evolution Basics</title>
        <link>http://biologos.org/blog/series/evolution&#45;basics?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/evolution&#45;basics?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Written by BioLogos Fellow of Biology Dennis Venema, this series of posts is intended as a basic introduction to the science of evolution for non&#45;specialists.</description>
        <content:encoded><![CDATA[<p>Regular readers of the BioLogos Forum will know that over the past few years I have written extensively on various evidences for evolution, often with a focus on genetics evidence. Other posts have focused on scientific arguments put forward from groups such as the Intelligent Design Movement (IDM), or the Old Earth Creationist organization <em>Reasons to Believe</em> (RTB), with a view to showing why I find those arguments unpersuasive. Often these articles are deeply technical—to the point where my friends (perhaps on Facebook, perhaps in a conversation over coffee in the church foyer on Sunday) would comment that, as interesting as it looked, it was just over their heads. Now, these friends are intelligent people, and some are even interested in evolution—but they’re not folks who read extensively on the topic. Nor do they follow the IDM or RTB—they’re just average folks who would like to learn more, but need to start at the beginning and work up slowly – not jump in halfway through, with technical terms and jargon flying around. They need a <em>context</em> for the discussion. They need to explore the basics, &nbsp;first, before building on that understanding to explore the finer details.</p>

<p>So, I’ve decided to try a slightly different approach for the next while—one that has these sorts of folks in mind. From time to time, you can still expect those more in-depth, technical articles, or perhaps a discussion of some new research that makes the popular press, or even an analysis of some new argument from the IDM or RTB. These will be breaks from the new routine, however. For the most part, we’re going to stick to the basics, much like you would if you took an introductory evolution course at a university. Don’t worry, though: this course doesn’t have any prerequisites! All that’s needed is a willingness to learn.</p>

<h3>What you can expect</h3>

<p>The goal of this course is straightforward: to provide evangelical Christians with a step-by-step introduction to the science of evolutionary biology.&nbsp; This will provide benefits beyond just the joy of learning more about God’s wonderful creation. An understanding of the basic science of evolution is of great benefit for reflecting on its theological implications, since this reflection can then be done from a scientifically-informed perspective. From time to time we might comment briefly on some issues of theological interest (and suggest resources for those looking to explore those issues further), but for the most part, we’re going to focus on the science. For folks interested in the interaction between science and Christianity, I heartily recommend <a href="http://biologos.org/blog/science-and-bible">Ted Davis’ recent series</a> as a fabulous introduction to the topic.</p>

<p>You can also expect a slow, patient pace. Since this course is intended for folks with little or no background in biology, we’re going to take our time to make sure no one gets left behind. This might be frustrating to folks who already know a fair bit about evolution. Hopefully even more knowledgeable readers will learn some new and interesting details along the way—but the goal will primarily be to help folks who are less well versed in evolution increase their understanding.</p>

<p>You can also expect a survey of many different areas that have some bearing on evolution. We’ll examine geology, paleontology, biogeography, genetics, and a host of other topics in order to provide a “big picture” overview. This broad-brush approach means that any given individual post will not necessarily be “convincing” to folks who have doubts about evolution. Think about assembling a large jigsaw puzzle: placing any individual piece, on its own, doesn’t convincingly demonstrate what the overall picture will show. This course will be like that. Each topic we cover will put a few pieces in place here and there, slowly building towards the final overall picture.</p>

<p>Since evolution is an active science, this process will also highlight where there are “missing pieces” that are still being sought by scientists. All of this is well and good, since the purpose of this course is not so much to <em>convince</em> anyone of the validity of evolutionary theory, but rather to <em>inform</em> readers about the nature and scope of evolution as a scientific theory in the present day. My goal is to provide readers with a basic understanding of what evolution is and how it works. Given that as the primary goal, if one finds the scope of the evidence ultimately convincing (or not) is somewhat beside the point. The intent here is to provide readers with information they can use to make their own, informed decision.</p>

<h3>How you can help</h3>

<p>First and foremost, you can help by spreading the word about this series to folks you think would be interested in learning more about evolution in a non-threatening environment. Secondly, you can help me by asking questions in the comments. One of the challenges of being a specialist is having the ability to put oneself in the shoes of someone just starting out. What might seem obvious to me may not seem obvious to you, and I hope you’ll feel that no question is too basic or too simplistic. If you’re wondering about something, it’s almost guaranteed that other folks are, too! So, please don’t be shy. I’ll do my best to answer questions in the comments, though I hope that some of our more skilled commenters will (respectfully!) help out here, as well. Finally, you can help by letting me know what broader areas of evolution you find confusing. I have my own ideas about what areas of evolution are commonly misunderstood, but I’d love to hear from readers about what areas they find difficult to understand. I’ll use this input to shape the topics I will cover as we go forward.</p>

<h3>Getting started</h3>

<p>In the next post in this course, we’ll dive into the course content by introducing two key areas: how scientific theories work in general, and how evolution in particular works as the current organizing theory of modern biology.&nbsp;</p>
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        <pubDate>Fri, 17 May 13 08:00:20 -0700</pubDate>
        <dc:creator>Dennis Venema</dc:creator>
        <!--<dc:date>May 17, 2013 08:00</dc:date>-->
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            <item>
        <title>Biological Evolution: What Makes it Good Science? Part 2</title>
        <link>http://biologos.org/blog/biological&#45;evolution&#45;what&#45;makes&#45;it&#45;good&#45;science&#45;part&#45;2?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/biological&#45;evolution&#45;what&#45;makes&#45;it&#45;good&#45;science&#45;part&#45;2?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>The Galápagos Islands were not a distinct “center of creation,” but a workshop for evolution in which an ancestral species made it to the yet uncolonized island and underwent a massive degree of speciation to adapt to the environment of the island. This is precisely what one would expect if the species of islands had arisen by evolution.</description>
        <content:encoded><![CDATA[<p>The second piece of evidence is found in living creatures, which are littered with the remnants of their ancestors’ ways of life.&nbsp; Bird and anteater embryos show tooth buds that are later absorbed and never erupt.&nbsp; Baleen whale embryos even develop teeth that are later resorbed.&nbsp; These are relics of their toothed ancestors.<sup>1</sup> Flightless kiwi birds have diminutive wings underneath their feathers, which testify to the ability of their ancestors to fly.&nbsp; Many cave-dwelling animals have rudimentary eyes that cannot see, even though eye development initiates in many of these species, but is later aborted.<sup>2</sup>&nbsp; The same can be said for the hind limbs of snakes, which form limb buds during embryonic development, but die off later.<sup>3</sup> All these are indications that they are descended from sighted and limbed ancestors, respectively.&nbsp;</p>

<p>Such remnants are also found in our genomes.&nbsp; Humans, unlike most mammals, cannot synthesize (make) our own vitamin C, but we carry the genes for synthesizing vitamin C.&nbsp; One of these genes encodes the GLO (L-gulonolactone oxidase) enzyme, and this gene in humans contains inactivating mutations and is therefore a “pseudogene.”&nbsp; This pseudogene and the genes that encode the enzymes of the vitamin C biosynthetic pathway are the remnants of our own evolutionary lineage from an ancestor that was able to synthesize its own vitamin C.<sup>4</sup> Furthermore, the GLO pseudogene is just one of a graveyard of inactivated genes, transposons, retroviruses and other non-functional sequences that litter our genome.&nbsp; While some of these sequences have been co-opted for particular functions, many of them have no known function.<sup>5</sup> We share many of these non-functional sequences with chimpanzees. &nbsp;The very presence of these genomic and anatomical flotsam and jetsam only makes sense if evolution has occurred.<sup>6</sup></p>

<p>A third piece of evidence for evolution comes from biogeography.<sup>7</sup> The flora and fauna of islands such as those of the Galápagos and Hawaii are radically unbalanced in that they lack many types of plants and animals but contain a profusion of clusters of similar species.&nbsp; Hawaii, for example, has no native mammals, reptiles, or amphibians, but a profusion of fruit flies and silversword plants.<sup>8</sup> One third of the 2,000 species of fruit flies are found on the Hawaiian Islands, which only covers 2 percent of the land on earth. &nbsp;These islands were never connected to the continents and arose as a result of volcanic activity and were, at least initially, completely uncolonized.&nbsp; The colonization of these islands occurred by means of occasional introduction of creatures from the mainland that then rapidly speciated on these islands to fill every available ecological niche.&nbsp; Thus, the organisms most closely related to island species come from the closest mainland areas, and often include those creatures most likely to find their way to islands, such as birds and flying insects.&nbsp;</p>

<p>The Galápagos Islands provide an excellent example of how biogeography provides evidence for evolution. The Galápagos have fourteen species of finch whose closest relative is probably the South American grassquit (<em>Tiaris</em>), yet only four of these finch species feed on seeds as finches normally do, while two others feed on cacti, seven eat insects, and another eats almost exclusively leaves.<sup>9</sup> Darwin, while visiting the Galápagos, still thought that species only varied within a particular kind (though he would not have used that terminology) but could adapt to various local environments and become particular subspecies. Therefore, he originally listed the warbler finch (<em>Certhidea olivacea</em>) as a wren and listed the small cactus finch (<em>Geospiza scandens</em>) as a member of the Icteridae or the family of meadowlarks and orioles.&nbsp; Only after Darwin had deposited his Galápagos specimens with the British ornithologist John Gould did Darwin discover (in a meeting with Gould that occurred during March, 1877), that his finch collection included thirteen or fourteen species of unusual finches that were all so closely related, Gould classified them in a single group all their own.&nbsp; This meeting showed Darwin that the immutable barrier between kinds of species did not exist.&nbsp; The Galápagos Islands were not a distinct “center of creation,” but a workshop for evolution in which an ancestral species made it to the yet uncolonized island and underwent a massive degree of speciation to adapt to the environment of the island.<sup>10</sup> This is precisely what one would expect if the species of islands had arisen by evolution.&nbsp;</p>

<p>A scientific theory also allows scientists to make predictions, and good theories provide accurate predictions.&nbsp; Can the theory of evolution allow accurate predictions?&nbsp; The answer, once again, is yes.&nbsp; Darwin himself predicted that the earth must be very old for evolution to occur.&nbsp; He did not know the age of the earth, but further research has shown that the earth is 4.55 billion years old, which is plenty of time for evolution to occur.&nbsp; Darwin also predicted that since plants on islands were most closely related to certain mainland plant species, the seeds of these plants should be able to withstand immersion in sea water for long periods of time, and again, Darwin was shown to be right.<sup>11</sup> Many decades after Darwin, we now know that variation in organisms is due to mutations in DNA and that these mutations are inherited, just as Darwin predicted.<sup>12</sup> Also, Darwin’s principle of natural selection predicts that particular sequences of DNA should behave in a manner that benefits only themselves and not their carriers, which modern research has thoroughly confirmed with the discovery of transposons and other types of “selfish DNA.”<sup>13</sup></p>

<p>Is evolutionary theory a good scientific theory?&nbsp; It has been repeatedly tested for over 150 years since its inception, and it has passed those tests successfully.&nbsp; The theory has been modified in response to new data, but the outlines of the theory have remained largely intact.&nbsp; It has existed at risk from new data.&nbsp; During the molecular biology revolution that began with the discovery of the structure of DNA by Franklin, Watson and Crick in 1953, the explosion of new data could have shown contemporary evolutionary theory to be wrong.&nbsp; However, some of the most powerful evidence for the theory of evolution has come from a field of science that did not even exist during Darwin’s time.&nbsp; The ability of a theory to withstand such intense scrutiny is a clear sign it is robust and enduring.&nbsp; As shown, the theory of evolution has predictive power, and it also integrates and makes sense of data from several fields of science, including ecology, paleontology, genetics, historical geology, paleoclimatology, and comparative anatomy and biochemistry.&nbsp; The highly integrative nature of evolutionary theory makes it a fine theory by any measure.&nbsp;</p>

<p>In conclusion, when measured against the standards of a good scientific theory, modern evolutionary biology clearly qualifies as good science.&nbsp; Ongoing debates within evolutionary biology exist about mechanism, rates, and causes, but not over whether evolution occurred.&nbsp; Such a question has been largely settled by the last 150 years’ worth of research.&nbsp; The future certainly looks bright for this field of science and I cannot imagine a more exciting topic to study.&nbsp;</p>

<h3>Notes</h3>

<p>1.&nbsp;Davit-Béal, Tiphaine,Abigail S. Tucker, and Jean-Yves Sire. “Loss of Teeth and Enamel in Tetrapods: Fossil Record, Genetic Data and Morphological Adaptations.” <em>Journal of Anatomy</em> 214, no. 4 (2009): 477–501.&nbsp;</p>

<p>2.&nbsp;Tian, Natasha M. M.-L., and David J. Price. “Why Cavefish are Blind.” <em>BioEssays</em> 27 (2005): 235–38; Yamamoto Y, Stock DW, and Jeffery WR (2004) Hedgehog Signalling Controls Eye Degeneration in Blind Cavefish. <em>Nature</em> 431:844–7; Jeffery, W. R. “Adaptive Evolution of Eye Degeneration in the Mexican Blind Cavefish.” <em>Journal of Heredity</em> 96, no. 3 (2005): 185–196.&nbsp;</p>

<p>3.&nbsp;Bejder, L., and B. K. Hall. “Limbs in Whales and Limblessness in Other Vertebrates: Mechanisms of Evolutionary and Developmental Transformation and Loss.” <em>Evolution and Development</em> 4, no. 6 (2002): 445–58.&nbsp;</p>

<p>4.&nbsp;Lachapelle, M. Y., and G. Drouin. “Inactivation Dates of the Human and Guinea Pig Vitamin C Genes.” <em>Genetica</em> 139, no. 2 (2011): 199–207.</p>

<p>5.&nbsp;Avise, John C. <em>Inside the Human Genome: A Case for Non-Intelligent Design</em>. New York: Oxford University Press, 2010.&nbsp;&nbsp; Romano, C. M., F. L. Melo, M. A. Corsini, E. C. Homes, and P. M. Zanotto.&nbsp; “Demographic Histories of ERV-K in Humans, Chimpanzees and Rhesus Monkeys.”<em> PLoS One</em> 2, no. 10 (2007): e1026. <a href="http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0001026">http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0001026</a>.&nbsp;</p>

<p>6.&nbsp;Max, “Plagiarized Errors and Molecular Genetics,” <a href="http://www.talkorigins.org/faqs/molgen">http://www.talkorigins.org/faqs/molgen</a>.</p>

<p>7.&nbsp;Coyne, Jerry A. “Intelligent Design: The Faith that Dare Not Peak Its Name.” In <em>Intelligent Thought: Science Versus the Intelligent Design Movement</em>, edited by John Brockman, 3–23. New York: Vintage, 2006.&nbsp;</p>

<p>8.&nbsp;Kricher, John. <em>Galápagos: A Natural History</em>. Princeton, NJ:&nbsp; Princeton University Press, 2006.&nbsp;</p>

<p>9.&nbsp;Grant, Peter R., and Rosemary B. Grant. <em>How and Why Species Multiply: The Radiation of Darwin’s Finches</em>. Princeton, NJ: Princeton University Press, 2011.&nbsp;</p>

<p>10.&nbsp;Sulloway, Frank J. “Why Darwin Rejected Intelligent Design.” In <em>Intelligent Thought: Science Versus the Intelligent Design Movement</em>, edited by John Brockman, 107–25. New York: Vintage, 2006.&nbsp;</p>

<p>11.&nbsp;Darwin, Charles.&nbsp;“On the action of sea-water on the germination of seeds.” <em>Journal of Proceedings of the Linnean Society of London</em> (Botany). 1 (1857): 130–140.</p>

<p>12.&nbsp;Futuyma, Douglas J. <em>Evolution</em>. 3rd ed. Sundbury, MA: Sinauer Associates, 2013.&nbsp;</p>

<p>13.&nbsp;Dawkins, Richard. <em>The Selfish Gene</em>. New York: Oxford University Press, 2006.</p>
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        <pubDate>Tue, 16 Apr 13 08:00:46 -0700</pubDate>
        <dc:creator>Michael Buratovich</dc:creator>
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        <title>Does Resurrection Contradict Science?</title>
        <link>http://biologos.org/blog/does&#45;resurrection&#45;contradict&#45;science?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/does&#45;resurrection&#45;contradict&#45;science?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>So what then does Resurrection mean? For Benedict it represents a new dimension of reality breaking through into human experience. It is not a violation of the old; it is the manifestation of something new.</description>
        <content:encoded><![CDATA[<p>The scientific case against resurrection is pretty straightforward: once dead you stay dead -- that's just the way it works. Coming back to life after having been dead (I mean <em>really</em> dead) would constitute a violation of natural law -- a miracle -- and miracles just don't happen. Fair enough. But in his recent book on the last days of Jesus (<em>Jesus of Nazareth Holy Week: From the Entrance Into Jerusalem to the Resurrection</em>), Joseph Ratzinger (aka Pope Benedict XVI) argues that reckoning Resurrection as resuscitation of a corpse is to misunderstand its true significance. Jesus' Resurrection, he contends, was an utterly singular event, straining the very limits of human understanding:</p>

<p>"Anyone approaching the Resurrection accounts in the belief that he knows what rising from the dead means will inevitably misunderstand those accounts and will then dismiss them as meaningless" (p. 243).</p>

<p>In fact, if Jesus' Resurrection were "merely" coming back to life in any way that we might comprehend, then it would be of little significance.</p>

<p>"Now it must be acknowledged that if in Jesus' Resurrection we were dealing simply with the miracle of a resuscitated corpse, it would ultimately be of no concern to us" (p. 243).</p>

<p>So what then does Resurrection mean? For Benedict it represents a new dimension of reality breaking through into human experience. It is not a violation of the old; it is the manifestation of something new.</p>

<p>"Jesus had not returned to a normal human life in this world like Lazarus and the others whom Jesus raised from the dead. He has entered upon a different life, a new life -- he has entered the vast breadth of God himself..." (p. 244).</p>

<p>Because it is something entirely new, it cannot represent a violation of natural law as understood by science.</p>

<p>"Naturally there can be no contradiction of clear scientific data. The Resurrection accounts certainly speak of something outside our world of experience. They speak of something new, something unprecedented -- a new dimension of reality that is revealed. What already exists is not called into question. Rather we are told that there is a further dimension, beyond what was previously known. Does that contradict science? Can there really only ever be what there has always been? Can there not be something unexpected, something unimaginable, something new? If there really is a God, is he not able to create a new dimension of human existence, a new dimension of reality altogether?" (p. 246-7)</p>

<p>Thus, in this view, Resurrection (as with all true miracles) is not contrary to science, but an indicator that science does not (yet?) describe the full expanse of reality. Indeed, some may argue that science itself contains similar "indicators." The 11 (or so) dimensional universe required by some versions of string theory, the multiverse theory of the universe where ours is but one of an infinite array of universes with variable physical laws, quantum entanglements, "spooky" action at a distance, the mysterious emergence of consciousness from inorganic matter -- all push the limits of human reason and imagination, suggesting to some that reality may be far more complex than the human mind can grasp.</p>

<p>For a moment, let us entertain the possibility that Resurrection is as Benedict interprets it: not a violation of natural law but an indicator of something beyond our scientific understanding of the universe. This has interesting implications for understanding how believers and skeptics approach the issue. If Resurrection does not violate science, then science does not necessarily constitute an impediment to accepting the reality of Resurrection. If the difference between the skeptic and believer is not science, then is it just a matter of imagination? The believer imagines greater possibilities for the universe than the non-believer. While this is possible, it seems questionable. To my knowledge, no research has found differences in imaginative abilities between religious and non-religious people. Moreover, contrarian examples easily come to mind: Isaac Asimov was an atheist but hardly lacking in imagination when it came to science fiction. I tend to think that both believers and non-believers can imagine (with varying degrees of effort, I'm sure) the new possibilities implied by Resurrection.</p>

<p>Thus, if it is neither imagination nor science that prompts skepticism about Resurrection, then what is left? I suggest that it comes down to a question of authority: At what point does one allow imaginative possibilities to have authority over how one lives? To the believer, Resurrection has an authority that science fiction does not. Resurrection is not thought-provoking entertainment. It requires far more than just imagining greater possibilities for the universe. It requires a change of life, here and now. Unlike the microscopic hidden dimensions of string theory, the new dimension implied by Resurrection has "broken though" into everyday reality and demands a response -- even if that response is to actively ignore it.</p>

<p>Now, what convinces the believer that Resurrection merits such authority when other imaginative possibilities such as extraterrestrial life or time-travel do not? The answer here appears to be historical commitment. There's no record of people committing themselves to the point of martyrdom to other imaginative possibilities as they have to Resurrection. The earliest example of such commitment being found, of course, in the dramatic post-crucifixion turn-around of the Apostles. Such an astounding change of heart, followed by an unwavering commitment capable of altering human history demands a categorically unique explanation: Resurrection.</p>

<p>The believer's argument, however, remains unconvincing to the skeptic. However impressive they might be, a change of heart and steadfast commitment do not necessarily add up to a new dimension of reality. Extraordinary claims require extraordinary evidence. Fair enough. So a key question regarding the interpretation of Resurrection is this: Is the post-crucifixion history of Christianity extraordinary? Does it compel the dispassionate observer to concede that a categorically unique event could plausibly be its best explanation?</p>

<p>It ought to be upon questions such as those above that skeptics and believers respectfully engage one another, rather than the simplistic and often acrimonious sloganeering that has increasingly become the norm.</p>
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        <pubDate>Fri, 29 Mar 13 12:58:35 -0700</pubDate>
        <dc:creator>Matt J. Rossano</dc:creator>
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        <title>Meet Jimmy Lin, “Medical and Scientific Doxologist”</title>
        <link>http://biologos.org/blog/meet&#45;jimmy&#45;lin&#45;medical&#45;and&#45;scientific&#45;doxologist?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/meet&#45;jimmy&#45;lin&#45;medical&#45;and&#45;scientific&#45;doxologist?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In our current culture, we’re defined by our jobs. It’s having a vocation. I wanted to shift away from that. I didn’t want to be a doctor first and foremost, or a scientist, but one who praises God.</description>
        <content:encoded><![CDATA[<p><strong>EMILY RUPPEL: You had a lot on your plate when you spoke with Michael Hickerson in 2012. What are you up to now?</strong></p>

<p><strong>JIMMY LIN</strong>: Currently I’m on faculty at Washington University at St. Louis, where I am a research instructor in the pathology department. Also, a year and a half ago, I founded the <a href="http://www.raregenomics.org/">Rare Genomics Institute</a> (RGI)—a nonprofit that helps find cures for people with rare diseases.</p>

<p><strong>ER: What qualifies as a “rare disease”?</strong></p>

<p><strong>JL:</strong> These are diseases like cystic fibrosis and Huntingdon’s disease—diseases that affect less than 200,000 Americans each year. There are over 7000 different rare diseases, and less than 5% of them have any therapy. Altogether, they affect about 25-30 million people.</p>

<p>This creates what we call a “long tail problem”—it’s hard for a top-down research system to create research programs for all 7000 rare diseases. So instead, we are creating a bottom-up platform from which the patients themselves can create research projects and help fund them. We connect patients with physicians and researchers, customize a research program with top medical universities, design the experiment, and then use an online fundraising platform to fund the study through [mostly] friends and family of the patient.</p>

<p>Basically, we create a “foundation in a box.” By partnering with the Rare Genomics Institute, patients and their friends and families who want to study rare diseases don’t have to go through the hoops of creating their own nonprofit or lab—we do that for them. So, instead of creating 7000 different nonprofits, we create a generalized platform from which studies can be conducted.</p>

<p><strong>ER: Who qualifies for care through the Rare Genomics Institute?</strong></p>

<p><strong>JL:</strong> Anyone with a rare disease can come to us. The main thing we’re doing right now is diagnosis. When families come to us, they either don’t know the disease that’s affecting them or their child, or they don’t know the gene that’s wrong.</p>

<p>For instance, if a child had a condition that doctors couldn’t identify, his or her parents might come to us for help. What we’d do then is sequence the genes of the mother, father, and child, and compare them to reference genome to determine what mutations each of the parents have. Depending on what the disease is and what the gene causing it is, we can filter out mutations that don’t mean anything using the parents’ genomes—then, after filtering, we can potentially pinpoint the genes that fit the genetic pattern of the disease. This is the first step.</p>

<p>After that, we are building infrastructure to determine the effect of these changes and a way to help. For example, after looking at the literature, we can perhaps design experiments using cells extracted from the patient; this part of the process is different for every disease. Then, if we can determine that there is, for instance, a pathway missing a specific enzyme, we can try using drugs, a bone marrow transplant, or gene therapy to try to put healthy cells into the child… But there’s a variety of diseases, of course, so there’s a variety of different approaches—and we’re just starting to explore these aspects.</p>

<p><strong>ER: How did RGI get started?</strong></p>

<p><strong>JL:</strong> It really started when I was in medical school at Johns Hopkins—there was this boy that came to our clinic to be seen. My research was in cancer genome sequencing, and the family had come to our department looking for answers about what was wrong with their son. At that point, the family was almost hopeless—they had gone to so many doctors, run so many tests—I decided I wanted to try to help children like this. That’s when my friends and I decided to start the Rare Genomics Institute.</p>

<p>Currently, there are about 50 researchers associated with the organization, and we are all volunteers. It’s growing much, much faster and been more amazing than we’ve ever imagined—we’re already making an impact. In May of last year, we were able to discover a new disease using the world’s first crowd-sourced, crowd-funded genome. Working with researchers at Yale, we delineated a disease of which our patient was the first identified.</p>

<p>Right now, we’re in the middle of raising funding and hiring staff to make this organization one that is self-sustaining, and to increase its impact even more.</p>

<h3>Excerpts from Michael Hickerson Interview</h3>

<p><strong>MH: …you call yourself a doxologist. What’s the full term you used in your Jubilee bio?</strong></p>

<p><strong>JL</strong>: Medical and scientific doxologist.</p>

<p><strong>MH: How did you decide on that term and what does it mean to you?</strong></p>

<p><strong>JL:</strong> I listen to a bunch of teaching by <a href="http://en.wikipedia.org/wiki/J._I._Packer">J.I. Packer</a>&nbsp;, who teaches theology at Regent College and is one of the leading thinkers on these things. Interestingly, before any one of his classes, he says “Theology is for doxology,” and then the whole class sings the Doxology together out loud in class. I thought, “Wow, that is so great,” because everybody sometimes learns theology just for intellectual things [instead of for worship].</p>

<p>That’s not just true for theology, it’s for everything: biology is for doxology; chemistry is for doxology. That’s when I started to think, I should consider myself, first and foremost, as a person who praises God in what I do. And then no longer make “Christian” the adjective, right? “Doxologist” is the noun. But then what kind of doxologist am I? So I call myself a medical and scientist doxologist. I would call someone, for example, in the marketplace, a business doxologist. Or, someone who does art, an artistic doxologist. To really have the noun as our identity, and then our vocation as just a descriptor of how we do that.</p>

<p><strong>MH: That’s a great point. A noun is always stronger than the adjective. So, you want that to be the focus, rather than the add-on.</strong></p>

<p><strong>JL:</strong> In our current culture, we’re defined by our jobs. It’s <em>having</em> a vocation. I wanted to shift away from that. I didn’t want to be a doctor first and foremost, or a scientist, but one who praises God. And evidently, within science you don’t want to call yourself a Christian Scientist. That’s another religion, so . . .</p>

<p><strong>MH: [laughs] That’s right. I run into that, as well, when I’m teaching or talking about science to Christians. You always run into that stumbling block.</strong></p>

<p><strong>JL: </strong>With “scientific doxologist,” people don’t confuse them. You do have to explain what it means. And that gets in a little story actually, on what it means about vocation. It’s a small lesson — a teaching point when you do talk to people about vocation and calling. That’s why I use it.</p>

<p><strong>MH: I guess my final question would be what spiritual practices help sustain you? What helps you stay in contact with God and keep a good foundation?</strong></p>

<p><strong>JL:</strong> First, I am interested in many, many different things. I sort of mix it up in terms of spiritual practices. Besides the fundamentals, of course, of quiet time, devotional reading, and scriptural reading, I do theological study because I have to do that academically. I find a lot of time with God through the spiritual disciplines, such as times of solitude — which is very interesting for someone who is in academics to no longer think about ideas but just to be quiet before God — how silence, time to think by yourself, or sitting in silence is also something you should foster.</p>

<p>In terms of spiritual formation, what you really need is definitely a good community of people. I have a very supportive community at my church. I’m the deacon of devotions, so that of course keeps me on track. It encourages me as I, in my own spiritual walk, encourage other people. Fundamentally, I think for all Christians, whether you are academic or no matter your vocation or calling, being in the Word and prayer are the most important things. Doing that and being spiritually fed is what is important.</p>
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        <pubDate>Mon, 25 Mar 13 08:33:45 -0700</pubDate>
        <dc:creator>Jimmy Lin, Ruppel, Emily</dc:creator>
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        <title>Genes, Cells, and the Changing Face of Technology, Part 1</title>
        <link>http://biologos.org/blog/genes&#45;bacteria&#45;and&#45;the&#45;changing&#45;face&#45;of&#45;technology&#45;part&#45;1?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/genes&#45;bacteria&#45;and&#45;the&#45;changing&#45;face&#45;of&#45;technology&#45;part&#45;1?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Right on this tabletop, you could make materials that by current manufacturing processes would otherwise cause a great amount of environmental hazard … In 50 years, we should be able to do things in ways we don’t do them now, that will be cheaper, less toxic, less polluting, more efficient, and so forth…</description>
        <content:encoded><![CDATA[<p><strong>EMILY RUPPEL: You’ve said that as technology in the 20th century was influenced by chemistry and physics, in the 21st century, it’s going to be influenced by biology. Can you give us a sense of what that future might look like?</strong></p>

<p><strong>DOUG LAUFFENBURGER</strong>: It could look like a lot of things. One way to envision what I mean is to put yourself back a hundred years. For instance, in 1913, an electronic computer was unimaginable. But using physics, quantum physics, leading to semiconductors and devices like that, people figured out over the next 20 to 30 years how you could build a machine to do calculations and so forth. And then, of course, all sorts of thing happened…</p>

<p>We’re roughly at that stage with biology, even though it seems like things are more imaginable because—and we don’t have to go strictly century by century here—because we can already guess the way some things might change, whereas in 1913 there was no inkling, really, as to what would happen in the computer revolution.</p>

<p>So, to enumerate some of the things that are conceivable—let’s just start with computers, because we were just there.</p>

<p>There’s a notion that computers get faster and cheaper by making their logic gates smaller, and how you improve a design with physics keeps bumping up against how you make these little units smaller. Well, using biology, the solution seems self-evident—you just line up the pieces of DNA, and if you put the right pieces of DNA in the right places, the resulting parts are so much smaller than the things we can do with physics. You can imagine, even though it’s just a theory now, computers continuing to become many times smaller and cheaper—and be made via environmentally benign manufacturing processes—through biomolecular construction.</p>

<p>Now that’s exciting from one point of view, but from another, it’s not that revolutionary, because you’re just using DNA as a piece of physics. It’s not really biology—it’s merely a biological molecule being used to make better physics.</p>

<p>For a different example, if you think about the way we make things, the way we manufacture plastics, gasoline, energy—we have to do all that using chemistry, and to make that chemistry happen, we have to input a lot of energy—in fact, one of the most costly industries in terms of energy usage <em>is</em> the energy industry. You have to put in so much energy to refine petroleum and things like that. And to make plastics, ceramics—things of that nature—is also very energy intensive, and it’s also where a lot of pollution comes from, because you’re mixing together all these chemicals that really didn’t want to be mixed together. You get what you want, but you get a lot of byproducts, toxins, etc.</p>

<p>Well, people have started to realize that a lot of this work can be redone through the use of biology. You can turn corn into fuel or plastic, and you can make magnetic or electrical storage devices out of biological units (viruses can pattern the crystals, so instead of using mixtures of toxic chemicals, you just pull the viruses with the right properties together). Right on this tabletop, you could make materials that by current manufacturing processes would otherwise cause a great amount of environmental hazard.</p>

<p>As for another exciting development—well, to preface, one of the problematic things about modern agriculture is the necessity of using fertilizers (there are insecticides to be concerned about, too), but fertilizer manufacturing is terrible for the environment. You have to make fertilizer out of ammonia and that’s a horribly polluting and energy-intensive manufacturing process. What you could potentially do, instead, is program into bacteria the genes that take nitrogen out of air, turning it into organic nitrogen then just scatter the bacteria onto the field—and you wouldn’t need to <em>make</em> ammonium using the current very caustic processes.</p>

<p>These are the sorts of things I mean—and we haven’t even touched on medicine, yet. People tend to think about medicinal advances, first, but before you even get to medicine, you can think about energy, manufacturing, materials, and agriculture. In 50 years, we should be able to do things in ways we don’t do them now, that will be cheaper, less toxic, less polluting, more efficient, and so forth.</p>

<p><strong>ER: A lot of people are nervous about the idea of “programming” life. Can you respond to this fear as a Christian?</strong></p>

<p><strong>DL</strong>: As a Christian, I would say that God gave humankind dominion over the earth, to do good things—he gave us minds, a passion for understanding how things work, and then he put in this world all these fascinating processes, which, if we figured them out, we could do good things, could feed more people—could feed more people without causing extensive damage to the environment. And cure disease and injury. And the list goes on. I think all that is good, and that God would be pleased that we would be using His creation to live better—I’m not saying more luxuriously, but more happily, contentedly, with each other.</p>

<p><strong>ER: But back to the topic—advances using biology in the next century. You had just mentioned medicine…</strong></p>

<p><strong>DL</strong>: So, yes, there’s also medicine. Now, obviously, in thinking about this, the use of stem cells comes to immediately the fore. There are a lot of diseases out there that you really <em>do</em> need to correct using cellular processes. Right now, we try to make these corrections through chemistry. For instance, we give you a pill, and that pill should interfere with something that’s going wrong in your body—and yet it’s really never adequate to just <em>interfere</em> with something that goes wrong in the body, because you don’t really set it right just by getting in the way of it.</p>

<p>The opportunity with stem cells is that you can say, “I’ll replace the cells in the body that are doing something wrong with cells that are actually doing it right again.” If you program cells to be neurons, heart cells, or bone cells, you can <em>regenerate</em> properly functioning physiology. Rather than, say, replacing a hip with a metal part, you could regenerate the bone, itself, or you could regenerate neurons in Alzheimer’s patients. Never in the past has medicine been able to regenerate a proper physiology; it’s only tried to replace it with an inadequate surrogate, or minimize how much damage a disease is doing. With the use of stem cells, you can actually imagine returning the body to its proper physiology.</p>

<p>A different use of stem cells is to generate human tissue in the laboratory for better studies of human physiology and pathology and improved testing of drug effectiveness and toxicity.&nbsp; This will be a major advance over animal models, because of the significant disparities between animal physiology and human physiology.</p>

<p>A key point to emphasize is that there are different kinds of stem cells, which involve big differences in potential concerns. For Christians, clearly, stem cells derived from embryos present a tremendous ethical issue. Fortunately, a good proportion of stem cell technologies can be pursued using stem cells from adult tissue. These cells can be stimulated to develop into certain tissue-specific physiological behavior, or can now even be “re-programmed” to become quite similar to the more broadly flexible stem cells derived from embryos but now not requiring the embryonic source. Happily, the days of reliance on embryo-derived stem cells appear to be over for purposes of beneficial technologies.</p>

<p>We also should consider genomic medicine, and what’s attractive about that field is that with the way we do medicine now, which is chemistry-based—say you have a disease, and we might give you a pill to correct it—well, the biggest problem with that is that while I think this pill will help ameliorate your condition, maybe it won’t. Maybe that drug only works in ten percent of the patients and not ninety percent.</p>

<p>For example, consider cancer. You’ve got a particular kind of cancer, and we prescribe a certain treatment… well, <em>hopefully</em> you’re among the lucky ten percent, and you’ll be in much better shape in two or three years. If you’re not, then we’ve wasted your time. In fact, we’ve probably hurt you rather than helped you, because we’re using chemistry to interfere with things, and even though we might be reducing the damage of some things, we’re probably causing toxicity elsewhere in the system, because that same chemistry is also interfering over there.</p>

<p>So the value of genomic medicine is to get enough information about you through sequencing your genome that we can say, “Ah, for you this particular pill is not a good idea; it will actually do more damage than good. But for your brother, it’s likely to work, and the ratio of benefit to harm is much better.” This is the reason genomic medicine is more imminent—it’s what’s closest on the horizon to being realized—because we can use the same drugs we have now, we’ll just be using them more effectively. At the moment, we can sequence genomes, and we do have these treatments that help, and it’s just a matter of matching up these two technologies.</p>

<p>Now, on the other hand, when you think about genome sequencing, you can find out all sorts of things, and you have to decide, “What if I learn something negative?”</p>

<p><strong>EDITOR’S NOTE</strong>: Join us next week as we continue the conversation about genomic medicine, bioengineering, and being a Christian in science.</p>
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        <pubDate>Tue, 12 Mar 13 08:00:34 -0700</pubDate>
        <dc:creator>Doug Lauffenburger, Ruppel, Emily</dc:creator>
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        <title>A Plea to My Shepherds</title>
        <link>http://biologos.org/blog/a&#45;plea&#45;to&#45;my&#45;shepherds?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/a&#45;plea&#45;to&#45;my&#45;shepherds?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>... I would exhort these, my fellow conservative evangelical shepherds and thinkers, to set aside all reticence and fear, emerge from anonymity, and storm the forum of discourse, engaging this most pressing matter with vigor, equanimity, and humility. In doing so, know upfront that there will be few handrails to guide; you will not be building upon an extensive precedence of published conservative thought.</description>
        <content:encoded><![CDATA[<p>As I mentioned in my <a href="http://biologos.org/blog/scripture-vs-the-facts-working-through-a-crisis-of-understanding/">last post</a>, I’m deeply troubled by my fellow conservative evangelicals’ skepticism – even hostility – towards much of modern science, and believe that barring change, this disposition will prove spiritually catastrophic to our children and grandchildren, who are today being taught that assertions of an ancient universe and macro-evolution are unequivocally incompatible with the Cross of Christ, and tomorrow will enroll in universities that powerfully demonstrate the integrity of these scientific claims, thereby setting the stage for devastating crises of faith for countless thousands of young believers.</p>

<p>That said, I genuinely empathize with those who are reluctant to abandon traditional theological concepts for newer, still- developing ones. Given spiritual leaders’ biblical mandate to protect their families and congregations against error, a responsibility for which God will hold them strictly accountable (James 3:1), I respect their refusal to expose their flock to ideologies they regard as conflicting with the Word of God.</p>

<p>I further understand pastors and theologians’ resistance to tethering theology—which is meant to provide a solid epistemological foundation—too closely to that intrinsically dynamic endeavor called science. All humans need ideological stability, perhaps especially so with respect to spiritual matters. Recognizing this, pastors rightly ask why they should abandon or substantially revise an internally-consistent systematic theology that has served the church with relative stability for many hundreds of years. Science, on the other hand, is a realm for adventurers, groundbreakers, and ideological athletes intent on not just polishing or expanding today’s body of knowledge, but shattering it when necessary. Resounding with the jousts and clashes of competing ideas and arguments, and the stunning reversals of ideas once widely held, science often appears to be a messy–even tumultuous–business. Spiritual shepherds are insistent that the epistemological dynamism that necessarily characterizes science never become the mainstay of the Christian experience, which must be fundamentally stable and dependable. They see wisdom in maintaining a safe distance between the Church and the choppy waters of science.</p>

<p>The question, then, is whether the waters of scientific thought, particularly with respect to the age of the earth and evolution, have sufficiently smoothed out to warrant conservative thinkers’ taking a deeper look. Of course, the catch-22 here is that this can’t be answered without actually embarking upon an expedition of exploration and investigation, much as I recently did. Once undertaken, however, the conservative explorer will likely be confronted by a formidable problem:</p>

<p>As I can personally attest, navigating the crowded forum of wildly-differing ideas as to how to resolve the faith-science divide can be terribly daunting. Making this especially disconcerting for the conservative is the sobering reality that amidst the chorus of conflicting theories, one finds very little <em>substantive</em> published input from respected conservative theologians. As a result, the conservative seeker is sure to find herself awash in an ocean of seemingly novel theological “solutions” that are fundamentally antithetical to her evangelical sensibilities. This is likely to result in the impression that there is in fact no way to reconcile the findings of modern science with the key doctrines of orthodox Christianity, and hence the termination of the endeavor. Not only was this dynamic a constant challenge to me, but has proved a stumbling block to many would-be seekers that I personally know.</p>

<p>Whence then change? I believe the breakthrough will begin with a particular subgroup of conservative evangelical pastors, elders, and theologians. I know firsthand that there are many who, truth be told, have not been entirely at peace with their fellow conservatives’ summary rejection of—and apologias against—the findings of mainstream science. They have a gnawing sense that devastation looms for the Church and her children unless detachment yields to engagement, and rhetoric to substance. These have likely admitted to themselves that despite stridently asserting anti-evolution/old-earth views, they actually don’t understand these views in depth (nearly every conservative pastor and elder I’ve spoken with has conceded this). To date, these shepherds and thinkers have remained silent about their misgivings, reluctant to be perceived by their congregations and peers as betraying true Christianity. Given the astonishing fruitfulness of modern science and the comparative barrenness of young-earth creationism, I believe these evangelical leaders may now finally regard themselves as justified in stepping forward and publicly questioning whether the latter is in fact the view that a truth-revealing God would have His people believe.</p>

<p>Indeed, if I may, I would exhort these, my fellow conservative evangelical shepherds and thinkers, to set aside all reticence and fear, emerge from anonymity, and storm the forum of discourse, engaging this most pressing matter with vigor, equanimity, and humility. In doing so, know upfront that there will be few handrails to guide; you will not be building upon an extensive precedence of published conservative thought. Rather, you will be pioneers, with the open prairie of contemplation and consideration before you and the Word of God as a faithful, orienting star. The journey will be at times confounding, often scary, and never without challenge. Yet only through such robust, self-critical analysis will you find yourself in a posture where God can correct and refine all that He would, and only after which will you be able to pass on to your flocks a cogent, truly harmonious portrait of our Lord and His Creation that finds rich consistency between His written and natural revelations. I firmly believe that the fuller, more deeply informed portrait of the Lord and His universe that emerges from this investigation will fill your congregations with an unprecedented new sense of awe at our beloved God as Creator, and profoundly enhance their worship of Him. This has certainly been the result of my own journey.</p>
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        <pubDate>Wed, 27 Feb 13 04:00:32 -0800</pubDate>
        <dc:creator>Stephen Blake</dc:creator>
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        <title>Denis Alexander on Understanding Creation Theology</title>
        <link>http://biologos.org/blog/denis&#45;alexander&#45;on&#45;the&#45;barriers&#45;to&#45;traditional&#45;creation&#45;theology?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/denis&#45;alexander&#45;on&#45;the&#45;barriers&#45;to&#45;traditional&#45;creation&#45;theology?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In this video Conversation, Denis Alexander asserts that contemporary Christians are not taking the early chapters of Genesis seriously enough.</description>
        <content:encoded><![CDATA[<!--<object width="533" height="300">
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<p>In this video Conversation, Denis Alexander addresses two prominent barriers for Christians to accept evolutionary creation. The first is Biblical interpretation. When contemporary Christians interpret the early chapters of Genesis literally, they do so out of a desire to take the text seriously. Yet the early church fathers saw these chapters as figurative—and that figurative interpretation did not lesson the important foundational truths taught in these passages. The contemporary literal reading is actually a modern approach to the text in that our scientific mindset inappropriately shapes the interpretation. Since science did not even exist at the time that Genesis was written, an overly literal interpretation can actually cause us to miss the inspired message that the Biblical authors were communicating.</p>

<p><span style="line-height: 1.3em;">The second barrier is the rhetoric of the New Atheists, who claim that it is impossible to accept evolution while still believing in God. Christians should challenge this. Traditional Christian views are not in conflict with modern science. Instead, they see nature as God's work, with St. Augustine writing that "nature is what God does." As humanity develops a scientific understanding of nature, we will only learn more about the handiwork of God.&nbsp;</span></p>
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        <pubDate>Fri, 15 Feb 13 07:00:14 -0800</pubDate>
        <dc:creator>Denis Alexander</dc:creator>
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        <title>A Faith Journey in a Medical Science Career, Part 1</title>
        <link>http://biologos.org/blog/a&#45;faith&#45;journey&#45;in&#45;a&#45;medical&#45;science&#45;career&#45;part&#45;1?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/a&#45;faith&#45;journey&#45;in&#45;a&#45;medical&#45;science&#45;career&#45;part&#45;1?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In particular, I was interested in pursuing a career in paleontology or ecology, and I became even more convinced in college, that I had to make a profound choice  – either I chose a career in science and reject YEC claims that had no basis in reality, or I would have to abandon a science career all together.</description>
        <content:encoded><![CDATA[<blockquote>Hearken unto this, O Job: Stand still and consider the wondrous works of God. <strong>(Job 37:14)</strong></blockquote>

<p>The majority of health care workers deal with the confusing issues of life, death, and the apparent random tragedy of disease that can devastate families emotionally, financially, and spiritually. In fact, when I separate myself from the sterile aspects of a lab test review or ordering of radiographic images, I often find myself extremely saddened by the reality that children suffer from chronic disease, and in that aspect, I have found my faith to be a salve for me. I have been involved in the field of medicine for a relatively short time, only 21 years since first starting medical school. I marvel daily about the advancements of this tool that we have named “modern medicine”. Indeed, in the past 20 years alone, the progress we have made in the diagnosis and treatment of cancer, cardiovascular disease, and infectious disease has been seemingly unstoppable. Despite these advances, we have not adequately addressed how we handle various aspects of suffering (physically, spiritually, and mentally) in long-term hospitalized patients, in patients with chronic disease, and in the elderly.</p>

<p>I have often been asked if my faith has been affected by being exposed to illness and death. I would resoundingly say “No”, but I know health care workers run the entire gamut of a belief in God. There was a time when I would have said otherwise; however, my lay interest in the processes of our Earth (biologic and geologic) has convinced me of a Creator. I am a Christian, and this essay will discuss how I use my scientific and medical background to justify my faith. If you are an atheist reading this essay, you will have realized that you and I have belief differences from the beginning of this writing. If you are an evangelical Christian, I want you to realize that I am not going to talk about my conversion or my baptism. That aspect of my life is not the point of my essay, but you should know, for background, that I do accept Jesus Christ as my Savior.</p>

<p>I was born and raised in central Texas where a large percentage of the population is evangelical Christian. As I progressed through public education, I had convinced myself that I was agnostic. This was a personal decision, not based on any family influence. In fact, I had Christian parents who were educators and who had an interest in my pursuing a science career as a way of opening my mind to the needs of humanity and intellectual fulfillment. However, my trail away from my Christian faith lasted about 15 years and was most influenced by many of my evangelical classmates, especially in high school and college. I was exposed to Young Earth Creationism (YEC) by many friends, and at that time, I did not think it was even possible to reconcile a Christian faith with my interest in science.</p>

<p>In particular, I was interested in pursuing a career in paleontology or ecology, and I became even more convinced in college, that I had to make a profound choice – either I chose a career in science and reject YEC claims that had no basis in reality, or I would have to abandon a science career all together. I was only aware of those two options at that time and was not aware of a third way leading to a reconciliation of my faith. I will admit that I was fairly angry about the absolutism provided by so many of my YEC-minded friends in the face of massive amounts of biologic and geologic data. I became angry about the concept of religion in a very self-centered sort of way. Eventually and after much contemplation, I ended up going to medical school after college as opposed to a career in natural history, as I decided that the job market was more stable in medicine.</p>

<p>Two particular events enabled me to completely reconcile my faith with science. First, I took a field research class that involved traveling through the southwest United States during the summer of my junior year of college. Seeing geologic layering and signs of erosion up close in areas such as the Grand Canyon and Bryce Canyon, as opposed to hearing about the concepts in the lecture hall, made me truly appreciate deep time (Figure 1). For example, although random events over millions of years formed beautiful geologic structuring of <a href="http://en.wikipedia.org/wiki/Hoodoos">hoodoos</a> in Bryce Canyon, the wind and rain making these amazingly beautiful sandstone columns spoke of the mechanistic properties of erosion. Seeing the effects of long-term erosion as being “beautiful” led me to wonder in my tent at night why consciousness was formed to allow humans to appreciate the majesty of nature. I was able to see the Milky Way at night as I camped in the various national parks, and I further contemplated the mechanisms of gravity, light, and star formation. I was captivated by this imposed beauty on the desert floor around me, the stark ruddy canyon walls, the conifer-filled woods, and the cloudless night with a waning moon. I kept a journal during my trip which I wrote in daily. I have read it again years later, and there are passages written, crossed out by pen, then written out again with some my first inklings that I likely believed in a Creator God.</p>

<p class="caption-center"><img alt="" height="427" src="http://biologos.org/uploads/static-content/pohl_figure_1.jpg" width="570" /><br />
Figure 1: In this picture, I am showing my daughter the various rock groups of the Grand Canyon at Grand Canyon National Park in Arizona. My visit to the canyon in college brought home to me the immensity of deep time and the beauty of a natural structure suggesting to me, in a strong way, that God must exist. When this picture was taken, I wanted my daughters to see what I saw, felt what I felt, thought what I thought, when I began to really be convinced there was a Creator.</p>

<p>The second aspect that brought me back into Christianity was exposure to a pastor in my late 20s. At this point, I was deep into my medical training as a pediatric gastroenterologist, but I was starting to attend church again, although not regularly. I also was working in a lab where we were using “knock-out” mice (mice with a gene removed to assess the resultant phenotype, or the observable traits) in order to determine the mechanisms of cirrhosis of the liver. Although my contribution to the lab was not ground-breaking, I was fascinated as to how a single gene deletion could lead to down-stream effects, including morphologic changes in the liver (i.e., cirrhosis). My research had demonstrated that specific gene mutations were leading to a diseased organ, and I came to believe that the genetic code encompassed in all living creatures was not likely explained as a random, undirected process.</p>

<p>The pastor with whom I was interacting with at that time had trained in astronomy prior to going into ministry, and it was fascinating to hear him reconcile his belief in an ancient universe with his faith. He was not the least bit worried about an ancient Earth and a far more ancient universe. He believed in a Sovereign God who could certainly provide for the mechanisms of the Big Bang and the resultant world that we live in. Over the months, my discussions with him led me back to reading my Bible daily for the first time, really, in my life. In my very humble and limited opinion, I could see that God, especially through the Gospels, provided an answer to what my purpose consisted of during my time here on Earth. I was to love and serve others as best I could, and I should let God be in control of the big stuff of life.</p>

<p>Here in the lab (and previously for me in the American southwest) there appeared to be sublime mechanisms at play in the world. Even when I looked at random processes (and I do believe that God allows randomness), the grandeur of life forms that have been present on our planet for hundreds of millions of years fascinated me. I did try to convince myself that randomness was evidence of no God, but I then decided that a Creator could certainly build randomness into any biologic or geologic system to allow for the abundance of detail that we see in the natural world around us.</p>

<p>Taken together, all of these views of the world in the micro- and macro-scale convinced me to come back to Christianity. I believe strongly that there is God who has allowed natural mechanisms to take place, random or not so random, which are exhibited throughout the universe. I certainly know that my wife, my children, and I will die someday, but a re-reading of the Gospels as well as reading the great Book of Nature around us reinforced in me that there was something more for all of us, even after death.</p>

<p>I have never regretted the re-discovery of my Christian faith. I especially take these thoughts with me, when I have to talk to families about sick or dying children. These are hard conversations to have, and I find comfort knowing that evidence of a creator God is ever present around us, even as each of us heads towards the end of life and subsequently, eternity.</p>
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        <pubDate>Tue, 12 Feb 13 07:00:35 -0800</pubDate>
        <dc:creator>John Pohl</dc:creator>
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        <title>Worshiping, Growing, and Learning</title>
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        <guid>http://biologos.org/blog/worshiping&#45;growing&#45;and&#45;learning?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Yesterday, biology professors Randy Moore and Sehoya Cotner raised the concern that workshops focused on evolution&#45;related training do not reach not reach creationism&#45;based biology teachers. Today, we&apos;d like to focus on BioLogos&apos; efforts to address that divide through our Biology by the Sea workshops.</description>
        <content:encoded><![CDATA[<p>Our third annual BioLogy by the Sea teachers’ workshop was another success. Middle and high school teachers from Christian schools came from all over the United States to take part in this weeklong workshop. Last year’s group continued studying biodiversity, while this year’s group studied developmental biology.</p>

<p>Showing Christian schoolteachers that one can be a believer who embraces the Bible as God’s inspired Word and evolution as His creative process has always been a mission of BioLogy by the Sea, the accomplishment of which is never guaranteed. During the first few days, several participants expressed doubt that their faith could be compatible with evolutionary creation. However, as the week came to a close, some of those who had previously denied compatibility seemed to be much more considerate of the notion—if not fully accepting of the idea altogether. If you’ve ever doubted evolution yourself, then you know that such acceptance is no small feat. There are numerous theological and philosophical barriers that must be dealt with, and to think that this could occur in the span of just one week is pretty amazing. Then again, the program had some pretty amazing guest speakers and activities—the most significant of which occurred throughout the week: prayer and worship to the One we all serve, our Lord and Savior Jesus Christ.</p>

<p>While these times served to glorify God and nurture participants’ souls, the week was also filled with activities designed to nurture participants’ minds through the study of biblical passages and biological content. In addition to graduate level courses and accompanying labs in either biodiversity or developmental biology, participants went on field trips to the intertidal zone, the Natural History Museum of Los Angeles County, the La Brea Tar Pits, and the Gaslamp Quarter. Furthermore, presentations given by Dr. Gregg Davidson, professor of geology and geological engineering from the University of Mississippi, and Dr. Mary Schweitzer, paleontologist and associate professor of marine, earth and atmospheric sciences from North Carolina State University, offered key insights into their fields and demonstrated how the tenants of both are based on evidence rather than conjecture.</p>

<p>In short, this year’s BioLogy by the Sea offered another comprehensive look at what it means to be a Christian who accepts the conclusions of mainstream science—not at the expense of our faith in God or His Word, but in light of it. We can only hope that these teachers, who spent an entire week of their summer break with us, left with not only a greater sense of oneness as the body of Christ, but also found new ways to engage their students in matters of science and faith—another facet of the program’s mission. After all, the first step in protecting the next generation from the faith crisis that many seem to experience after they learn about evolution from a secular perspective is showing that it need not be an either-or situation. It’s also an important part of ensuring that Christian young people can rise to the forefront of global scientific research.</p>

<p class="caption-center"><iframe src="http://player.vimeo.com/video/46269101" width="500" height="281" frameborder="0" webkitAllowFullScreen mozallowfullscreen allowFullScreen></iframe></p>]]></content:encoded>
        <pubDate>Wed, 23 Jan 13 07:00:17 -0800</pubDate>
        <dc:creator></dc:creator>
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        <title>Evolution and Creationism in America’s Biology Classrooms</title>
        <link>http://biologos.org/blog/teaching&#45;evolution&#45;and&#45;creationism&#45;in&#45;americas&#45;biology&#45;classrooms?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/teaching&#45;evolution&#45;and&#45;creationism&#45;in&#45;americas&#45;biology&#45;classrooms?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>High school biology courses have a strong and lingering impact on students’ views of evolution and creationism.</description>
        <content:encoded><![CDATA[<p>Although the evolution-creationism controversy has been one of the most abiding controversies in America during the past several decades, public attitudes about evolution and creationism have changed relatively little during that time. Indeed, since 1982, Gallup has consistently reported that 40-47% of Americans endorse young-Earth creationism, 35-40% believe that humans evolved but that God guided that process, and 9-16% believe that humans evolved but that God had no role in the process (Gallup, 2011). Similarly, a Harris Poll reported, “many more people believe in miracles, angels, hell and the devil than in Darwin’s theory of evolution” (Harris Poll, 2009).</p>

<p>These facts persist in the face of educational guidelines in most states that mandate the teaching of evolution, court decisions that have declared the teaching of creationism as unconstitutional and having “no scientific merit or educational value as science [because it] is simply not science” (<em>McLean v. Arkansas Board of Education</em>, 1982), thousands of scientific papers and books that document evidence for evolution, direct observations of evolution, and countless endorsements of evolution (and rejections of creationism) by professional scientific organizations. Decades of costly science education reform have not reformed popular acceptance of evolution: most of the public continues to see religion and mainstream science as diametrically opposed, and when presented with that choice, most will choose the supernatural over science, even when it means rejecting the foundations of modern biology. Why?</p>

<p>Many factors – for example, the media and religion -- influence people’s beliefs about the evolution and creationism, as well as their acceptance of science. One of these influences is education. What are students taught about evolution and creationism?</p>


<h3>Evolution and Creationism in High School Biology Courses</h3>
<p>Students have widely variable introductions to evolution in their high school biology courses. Although most states have educational guidelines that mandate the teaching of evolution, only about 70% of students entering college report that their high school biology courses included evolution (in some form) and not creationism. Although educational guidelines provide important support for teachers wanting to teach evolution, these guidelines are irrelevant to many biology teachers and administrators. </p>

<div class="see-also">For a detailed account of how skeptical Christian college students navigate the many social and religious concerns to reconcile their faith with evolutionary creation, see <a href="http://biologos.org/blog/series/evolution-and-personal-faith-christian-university-students">Mark Winslow’s series</a>.</div>

<p>Approximately 20% of students are taught neither creationism nor evolution in their high school biology courses (Moore, 2007). Another “cautious 60%” of biology teachers want to avoid controversy, and neither advocate evolution nor explicitly endorse nonscientific alternatives (Berkman and Plutzer, 2011). Even when teachers do teach evolution, they often cover the topic in a trivial or disparaging way (Bandoli, 2008, and references therein), thereby perpetuating a cycle of ignorance reinforced by popular opinion (Berkman and Plutzer, 2011). When these students arrive on college campuses, they are predisposed to remain skeptical of evolution, for their perceptions and prior knowledge strongly influence their learning.  This is especially important for evolution, for many students view evolution as negative and undesirable (Brem, Ranney, and Schindel, 2003) and sense an “overlap of some ideas that the theory [of evolution] advocates with other social, epistemological, and religious beliefs” (Hakoyem and BouJaode, 2008).</p>


<h3>The Creationists Down the Hall</h3>
<p>Most Americans reject evolution, and most biologists have grown accustomed to headlines such as “Four in 10 Americans Believe in Strict Creationism” (Gallup, 2010) and “In U.S., 46% Hold Creationist View of Human Origins” (Gallup, 2012). However, most biologists are less familiar with the fact that creationism is thriving among undergraduate biology majors (Verhey, 2005; also see above), biology graduate students (Gregory and Ellis, 2009), and former students who have become biology teachers (Berkman, Pacheco, and Plutzer, 2008; Moore, 2007, and references therein).</p> 

<p>Despite their training, many biology teachers are creationists. Indeed, fully one-sixth of biology teachers are young-Earth creationists (Berkman, Pacheco, and Plutzer, 2008), and a presentation of young-Earth creationism as legitimate science would presumably confuse students about the basic tenets of science in general, and of evolution in particular. Because teachers’ personal views about a subject affect their teaching of the subject (Carlesen, 1991; Grossman, 1989), and because teachers with strong religious convictions accept evolution less often than their less-religious peers (Trani, 2004), it is not surprising that many of today’s biology teachers explicitly teach creationism in their biology courses. Although few biology teachers in public schools teach creationism without mentioning evolution, 20-25% of today’s biology teachers teach evolution <em>and</em> creationism in their courses (Moore, 2007, and references therein). Although a handful of creationism-based biology teachers are confronted for their malpractice (e.g., Rodney LeVake; see Moore, 2004), most are tolerated — and sometimes even encouraged — to teach creationism, possibly because of pressure from the public and administrators to ignore evolution and/or teach creationism (Cavanagh, 2005, Verango and Toppo, 2005). As Don Aguillard, the lead plaintiff in <em>Edwards v. Aguillard</em> (1987) noted in 1999 (Moore, 1999), “Creationism is alive and well among biology teachers.”</p>

<h3>When Biology Teachers Teach Creationism, What Do They Teach?</h3>
<p>When biology teachers teach creationism, they usually present only a particular version of the Judeo-Christian creation story. Moreover, these stories are often presented as a scientific alternative to evolution (Moore, 2008), despite the fact that creation science has “no scientific or educational value as science [because it] is simply not science” (<em>McLean v. Arkansas Board of Education</em>, 1982). Relatively few biology teachers who teach creationism present it as religious idea, philosophical idea, or as part of a survey of several religions (Moore, 2008).  They do not “teach the controversy,” in other words, but present the relationship between modern evolutionary biology and their faith as one of self-evident conflict, assuming (and teaching) that their version of creationism is the only true alternative.</p>

<h3>Does It Matter When Biology Teachers Teach Creationism?</h3>
<p>Yes—high school biology courses have a strong and lingering impact on students’ views of evolution and creationism (Moore and Cotner, 2009). Students who were taught creationism in high school know significantly less about evolution when they enter college than do students who were taught evolution in high school. Similarly, students who claimed that most of their knowledge of evolution came from non-school sources (e.g., the media, church) knew less about evolution than did students who claimed that their primary source of knowledge about evolution was their high school biology class (Moore, Cotner, and Bates, 2009). </p>

<h3>Solving the Problem?</h3>
<p>Several studies have claimed that additional evolution-related training will help improve the teaching of evolution in high schools. We are not nearly as optimistic. Although workshops and short-courses presumably help and encourage teachers willing to consider teaching evolution, focused instruction about evolution often does not affect students’ or teachers’ acceptance of evolution (Alters and Nelson, 2002; Chinsamy and Plaganyi, 2008). Moreover, these workshops will not reach creationism-based biology teachers who are dedicated to substituting their religious beliefs for science in their classes. </p>

<p>In our experience, these teachers rarely attend such workshops, even if they are paid to do so, and even then their acceptance of evolution is unaffected. After all, these teachers have access to and know the evidence for evolution – it’s widely available, including in the textbooks that they adopt and use in their classes – and they are not convinced by that evidence. We know of no evidence that the availability of such solely science-focused workshops, seminars, and other forms of evolution-related education will significantly affect what creationism-based biology teachers teach. Since the impediments to better teaching of evolution are primarily the philosophical and religious views of biology teachers, programs that do not address the more personal, “non-science” issues of science educators directly and effectively are likely to have little impact on what students learn in high-school biology classrooms.  Instead, if further fact-based instruction in evolution is part of the answer, it is likely to be most effective with young children, who are developmentally primed to seek explanations for natural phenomena.  However, evolution instruction is essentially absent prior to high-school biology; by high school, a student’s teleological demands have likely been met by supernatural explanations, creating a cycle of adults who know little about evolution and teach creationism-flavored biology.</p>

<p>Creationism has long been popular among biology teachers (Moore, 2007), and there is no evidence that improved state educational standards, proclamations by professional organizations, and decades of science education reform have made much difference.  As John Scopes commented almost 50 years ago, “I don’t think the world changes very rapidly” (Anonymous, 1966).</p>

<p><strong><a href="#notes"-1" onclick="toggle_visibility('notes-1');">View Literature Cited</a></strong></p>
<div style="display:none;" id="notes-1">
<p>Alters, B.J., and C.E. Nelson. 2002. Perspective: Teaching evolution in higher education. <em>Evolution</em> 56, 1891-901.</p>
<p>Anonymous. 1966. Monkey trial, 1966 style. <em>Christianity Today</em> 10 (15), 45-46.</p>
<p>Bandoli, J.H. 2008. Do state science standards matter? <em>American Biology Teacher</em> 70, 212-216.</p>
<p>Berkman, M.B. and E. Plutzer. 2011. Defeating creationism in the courtroom, but not in the classroom. <em>Science</em> 331, 404-405.</p>
<p>Berkman, M.B., J.S. Pacheco, & E. Plutzer. 2008. Evolution and creationism in America’s classrooms: A national portrait. <em>PLoS Biology</em> 6 (5), e124 doi:10.1371/journal.pbio.0060124</p>
<p>Brem, S.K., M. Ranney, & J. Schindel. 2003. Perceived consequences of evolution: College students perceive negative personal and social impact in evolutionary theory. <em>Science Education</em> 87 (2), 181-206.</p>
<p>Carlesen, S.W. 1991. Effects of new biology teachers’ subject-matter knowledge on curricular planning. <em>Science Education</em> 757, 631-647.</p>
<p>Cavanagh, S. 2005. Treatment of evolution inconsistent. <em>Education Week</em> 25 (11), 1, 26-27.</p>
<p>Chinsamy, A. and E. Plaganyi. 2008. Accepting evolution. <em>Evolution</em> 62, 248-254.</p>
<p><em>Edwards v. Aguillard</em>, 482 U.S. 578 (1987).</p>
<p>Gallup Poll. 2010. Four in 10 Americans believe in strict creationism. Retrieved December 26, 2012, from <a href="http://gallup.com/poll/145286/Four-Americans-Believe-Strict-Creationism.aspx">http://gallup.com/poll/145286/Four-Americans-Believe-Strict-Creationism.aspx</a></p>
<p>Gallup Poll. 2011. Evolution, creationism, intelligent design. Retrieved December 26, 2012, from <a href="http://gallup.com/poll/21814/evolution-creaionism-intelligent-design.aspx">http://gallup.com/poll/21814/evolution-creaionism-intelligent-design.aspx</a></p>
<p>Gallup Poll. 2012. In U.S., 46% hold creationist view of human origins. Retrieved December 26, 2012, from <a href="http://gallup.com/poll/155003/Hold-Creationist-View-Human-Origins.aspx">http://gallup.com/poll/155003/Hold-Creationist-View-Human-Origins.aspx</a></p>
<p>Gregory, T.R., and C.A.J. Ellis. 2009. Conceptions of evolution among science graduate students. <em>BioScience</em> 59 (9), 792-799.</p>
<p>Grossman, P.L. 1989. Learning to teach without teacher education. <em>Teachers College Record</em> 91, 191-208.</p>
<p>Harris Poll. 2009. What people do and do not believe in. Retrieved December 24, 2009, from <a href="http://www.harrisinteractive.com/harris_poll?pubs/Harris_Poll_2009_12_15.pdf">http://www.harrisinteractive.com/harris_poll?pubs/Harris_Poll_2009_12_15.pdf</a></p>
<p>Hokayem, H., & S. BouJaoude. 2008. College students’ perceptions of the theory of evolution. <em>Journal of Research in Science Teaching</em> 45, 395-419.</p>
<p><em>McLean v. Arkansas Board of Education</em>, 529 F. Supp. 1255, (E.D. Ark 1982). </p>
<p>Moore, R. 1999. The courage and convictions of Don Aguillard. <em>American Biology Teacher</em> 61, 166-174.</p>
<p>Moore, R. 2004. Standing up for our profession: A talk with Ken Hubert. <em>American Biology Teacher</em> 66, 325-327.</p>
<p>Moore, R. 2007. What are students taught about evolution? <em>McGill Journal of Education</em> 42, 177-186.</p>
<p>Moore, R. 2008. Creationism in the biology classroom: What do teachers teach and how do they teach it? <em>American Biology Teacher</em> 70, 69-73.</p>
<p>Moore, R. and S. Cotner. 2009. Rejecting Darwin: The occurrence and impact of creationism in high school biology classrooms. <em>American Biology Teacher</em> 71, 1-4.</p>
<p>Moore, R., S. Cotner, and A. Bates. 2009. The influence of religion and high school biology courses on students’ knowledge of evolution when they enter college. <em>Journal of Effective Teaching</em> 9 (2), 3-11. </p>
<p>Trani, R. 2004. I won’t teach evolution; it’s against my religion. And now for the rest of the story. <em>American Biology Teacher</em> 66, 419-427.</p>
<p>Verango, D. and G. Toppo. 2005. “Call to arms” on evolution. <em>USA Today</em>, March 24, p. B5.</p>
<p>Verhey, S.D. 2005. The effect of engaging prior learning on student attitudes toward creationism and evolution. <em>BioScience</em> 55, 996-1003. </p></div>]]></content:encoded>
        <pubDate>Tue, 22 Jan 13 04:44:18 -0800</pubDate>
        <dc:creator>Randy Moore, Cotner, Sehoya</dc:creator>
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        <title>Science and the Bible: Assessing the Evangelical Encounter with Evolution</title>
        <link>http://biologos.org/blog/science&#45;and&#45;the&#45;bible&#45;assessing&#45;the&#45;evangelical&#45;encounter&#45;with&#45;evolution?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/science&#45;and&#45;the&#45;bible&#45;assessing&#45;the&#45;evangelical&#45;encounter&#45;with&#45;evolution?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Having now completed our study of the five main views about “Science and the Bible” held by conservative Protestants, I conclude with a final column, assessing the whole situation as I see it today.</description>
        <content:encoded><![CDATA[<p>Having now completed our study of the five main views about “Science and the Bible” held by conservative Protestants, I conclude with a final column, assessing the whole situation as I see it today. </p>

<p>For more than a century, evangelicals and fundamentalists have typically rejected both evolution and higher biblical criticism. Sometimes there are good reasons: the claims of some biblical scholars are so outrageous and the claims of some scientists so anti-religious, that a strongly negative response is entirely appropriate. Too often, however, the evangelical encounter with modern science conforms to what <a href=" http://www.youtube.com/watch?v=eQviXavl1BA">historian Mark Noll</a> has called “the scandal of the evangelical mind”—namely, “that there is not much of an evangelical mind.” Attitudes toward science have been crucial to this analysis. As Noll says, “since 1960 creationism has done more than any other issue except abortion to inflame the cultural warfare in American public life.” (p. 192) </p>

<p>Readers who want to know more about Noll’s book and its reception should go <a href="http://www.liberalevangelical.org/index.php?option=com_content&view=article&id=144:the-scandal-of-the-evangelical-mind-by-mark-noll&catid=68:reviews-recent-a-relevant&Itemid=123">here</a> and <a href="http://www.firstthings.com/article/2008/08/003-the-scandal-of-the-evangelical-mind-a-symposium-33">here</a>. His conclusions about evangelicals and science are fully consistent with those I am about to present.</p>

<h3>Evangelicals in Tension with Science</h3>

<p>Evangelicals exhibit <em><strong>considerable tension and ambivalence</strong></em> when it comes to science, especially human evolution. On the one hand, evangelicals enthusiastically embrace the findings of science, when it comes to most applications in medicine and engineering. They also accept the experimental sciences, such as physics, chemistry, physiology, or thermodynamics. They have no problems with gravitation, the periodic table, the circulation of the blood, or the law of entropy. Here, their attitude is highly empirical: if it can be shown from repeatable experiments and observations, it’s true and presents no challenge whatsoever to religious belief.</p>

<p>On the other hand, evangelicals are quite hesitant to accept some conclusions of the so-called historical sciences, such as geology, cosmology, and evolutionary biology. Fundamentalists reject the very legitimacy of those sciences, and have created their own alternative explanation, “creation science,” which comports with their particular views of biblical authority and hermeneutics. Evangelicals are more ambivalent. As we’ve seen, many evangelicals accept the big bang and modern geology, with a 4.65 billion-year-old earth and the enormously long history of living things before humans arrived on the planet. But evolution–understood here to mean the common descent of humans and other organisms–presents very serious problems for many, perhaps most, evangelicals. This motivates them to look for alternative views.  </p>

<p>The alternatives evangelicals embrace are precisely those we have studied in this series. Some eagerly support the YEC view. Others prefer one of the many varieties of the OEC view. Many like the strident tone of the ID movement, with its vigorous assault on biological and cultural “Darwinism” and its near-universal rejection of human evolution. For most evangelicals, however, TE is probably not a viable option at present, for biblical and theological reasons.</p>

<h3>Reconciling Evolution with Scripture</h3>

<p>Most evangelicals do not see any reasonable way to combine human evolution with the following beliefs:</p>

<ul><li>the uniqueness of humans, who alone bear the “image of God”</li>

<li>the fall of Adam and Eve, the original parents of all humans, from a sinless state, by their own free choices to disobey God</li>

<li>the responsibility of each person for their own actions and beliefs, within a universe that is not fully deterministic</li>

<li>the redemption of individual persons by the atoning sacrifice of Christ.</li></ul>

<p>Evangelicals cannot and must not be separated from these crucial beliefs about human dignity, freedom, responsibility, sin, and redemption. The 64-dollar question is: can these beliefs be maintained without simultaneously affirming the necessity of an historical, separately created first human pair? The answer is probably in the hands of evangelical academics, especially theologians and biblical scholars. Can they be persuaded that the scientific evidence for evolution is sufficiently strong to warrant a re-examination of the traditional view?  Can a credible gospel and credible science be harmonized?  </p>

<p>There exists an enormous gap between popular conceptions of science–conclusions, methods, and attitudes–and those of scientists themselves. This gap is not unique to science among practitioners of specialized knowledge, and it is not unique to evangelicals among the lay public.  But it is real and very significant, and it affects theologians and biblical scholars no less than anyone else. Those who try to bridge this gap are mostly scientists (in their role as educators at colleges and universities and insofar as they write books for lay readers) and science journalists.  Many influential members of those professional communities are skeptical or even strongly hostile toward Christian beliefs, and this can exacerbate an already difficult state of affairs. If ways can be found to popularize good science, while showing appropriate sensitivity to the concerns of evangelicals, it would be a very good thing.</p>

<h3>Signs of Hope</h3>

<p>Certainly there are reasons to hope.  The conversation about science and religion is considerably broader now than it was at the time of the Scopes trial in 1925. Back then, many Protestants faced a very grim choice. On the one hand, they could follow politician William Jennings Bryan and the fundamentalists, rejecting modern science in the name of biblical authority and orthodox beliefs. On the other hand, they could follow theologian Shailer Mathews and the modernists, rejecting biblical authority and orthodox beliefs in the name of modern science. There was no one out there like John Polkinghorne, Francis Collins, Joan Centrella, Owen Gingerich, Simon Conway Morris, William Phillips, or Ian Hutchinson—to name just a few of the many top scientists today who accept evolution while affirming the divinity of Jesus, the bodily resurrection, and the actual divine creation of the universe. But they are all scientists, not theologians (except for Polkinghorne, who is both). In Galileo’s day, it was the scientists who eventually convinced the theologians and biblical scholars to accept Copernicus’ theory of the earth’s motion around the sun. But, it took a long time, and the process was difficult and often painful. Thus far, the biblical scholars and theologians who have tried to move the conversation forward have not been very well received, as Richard Ostling has <a href="http://www.christianitytoday.com/ct/2011/june/historicaladam.html">so capably reported</a>. I suspect we are in for more of the same.</p>

<h3>It’s Your Turn to Talk</h3>
<p>That’s what I think. What do you think? I’ll mainly be listening quietly, since I’ve now said all I wanted to say. Thank you all for hanging in there for ten months—far longer than I had originally anticipated. After a short respite I’ll return with a new series, but I’ll keep the topic under wraps for the time being.</p>]]></content:encoded>
        <pubDate>Thu, 17 Jan 13 06:00:57 -0800</pubDate>
        <dc:creator>Ted Davis</dc:creator>
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        <title>Series: Made in the Image of God: The Theological Implications of Human Genomics</title>
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        <guid>http://biologos.org/blog/series/made&#45;in&#45;the&#45;image&#45;of&#45;god&#45;the&#45;theological&#45;implications&#45;of&#45;human&#45;genomics?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>This series by Denis Alexander reflects on advancements in genomics as well as their theological implications. He focuses on the relatedness of hominin genomes, arguing that this does not interfere with the image of God in humans. The image of God depends more on the capacity for relationship and covenant, not on a list of particular physical qualities. He then discusses why the recent studies of genomics provide “no grounds for genetic determinism.”</description>
        <content:encoded><![CDATA[<p class="intro">This post first appeared on <em><a href="http://www.huffingtonpost.com/dr-denis-alexander/made-in-the-image-of-god-_b_1182892.html" target="_blank">The Huffington Post</a></em>.</p>

<p>About a year ago I posted the <a href="/blog/made-in-the-image-of-god-the-theological-implications-of-human-genomics-1">first article in this series</a>, asking whether recent advances in genomics made any difference to the Judeo-Christian notion of humanity being made in the 'image of God'. That article focused on DNA sequencing data from our closest relatives. This article will focus on the issue of genetic determinism.</p>

<p>Theologians have spent many centuries mining the rich vein of the 'image of God' metaphor. Central to the idea is humanity with spiritual capabilities and responsibilities, equipped for moral decision-making and a relationally rich life in community. Historically, the idea has contributed to the conviction that each human individual has an absolute value, independent of their ethnicity, educational level, health status or income.</p>

<p>Do recent advances in genomics threaten or support such a view of humankind, or are they just neutral? Irrespective of one's belief in God, or not, this is of more than passing interest. Imagine the poor person wrestling for years with the great questions of life and finally deciding to become an atheist, only to then be informed that a cognitive bias derived from his particular set of genetic variants made that decision pretty much inevitable anyway. Such news might be equally unsettling for the person who had just struggled to faith following years of agnosticism. Our deepest human feelings are closely connected with the idea that we choose our own path through life.</p>

<p>The flourishing of genomics in the early part of the 21st century has certainly conveyed the message to many that one's destiny is written into one's genome. Whereas scientists are generally scrupulously careful not to give the impression that there is any such entity as a "gene for" some human trait, by the time the latest discovery appears in the media, such caution is often thrown to the winds. The past year has seen the trumpeting of a <a href="http://www.newscientist.com/article/dn20451-teen-survey-reveals-gene-for-happiness.html" target="_blank">"gene for happiness,"</a> a <a href="http://www.huffingtonpost.com/2011/11/15/kindness-genes-caring-trustworthiness_n_1093483.html" target="_blank">"kindness gene"</a> and a "believer gene." It is not even a question of education, but "genes are to decide" if you are a "caring person." <a href="http://www.decodeme.com/" target="_blank">Genetic testing websites</a> assure us that "your genes are a road-map to better health," and we all know that road-maps are fixed. Small wonder that there is a creeping genetic fatalism around that subverts the idea of personal responsibility.</p>

<p>Fatalism in itself impacts on human behavior. Studies have shown that subjects exposed to the writings of authority figures doubting free-will are then more likely to cheat. Conversely, workers convinced of the reality of free-will are rated higher in the work-place than those whose beliefs tend more towards determinism.</p>

<p>The reality is that recent genetics research has continued to move steadily away from any notion of genetic fatalism, highlighting the sheer complexity of the genome, and providing some fascinating examples of the ways in which our choices impact upon our own genomes. There is no gene "for" any complex human trait because in fact genes encode proteins or other types of information-containing molecules, and thousands of genes collaborate together during human development in interaction with the environment to generate the unique human individual that each person represents. Those requiring an introduction for the non-specialist are referred to <a href="http://www.amazon.com/Language-Genetics-Introduction-Templeton-Religion/dp/1599473437/ref=sr_1_2?s=books&ie=UTF8&qid=1325614584&sr=1-2" target="_blank">"The Language of Genetics."</a></p>

<p>Epigenetics adds further layers of variation and complexity. This refers to the chemical modifications of the DNA that cause genes to be switched on or off. It is such epigenetic modifications that generate the 220 specialized tissues of our bodies. Such acquired changes can even be inherited across several generations, certainly in plants and animals, and maybe in humans as well. In choosing to smoke, drink in excess, or take drugs, we also choose to modify our genomes.</p>

<p>So it turns out that even identical twins are not really genetically identical, developing different profiles of epigenetic modification as they go through life. This no doubt contributes to the otherwise surprising result that the age of death of identical twins, who share identical genomes, is comparable with that observed in non-identical twins, whose genomes are as different from each other as any two sibs. In one study of 184 pairs of twins in Spain, the difference in the age of death between the identical twin pairs was seven years on average, but such averages hide the fact that the age differences ranged from a couple of weeks to eighteen years. In the case of the non-identical twins, the difference in age at time of death was nine years, and the range was three to nineteen years. So there was really not that much in it.</p>

<p>What would happen if there was a genetic marker that identified nearly everyone in prison, marking them out as genetically distinct from half the world's population? What would that do to our ideas about genetic fatalism and convictions about moral responsibility? As it happens that marker already exists. Out of 131 countries worldwide, <a href="http://www.nationmaster.com/graph/cri_pri_fem-crime-prisoners-female&int=-1" target="_blank">an average of 96 percent of the prisoners are male</a> and, in this case, no complicated genetic studies are needed to know that the genetic marker that identifies this population is the Y chromosome. So universal is the correlation between the Y chromosome and criminality that we can safely say that no other genetic correlation will ever be found between a variant genome and criminality that surpasses this one. And yet we still hold nearly all males responsible for their criminal actions and put them in jail as soon as they're convicted. Furthermore, we note that most people who possess a Y chromosome go through life without committing a crime. So having a Y chromosome, with its unique set of genes, does not "determine" human criminality, although clearly we cannot go to the opposite extreme and say that it is completely irrelevant for patterns of human behavior.</p>

<p>The point in citing such examples is not to suggest that our genomes have nothing to do with our lives. They certainly do, not least in their significant contributions to our personality differences. The point rather is that the latest results in genetics provide no grounds for fatalism, instead highlighting the richness and diversity of the human population, and our own moral responsibilities, including the challenge to be good stewards of our genomes.</p>

<p>An argument for the existence of God this is not. But for those of us whose world-view is shaped by the conviction that we humanity are made in God's image, it is good to know that the latest genetics is consistent with such a perspective.</p>]]></content:encoded>
        <pubDate>Tue, 15 Jan 13 06:00:13 -0800</pubDate>
        <dc:creator>Denis Alexander</dc:creator>
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        <title>Series: Harmonizing Science, Ethics, and Praxis</title>
        <link>http://biologos.org/blog/series/harmonizing&#45;science&#45;ethics&#45;and&#45;praxis?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
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        <description>In this three&#45;part series, Cal DeWitt offers insights and examples of why science and ethics must work together to help us make informed, practical decisions within our society.  DeWitt’s science&#45;ethics&#45;praxis model provides a framework by which we can live more effectively as God’s stewards.</description>
        <content:encoded><![CDATA[<h3>The Science-Ethics-Praxis Triad</h3>

<p>Today, as I write, I am no longer in the desert of southern California, nor in the beech-maple forest of New Hampshire, but on a glacial drumlin in Waubesa Wetlands—a large marsh four miles south of Madison, Wisconsin. Here Ruth and I have our home, and here I study creatures whose watery habitats my neighbors and I have worked to save from eventual destruction. While my desert study site now is covered by a city where people live alone in the land—absent the desert creatures—my wetland study site remains occupied by all kinds of native plants and animals. Embracing it is the Town of Dunn, whose land stewardship plan helps people understand, serve, and maintain this and the other ecosystems. Our town stewardship plan encourages restoration of the landscape, protects agricultural lands, and strives to transmit an intergenerational heritage of secure and wholesome homes, livelihoods, and habitats for the animals, plants, and people that live here. We live largely in harmony and accord. </p>

<p>House-building on slabs poured onto desert sands first alerted me to the question of praxis, the third point on the napkin. But it was later, in my work as organizer of the Waubesa Wetlands Scientific and Agricultural Preserve, and as supervisor and later as chair of the Town of Dunn, that I came to realize that science and ethics do no earthly good unless put into practice. In serving my town, I came to apply what I had learned in the desert: praxis uninformed by science and ethics usually creates more problems than are solved.</p>

<p>“How do you put it all together?” those students in New Hampshire wanted to know. For me, it was building a framework for stewardship that simultaneously considered the questions “How does the world work?” “What is right?” and “What then must we do?” This science-ethics-praxis triad is a framework for living, for learning, for teaching, and most importantly for acting. It is a framework for stewardship.</p>

<p>In order to live and act rightly in the world, we need to know how the world works. We need to know how the systems that sustain us work, and how we interact with them. Without such knowledge we could drown in a flash flood, have our homes undercut by desert winds, cross the street in the path of an oncoming car, or get sick from consuming foods with toxic ingredients. As human beings develop more and more of the world, and as the reach of human actions extends regionally and globally, our knowledge must increase accordingly. This knowledge is not limited to what we acquire from a formal education; it also includes the knowledge we gain from family and friends, and from experience and experiment. In order to live and act rightly in the world, we need to know how the world works.</p>

<p>In order to live and act rightly in the world, we need to know what we ought to do. A century ago, this question was addressed in many colleges across America in a course for graduating seniors on moral philosophy. The purpose of this course was to convict students that they should apply their knowledge for the pursuit of good instead of pursuing self at others’ expense. At my university, this aspect of college education is expressed in a quotation from Abraham Lincoln carved in stone on a bench behind Lincoln’s statue at the top of Bascom Hill: “Let us have faith that right makes might, and in that faith, dare to do our duty.” The question “What is right?” is represented by the ethics corner of our triad. Moving directly from the Science corner to the praxis corner, or from the ethics corner to the praxis corner, proves problematic, even disastrous. Consider the result of going from knowledge of nuclear fission (science) directly to producing and dropping an atomic bomb (praxis), or moving from the belief that death is bad (ethics) to removing dead wood from forests (praxis); both are examples of these disastrous shortcuts.</p>

<p class="caption-left"><img src="http://biologos.org/uploads/static-content/DeWitt_Cover_thumb.jpg" alt="" height="270" width="200"  /></p>

<p>But knowing the science and observing the ethics of this stewardship framework does absolutely no good if it is not put into practice—placed into service. By themselves, the very best science and the most substantial ethics are no substitutes for action. We need to act appropriately and deliberately in the light of scientific and ethical knowledge. Praxis by itself, without being grounded in science and ethics, results in mere activism—activism that is unlikely to do good and that may produce harm. All three corners of the triad are essential—but not by themselves. Taken together and working interactively, they provide a framework for stewardship.</p>

<p>But will these three operate in dynamic interaction? Will they interact in ways that preserve and achieve the integrity of human life and the environment? The answer depends on what we know and understand about ourselves and the world (science), what we believe we should do (ethics), and what we in fact do, and how we respond to our successes and failures (praxis). It depends on our will, our motivation, our determination, and our dedication to strive for a harmonious world of creatures before their Creator. What might make us strive for such a world?</p>

<p class="intro">Part 3 explores the challenge of translating ideals into concrete actions.</p>
]]></content:encoded>
        <pubDate>Wed, 09 Jan 13 06:00:09 -0800</pubDate>
        <dc:creator>Calvin DeWitt</dc:creator>
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        <title>Introducing the BioLogos Navigator</title>
        <link>http://biologos.org/blog/introducing&#45;the&#45;biologos&#45;navigator?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/introducing&#45;the&#45;biologos&#45;navigator?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Part of BioLogos mission is to show how all things hold together in Christ—to show how a Christian worldview integrates the knowledge we have of God through the Scriptures with the knowledge we have of God through the other areas in which He reveals himself as Creator and Redeemer.</description>
        <content:encoded><![CDATA[<p>When we at BioLogos affirm that, “all things hold together in Christ,” what do we mean?  In short, we believe that there is no aspect of creation or of human experience that does not fall under the sovereignty and authority of God, and that He does not claim for himself and intend for redemption.  After all, at his resurrection, Jesus himself said, “All authority in heaven and on earth has been given to me” (Matthew 28:18). But more than just proclaiming God’s sovereignty over creation, we believe that God is revealing himself in every aspect of creation, as well—that led by the Holy Spirit, we will find pointers to God wherever we turn our gaze.  Christian knowledge, therefore, is not limited to the study of the Scriptures or of Church History, but includes the study of the natural world and of all of human culture, as well.  In fact, to fully appreciate God’s abundant grace and providence, we need to be looking to all of these domains of knowledge as domains of revelation, too. </p>

<p>Part of the BioLogos mission, then, is to show <em>how</em> all things hold together in Christ—to show how a Christian worldview integrates the knowledge we have of God through the Scriptures with the knowledge we have of God through the other areas in which he reveals himself as Creator and Redeemer.  Our website contains a wealth of Christian scholarship in a wide range of fields—from biology, to cosmology, to mathematics, to Biblical studies, to history, to theology—all demonstrating that the best contemporary science is compatible with Biblical Christian faith. But today we introduce a new tool—the BioLogos Navigator—to make these posts more accessible, and to show how they inter-relate (see sidebar on the right).  </p>

<p>Modeled on the astrolabes that early astronomers and sailors used to orient themselves under the heavens, our Navigator makes the cross of Christ the starting point by which we understand the cosmos.  Each of the four arms of the cross represents one of the domains of knowledge and experience through which God reveals himself to the world: Scripture, the Church, Nature and Culture.  These domains are not in opposition to each other, but are complementary and inter-related areas through which we can recognize God at work in the world. Linking these four domains is a network of specific topics relevant to the science and faith conversation.  Their arrangement suggests how each relates to the four domains but also to teach other.  Clicking on an individual topic tag highlights not only that topic, but other topics that are linked to it—sometimes in unexpected ways.</p>

<p>Clicking a topic tag a second time takes you to the Topic Landing page: a curated selection of the best resources on that subject from the BioLogos archives.  (The image above shows the <em><a href="http://biologos.org/navigator/Christianity+&+Science+-+Then+and+Now">Christianity & Science—Then and Now</a></em> Landing page, complete with Navigator and highlighted tags.) At the bottom of each page is a link to our Resource Finder, where you can investigate additional materials on that topic, as well. By exploring the relationships between the topics on the Navigator itself, and by delving deep into each topic via the resources presented on the landing pages, readers can focus on specific aspects of the harmony between science and Christian faith while also getting the wide view of God’s providential work in all things in the heavens and on the earth. </p>

<p>In the coming days and weeks, the BioLogos Navigator will be more fully integrated into the rest of the site, accessible directly from the Forum homepage and from the Resources dropdown list at the top of every page.  We’ll also be including features that help place each blog post on the “knowledge map” defined by the domains and topic tags.  Finally, the Topic Pages will also be periodically updated with the latest and best new materials in each topic. In the meantime, <strong>you can access the Navigator by clicking anywhere on the small image in the sidebar, above</strong>, and find a link to this post at the upper right corner of our homepage.  So take some time to explore our site with this new tool, which we think will to help orient our readers in the science and faith conversation, while always pointing to Jesus, the Christ, through whom all things were made.</p><br />]]></content:encoded>
        <pubDate>Thu, 27 Dec 12 06:19:49 -0800</pubDate>
        <dc:creator>Mark Sprinkle</dc:creator>
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        <title>Surveying George Murphy&apos;s Theology of the Cross</title>
        <link>http://biologos.org/blog/surveying&#45;george&#45;murphys&#45;theology&#45;of&#45;the&#45;cross?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/surveying&#45;george&#45;murphys&#45;theology&#45;of&#45;the&#45;cross?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>If God himself is willing to die, particularly in such a gruesome way, then perhaps we should at least consider the possibility of God allowing the death of other creatures, too. But would this really be compatible with what we know of God through Scripture?</description>
        <content:encoded><![CDATA[<p style="margin: 0px 30px 0px 30px;"><em>Truly, I say to you, unless a grain of wheat falls into the earth and dies, it remains alone; but if it dies, it bears much fruit</em>. —John 12:24</p>

<h3>Introduction</h3>

<p>One of the reasons that some of us are hesitant to accept evolutionary creation is that it seems to make God responsible for the suffering and death of innumerable creatures over millions of years—before humans ever existed or sinned against their creator.  Since we believe in and worship a God who is loving, benevolent, and all-powerful, it sounds quite implausible that our God would have created a world like that; therefore, any scientific evidence for evolution <em>must</em> be incorrect.</p>

<p>Other people look at the scientific evidence for evolution and find a compelling case that it has taken place during our earth's history.  On this basis they may conclude that if evolution is true, then the belief in an all-powerful, perfectly good God must be false!</p>

<p>The trouble with both of these views is that they tend to invoke a completely abstract, philosophical god, not the living God of the Bible—the God who became a human being, experienced unimaginable suffering, and died in a grotesque and humiliating public display.  The death of Jesus completely defied the expectations (and common sense) of his followers, as well as the expectations of any “rational” understanding of the way the Creator of the universe should act in the world.  On the cross, in the person of Jesus, God took upon himself far more suffering than any creature has ever experienced.</p>

<p>If God himself is willing to die, particularly in such a gruesome way, then perhaps we should at least consider the possibility of God allowing the death of other creatures, too.  But would this really be compatible with what we know of God through Scripture?  In this essay, we will explore this quandary through a “theology of the cross”, a concept articulated by pastor George Murphy in his book <em>Cosmos in the Light of the Cross</em>.<sup>1</sup> </p>

<h3>Theology of the cross</h3>

<p>Before we jump into the theological problems associated with evolution, let’s take a look at how we understand Christian theology itself.  For the reformer Martin Luther, any theology (or science) that tries to reach knowledge of God apart from the cross is bad theology.<sup>2</sup>  Instead, Luther pointed to a <em>theologia crucis</em>, in which the true God is seen first and foremost “through suffering and the cross”. To make his point even clearer, Luther insisted that “the CROSS alone is our theology”.<sup>3</sup>   It is the lens through which we view <em>everything</em>.</p>

<p>Of course Martin Luther, having lived in the 16th century, was not aware of the vast history of life on our planet (or any other aspect of modern science, for that matter), but George Murphy draws from Luther’s teachings the foundation that all human knowledge begins with the Word made flesh and crucified.<sup>4</sup>   With the cross of Christ as the ultimate framework through which we view reality, we are bound to view the processes of nature quite differently.  As Murphy explains it,</p>

<blockquote>A theology of the cross is an explication of belief in a God who becomes a participant in the history of the universe and thereby shares in the suffering, loss, and death that are part of worldly experience.<sup>5</sup></blockquote>

<p>God does not sit idly by and watch unaffected as his creatures suffer, but neither does he swoop in and make everything completely effortless and easy.  Instead he chose another way, the crucifixion of Jesus—certainly not the approach that we would have preferred! The apostle Peter went so far as to try to talk Jesus out of it, but he was met with a stern rebuke (Matthew 16:21-23).</p>

As humans, we are inclined to recoil in horror at the idea of God being closely associated with the death.  Yet in the crucifixion we are forced to think of death and God together.  Jesus himself did not draw back from immense pain and suffering, but instead works <em>in</em> it and <em>through</em> it to accomplish his plans. In the cross we learn who God is, the One who brings new life from death (and ultimately conquers death completely).<sup>6</sup> 

<h3>Why is evolution so disconcerting to Christians?</h3>

<p>The problem of suffering throughout all of human history is troubling enough for us to reconcile with a loving, personal God.  But in addition to that, the discovery of vast numbers of fossils reveals that death has taken place on a far greater scale than we had ever imagined.  Both the wide variety of extinct creatures and their sheer numbers is quite staggering, and it raises questions about our Creator:</p>

<blockquote>The picture of a God who is immune from suffering and death but who forces organisms through millions of generations and extinction is disturbing to those who believe in a God of love.<sup>7</sup></blockquote>

<p>The mass extinction of life on earth was already well established by the early 19th century—decades before Darwin’s research—and extinction can be empirically verified independent of any theory of evolution.<sup>8</sup>   The fact that the earth’s crust is a veritable graveyard of long-lost creatures is deeply troubling, and as late as the 1790’s, distinguished intellectuals such as Thomas Jefferson denied the very possibility of extinction.<sup>9</sup></p>

<p>But in addition to the reality of species extinction, the theory of evolution by natural selection proposes that new species also arise in an environment containing widespread pain and death.  Both the creatures that are now living and those that are gone are tainted by an “acrid smell of death”.<sup>10</sup>  It makes us wonder, if our Creator is not the God of the dead, but of the living (Mk. 12:27), where is God’s presence in the evolutionary picture?</p>

<p>In all honesty, creation through evolution is not what we would <em>expect</em> from God, but Scripture is full of examples in which God acts in unexpected ways.  After all, God’s choosing to undergo an agonizing death on a cross is not what we would expect from the all-powerful Creator of the universe, either.  In both cases, new life comes about through pain, suffering, and death.  As George Murphy puts it,
</p>

<blockquote>A priori ideas about God have to be overcome, and God's character has to be learned from God's self-revelation.<sup>11</sup></blockquote>

<p>God’s fullest self-expression is in Jesus Christ himself, one who is intimately familiar with and personally endured creaturely pain and death.  The theology of the cross reveals that God's self-revelation takes place in situations of suffering, loss, and apparent hopelessness, much like situations that occur through natural selection.<sup>12</sup></p>

<h3>The crucifixion is disconcerting too</h3>

<p>Not only is creation through evolution an unexpected and unsettling process, but so is the crucifixion of Jesus!  Killing someone by hanging them on a cross is an unbearably painful, prolonged, humiliating form of death. It was such a horrific type of public execution that it wasn't until after the Roman Empire stopped the practice of crucifixion—and people no longer witnessed it personally—did the cross become a visual object of devotion.<sup>13</sup> Our culture is sufficiently removed from crucifixion that we are desensitized to its original significance, but to connect it to our current context, imagine the reaction you would get by wearing jewelry designed to look like an electric chair.<sup>14</sup></p>

<p>Once we are more attuned to the brutality of crucifixion, it seems all the more striking that the cross is the sign of God’s work, what George Murphy calls “the trademark of God”.<sup>15</sup>   The suffering and death of Jesus is featured prominently in the Gospels, but the crucifixion-resurrection pattern is strongly resonant within the Old Testament, too.  Israel suffered and toiled as slaves in Egypt for centuries before they were rescued in the Exodus, bringing life to a people who were spiritually dead.  Centuries later, the nation of Israel would experience death again when the Babylonians destroyed the Davidic monarchy, burned their Temple, killed their people, and sent many into exile.<sup>16</sup>  Neither Israel (God’s chosen people) nor Jesus (God’s own son) were spared from death and suffering; rather, suffering seems to have been the way in which God re-forms and renews humanity to fully bear His own image.</p>

<h3>Redemption extends to all of creation</h3>

<p>Fortunately, God’s story does not end with death.  God gives new life after his creatures have been subjected to terrible circumstances.  Redemption was promised to Israel itself—Ezekiel’s vision of the valley of dry bones describes how God would renew His chosen people (Ezek 37:1-14).  Later, the astonishing resurrection of Jesus made salvation possible not only for Jews, but for all people in Christ (Gal 3:26-29).  Ultimately, the New Testament makes it clear that God’s renewal will encompass the entire Creation:</p>

<blockquote>For God was pleased to have all his fullness dwell in him, and through him <strong>to reconcile to himself all things, whether things on earth or things in heaven</strong>, by making peace through his blood, shed on the cross. (Colossians 1:19-20)</blockquote>  

<blockquote>With all wisdom and understanding, he made known to us the mystery of his will according to his good pleasure, which he purposed in Christ, to be put into effect when the times reach their fulfillment—<strong>to bring unity to all things in heaven and on earth</strong> under Christ. (Ephesians 1:8-10)</blockquote>

<p>Christians are accustomed to thinking of the death of Christ in regard to humans, but our culture rarely acknowledges God plan for the redemption of His entire creation.  This is partly attributable to the fact that discussions of creation and origins are often separated from the topic of salvation.<sup>17</sup>   In doing so we tend to marginalize Jesus as we argue about Genesis.  Rather than fall into this trap, if we view nature through a theology of the cross, we will see Christ as both the alpha and the omega point in discussions of life’s history and life’s future.  With this perspective, we are more apt to sense our solidarity with the rest of creation as we wait in eager anticipation of a glorious future:</p>
	
<blockquote>The creation waits in eager expectation for the children of God to be revealed. For the creation was subjected to frustration, not by its own choice, but by the will of the one who subjected it, in hope that the <strong>creation itself will be liberated from its bondage to decay and brought into the freedom and glory of the children of God</strong>. (Romans 8:19-21)</blockquote>

<h3>Conclusion</h3>

<p>As part of the Church’s conversation about the problem of natural evil, this essay is meant to be a brief introduction to a “theology of the cross”.  One can explore this concept in greater detail in Murphy’s book <em>The Cosmos in the Light of the Cross</em>.  While there is a lot more to be said, let me conclude with the following observation:  though evolution may not be compatible with <em>some</em> interpretations of Christianity, <strong>evolutionary creation is certainly compatible with the crucified Christ and the theology of the cross</strong>.  In the person of Jesus, God suffers with the world and ultimately redeems it.  As George Murphy puts in, “The world's pains are God's stigmata.”<sup>18</sup></p>

<h3>Explore this Topic Further</h3>

<ul><li>Miller, Keith. <a href="http://biologos.org/blog/series/death-and-pain-in-the-created-order">“And God saw that it was good”: Death and Pain in the Created Order</a>. BioLogos series</li>

<li>Murphy, George L. <em>The Cosmos in the Light of the Cross</em>. Harrisburg, PA: Trinity Press, 2003.</li>

<li>Murphy, George L. “Cross, Evolution, and Theodicy: Telling It Like It Is”. In <em>The Evolution of Evil</em>. Edited by G. Bennett, M.J. Hewlett, T. Peters, and R.J. Russell. Göttingen: Vandenhoeck & Ruprecht, 2008.</li>

<li>Southgate, Christopher. <em>The Groaning of Creation: God, Evolution, and the Problem of Evil</em>. Louisville, KY: Westminister John Knox Press, 2008.</li></ul>

<h3>Notes</h3>
<p class="date">1.  Murphy, George L. <em>The Cosmos in the Light of the Cross</em>.  Harrisburg, PA: Trinity Press, 2003.<br />
2.  Murphy, p34<br />
3.  “CRUX Sola Est Nostra Theologia,” in <em>D. Martin Luthers Werke, Kritische Gesammtausgabe</em> (Weimar: Hermann Boehlau, 1892), 5:172.  The captitalization is in the original.  Cited in Murphy, p26.<br />
4.  Murphy, p108<br />
5.  Murphy, p4<br />
6.  Murphy, p43<br />
7.  Murphy, p3<br />
8.  Some Christians ascribe animal death to some combination of Adam’s fall and Noah’s flood, but this does not resolve the problem that the animals are still suffering and dying through no fault of their own.  See Keith Miller’s BioLogos series <a href="http://biologos.org/blog/series/death-and-pain-in-the-created-order">Death and Pain in the Created Order</a> for the limitations inherent in a fall-based theodicy.<br />
9.  Rudwick, Martin. <em>The meaning of fossils: Episodes in the history of paleontology</em>. Chicago, University of Chicago Press, 1985.<br />
10.  See Jeff Schloss’ BioLogos essay <a href="http://biologos.org/blog/series/southern-baptist-voices-evolution-and-death-series">Evolution, Creation, and the Sting of Death</a><br />
11.  Murphy, p63<br />
12.  Murphy, p122<br />
13.  Murphy, p27<br />
14.  This example is drawn from an evangelical outreach event held by a Christian student group in Innsbruck, Austria.  On campus one day, they started conversations with their classmates by asking the question, “Would you wear an electric chair on your neck?”<br />
15.  Murphy, George L.  <em>The Trademark of God: A Christian Course in Creation, Evolution, and Salvation</em>. Wilton, Conn.: Morehouse-Barlow, 1986.<br />
16.  Murphy, <em>Cosmos in the Light of the Cross</em>, p 31-32.<br />
17.  Murphy, p35<br />
18.  Murphy, p87</p>

]]></content:encoded>
        <pubDate>Tue, 04 Dec 12 04:00:47 -0800</pubDate>
        <dc:creator>Thomas Burnett</dc:creator>
        <!--<dc:date>Dec 04, 2012 04:00</dc:date>-->
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            <item>
        <title>Series: Confronting Our Fears</title>
        <link>http://biologos.org/blog/series/confronting&#45;our&#45;fears?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/confronting&#45;our&#45;fears?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In this series, U.S. Navy Commander Mike Beidler shares his own personal journey from accepting young&#45;earth creationism to embracing evolutionary creationism.</description>
        <content:encoded><![CDATA[<p>As we continue our tour of fears that confront evangelicals considering evolutionary creation, I’d like to start with an extended (and possibly familiar) quote from Augustine about what’s at stake when we ask, “What if I’m wrong?” </p>

<blockquote>Usually, even a non-Christian knows something about the earth, the heavens, and the other elements of this world, about the motion and orbit of the stars and even their size and relative positions, about the predictable eclipses of the sun and moon, the cycles of the years and the seasons, about the kinds of animals, shrubs, stones, and so forth, and this knowledge he holds to as being certain from reason and experience.<br /><br />
Now, it is a disgraceful and dangerous thing for an infidel to hear a Christian, presumably giving the meaning of Holy Scripture, talking nonsense on these topics; and we should take all means to prevent such an embarrassing situation, in which people show up vast ignorance in a Christian and laugh it to scorn. The shame is not so much that an ignorant individual is derided, but that people outside the household of faith think our sacred writers held such opinions, and, to the great loss of those for whose salvation we toil, the writers of our Scripture are criticized and rejected as unlearned men. <br /><br />
If they find a Christian mistaken in a field which they themselves know well and hear him maintaining his foolish opinions about our books, how are they going to believe those books in matters concerning the resurrection of the dead, the hope of eternal life, and the kingdom of heaven, when they think their pages are full of falsehoods and on facts which they themselves have learnt from experience and the light of reason? <br /><br />
Reckless and incompetent expounders of Holy Scripture bring untold trouble and sorrow on their wiser brethren when they are caught in one of their mischievous false opinions and are taken to task by those who are not bound by the authority of our sacred books. For then, to defend their utterly foolish and obviously untrue statements, they will try to call upon Holy Scripture for proof and even recite from memory many passages which they think support their position, although they understand neither what they say nor the things about which they make assertion.<sup>1</sup><br /><br />
– St. Augustine of Hippo (AD 354-430)</blockquote>

<p>For a good portion of my life, I had an extremely difficult time admitting that I was wrong.  To do so was an admission of intellectual failure, faulty logic, or simple <em>ignorance</em>—not knowing everything about everything.<sup>2</sup>  Being wrong is a hard pill to swallow sometimes, because in many cases it equates to losing face.  As it pertains to the creation-evolution debate, I believe that we evangelical Christians tend to express that fear by “holding the line” against certain areas of scientific study, rather than being willing to admit that we might be wrong.  In most cases, we have no problem accepting the authority of the world’s best physicists, chemists, meteorologists, engineers, and physicians.  Our problem tends to be with scientific authorities in only certain areas of study, such as biology, anthropology, paleontology, geology, and astronomy.  Why?  It’s because the Bible is the divinely inspired word of God and these areas conflict with the plain reading of Scripture, right?</p>

<p>When we evangelicals come to the table of scientific discussion, we tend to pick and choose those “foods” which appeal to us, while wrinkling our noses at what our theological tastes find disagreeable.  As long as the menu includes a wide assortment of things we already like, and we share the table with people with similar tastes, we can get along just fine with this strategy.  But is this wise in, say, a survival situation?  Food is food, and if we’re hungry enough and don’t have a life-threatening allergic reaction to something specific, I would venture to guess that we’d dig right in without a second thought.  In regard to the creation-evolution debate, I am convinced that the evangelical church will find itself in dire straights if we intentionally starve ourselves intellectually, especially with a healthy banquet in full sight and within reach.  I also think having a too-restricted “diet” limits our ability to sit down with those outside the church and can, as Augustine believed, play a role in actually prohibiting the secular world at large from coming to a saving knowledge of Christ, “to the great loss of those for whose salvation we toil.”  Several years ago, Bruce Waltke, former Evangelical Theological Society president and former professor of Old Testament at Dallas Theological Seminary, updated Augustine’s caution in a brief <a href="http://biologos.org/blog/why-must-the-church-come-to-accept-evolution">video</a> production for BioLogos, suggesting that the church risks losing our ability to really interact with the world if we don’t trust God’s providence in this area. Wheaton College’s Professor of Christian Thought, Mark Noll, as the very first sentence of his book <em>The Scandal of the Evangelical Mind</em> writes, “The scandal of the evangelical mind is that there is not much of an evangelical mind.”<sup>3</sup> If not for the fact that I’ve never met Professor Noll, I’d believe he was talking about me a decade ago.</p>

<p>What drives us evangelical Christians to “hold the line” against acknowledging truths in these certain categories of scientific knowledge?  After undergoing several theological shifts myself over the last decade, and seeing others do the same, I believe I’ve been able to “reverse engineer” what happened in my own life: It was a subtle slide from a confident faith into a comfortable, unwitting arrogance.  When we believe that we are in an intimate spiritual union with the Creator of the universe, it’s quite easy to forget (if we ever understood this in the first place) that God can couch theological truth in a variety of literary genres and, yes, even in the context of ancient, scientifically inaccurate cosmologies.<sup>4</sup> Caught up in the awesome truth of spiritual union, what makes perfect sense to us at any particular point in our spiritual walk can be easily confused with “<em>the</em> truth.”  We also gravitate toward churches that conform to our particular belief systems.  We prefer pastors who preach to the choir.  We buy books that support our particular theological system.  To attend another church, listen to a theologically edgy pastor, or read a book from a completely opposite viewpoint from what we’re accustomed to would be to invite a considerable measure of tension into an otherwise comfortable intellectual and spiritual environment. </p>

<p>How many of us actually have or take the time to study evolutionary biology, theology, the history of biblical interpretation, ANE literature, or modern translations of Babylonian creation myths?  I would venture to guess that very few of us have the same opportunities that professional scientists and theologians take for granted in their academic careers.  To overcome the fear of losing intellectual face, I recommend exposing oneself to different ways of thinking about these topics, including perspectives that you might deem “outside the box.”  Reading multi-view comparisons and critiques, such as those found in Zondervan’s wonderful Counterpoints series,  is particularly helpful in this regard.  Familiarity with and exposure to these views helps temper that initial fear or shock when we come across those few brothers and sisters in Christ who opt to take another approach to any one topic.  (One youth pastor friend of mine, when discovering my views on a particular topic, approached me and excitedly exclaimed that meeting me was like meeting a dragon: “You hear stories about them, but you never see one!”)  </p>

<p>A word of warning:  Before I adopted evolutionary creationism, my neatly packed theology was virtually stress-free.  Ignorance was truly bliss.  Then came the paradigm shift, and all sorts of previously suppressed tension, questions, and doubts rose to the surface.  Another word of warning:  If you’re <em>not</em> confronted with tension, questions, and doubts in your day-to-day spiritual walk, something’s wrong.  Wrestling with theological issues is not an activity to be avoided; it is a discipline to be vigorously pursued!  If you are comfortable enough in your relationship with the risen Savior, you should not fear admitting your ignorance on various topics and entering into a period of temporary uncertainty.  This fear can be remedied by taking advantage of a fully informed palette of theological options provided by genuine Jesus followers, including those that embrace biblical criticism.  If one’s faith is truly rooted in the One by, for, and through Whom all things were made, all the theories put forth by the higher biblical critics and esoteric scientists should be no cause for fear—but all should be cause for loving dialogue.</p>

<h3>Notes</h3>
<p class="date">1. St. Augustine of Hippo, <em>The Literal Meaning of Genesis (De Genesi ad litteram)</em>, Trans. J. H. Taylor, in <em>Ancient Christian Writers</em> (Long Prairie, MN: Newman Press, 1982), vol. 41.<br/>
2. “Ignorant,” Oxford Dictionaries, accessed October 08, 2012, <a href="http://oxforddictionaries.com/definition/english/ignorant">http://oxforddictionaries.com/definition/english/ignorant</a>.<br/>
3. Mark A. Noll, <em>The Scandal of the Evangelical Mind</em> (Grand Rapids: William B. Eerdmans Publishing Company, 1994), 3.<br />
4. See Denis Lamoureux, <em>Evolutionary Creation: A Christian Approach to Evolution</em> (Eugene, OR: Wipf and Stock Publishers, 2008); Brian Godawa, <a href="http://biologos.org/uploads/projects/godawa_scholarly_paper_2.pdf">“Mesopotamian Cosmic Geography in the Bible,”</a> accessed October 04, 2012.</p>

]]></content:encoded>
        <pubDate>Fri, 30 Nov 12 03:58:59 -0800</pubDate>
        <dc:creator>Mike Beidler</dc:creator>
        <!--<dc:date>Nov 30, 2012 03:58</dc:date>-->
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            <item>
        <title>Series: Behe, Lenski and the “Edge” of Evolution</title>
        <link>http://biologos.org/blog/series/behe&#45;lenski&#45;and&#45;the&#45;edge&#45;of&#45;evolution?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/behe&#45;lenski&#45;and&#45;the&#45;edge&#45;of&#45;evolution?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In this series, we reexamine the claim made by Intelligent Design proponent Michael Behe to have found a limit to “Darwinian” evolution in light of recent results from the laboratory of Richard Lenski.</description>
        <content:encoded><![CDATA[<p>In previous posts in this <a href="http://biologos.org/blog/series/behe-lenski-and-the-edge-of-evolution">series</a>, we evaluated Behe’s claimed “edge” for what evolution can (and allegedly cannot) accomplish by examining the step-by-step path that bacteria in the Long Term Evolution Experiment (LTEE) took to arrive at a mechanism for utilizing citrate under aerobic conditions. In this post, we look at the implications of these results for another of Behe’s related ideas: that of irreducible complexity.</p>
 
<h3>Behe and IC</h3>

<p>Since we have previously explored Behe’s idea of irreducible complexity in an entire <a href="http://biologos.org/blog/series/understanding-evolution-the-evolutionary-origins-of-irreducible-complexity">series</a>, we will not revisit it here in great detail. It is important, however, to reemphasize how Behe defines irreducible complexity (IC). As we noted in the first part of that series, Behe frames his ideas on IC as a counter to Darwin’s ideas of gradualism.</p>

<p>For Behe, the argument for IC is a critique of gradual evolutionary processes, of the kind that Darwin saw as necessary for his theory to hold. When Behe introduces and defines IC in his book <em>Darwin’s Black Box</em>, he has a key quote from Darwin on gradualism explicitly in view:</p>

<blockquote>Darwin knew that his theory of gradual evolution by natural selection carried a heavy burden: "If it could be demonstrated that any complex organ existed which could not possibly have been formed by numerous, successive, slight modifications, my theory would absolutely break down."<br></br>

It is safe to say the most of the scientific skepticism about Darwinism in the past century has centered on this requirement… critics of Darwin have suspected that his criterion of failure had been met. But how can we be confident? What type of biological system could not be formed by “numerous, successive, slight modifications”? <br></br>

Well, for starters, a system that is irreducibly complex. By irreducibly complex I mean a single system composed of several well-matched, interacting parts that contribute to the basic function, wherein the removal of any one of the parts causes the system to effectively cease functioning. An irreducibly complex system cannot be produced directly (that is, by continuously improving the initial function, which continues to work by the same mechanism) by slight, successive modifications of a precursor system, because any precursor to an irreducibly complex system that is missing a part is by definition nonfunctional. An irreducibly complex biological system, if there is such a thing, would be a powerful challenge to Darwinian evolution.<br></br>(<em>Darwin’s Black Box</em>, p. 39) </blockquote>

<p>The definition of an IC system is thus straightforward: it is a matched group of components, where all the components are necessary for the function of the system. The necessity of each component can be demonstrated by attempting to remove it – if the system no longer works if even one component is removed, it is by definition IC.</p>


<h3>Behe and exaptation</h3> 
 
<p>The standard response to Behe’s argument from IC is to discuss the evolutionary concept of exaptation: that new systems and functions are cobbled together from components that have functional roles in other systems already present in the cell. Behe discusses, and ultimately dismisses this idea in <em>Darwin’s Black Box</em> as follows: </p>

<blockquote>In Chapter 2 I noted that one couldn’t take specialized parts of other complex systems (such as the spring from a grandfather clock) and use them directly as specialized parts of a second irreducible system (like a mousetrap) unless the parts were first extensively modified. Analogous parts playing roles in other systems cannot relieve the irreducible complexity of a new system; the focus simply shifts from “making” the components to “modifying” them. In either case, there is no new function unless an intelligent agent guides the setup.
</blockquote>

<p>So for Behe, two points are clear: parts selected for function in one system cannot be exapted for use in other systems since they would require too many modifications; and the emergence of a new function is the indication that an intelligent agent is guiding the process. </p>

<p>Behe has <a href="http://www.evolutionnews.org/2012/11/rose-colored_gl066361.html">responded</a> to my previous posts to claim that the tandem duplication event that brought about the Cit+ actualization event should not be considered a gain-of-FCT mutation under his criteria:</p> 

<blockquote>The gene duplication which brought an oxygen-tolerant promoter near to the citT gene did not make any new functional element. Rather, it simply duplicated existing features. The two FCTs comprising the oxygen tolerant citrate transporter locus -- the promoter and the gene -- were functional before the duplication and functional after. I had written in my review that one type of mutation that could be categorized as a gain-of-FCT was gene duplication with subsequent sequence modification, to allow the gene to specialize in some task. Venema thinks the mutation observed by Lenski is such an event. He has overlooked the fact that there was no subsequent sequence modification; a segment of DNA simply tandemly duplicated, bringing together two pre-existing FCTs.</blockquote>

<p>As an aside, quibbling over whether this mutation constitutes a “genuine gain-of-FCT” mutation is not my purpose here, since the definition is Behe’s to define, and I am not aware of anyone else in the scientific literature who uses Behe’s definitions.  That said, I consider it passing strange to claim that a series of events that produced a gene that has a new sequence and functional properties distinct from either of its component parts does not constitute the production of a new “functional coded element.” If nothing else, it is a functional coded element that has not previously existed, cobbled together from parts of other functional coded elements, displaying new, adaptive properties. If according to Behe’s definition that’s not “new” or a “gain” then I guess it’s not, but that seems to me to torture the words “new” and “gain” beyond recognition. But I digress.</p>

<p>The important point for our purposes, however, lies elsewhere. Note carefully how Behe describes the Cit+ actualization event. By dividing the new aerobic citrate transporter gene into two previously existing FCTs, Behe is describing an exaptation event. The one FCT (the aerobic promoter) starts off as a necessary component of a gene transcribed when oxygen is present. As such it is under selection for that function, which has nothing to do with expressing a citrate transporter. The second FCT (the citrate transporter amino acid coding sequence) is under selection to be a citrate transporter, which has nothing to do with the function of the gene the promoter comes from. The Cit+ actualization event, then, exapts these two FCTs by placing them together to create a new function (which Behe does not mention). </p>

<p>And here’s the kicker: the new system (expression of the citrate transporter when oxygen is present) requires both FCTs in order to work. It has become a system of “well matched, interacting parts that contribute to the basic function” (i.e. transporting citrate in the presence of oxygen) “wherein the removal of any one of the parts causes the system to effectively cease functioning.” </p>

<p>In other words, it is a new IC system – a small and relatively simple system, yes, but nonetheless IC. Now, I’m fairly sure that Behe would not define this system as IC, since the documentation of an IC system evolving would seriously undermine his thesis. I am interested, however, in how he will handle this development, on two fronts. First, he would need to explain specifically why two exapted FCTs that are required together for a basic function does not constitute an IC system (if indeed he wishes to preserve his definition). Secondly, given that he allows for exaptation in this case, he needs to explain how exaptation is not a threat to IC in general. In <em>Darwin’s Black Box</em> he disallows exaptation altogether, but that option is no longer on the table. </p>

<p>In the next post in this series, we’ll continue to explore the evidence for exaptation  as a means to build new FCTs, and go on to examine the implications of this evidence for Douglas Axe’s proposed limit to evolutionary mechanisms.</p> 

<h3>For further reading:</h3>
 
<p>Blount, Z.D., Barrick, J.E., Davidson, C.J. and Lenski, R.E. (2012). Genomic analysis of a key innovation in an experimental Escherichia coli population. <em>Nature</em> 489; 513- 518.</p> 
<p>Michael J. Behe, <em>Darwin’s Black Box: The Search for the Limits of Darwinism</em> (New York: Free Press, 2006).</p>
<p>Michael J. Behe, <em>The Edge of Evolution: The Search for the Limits of Darwinism</em> (New York: Free Press, 2007).</p>
<p>Michael J. Behe (2010). Experimental evolution, loss-of-function mutations, and “The first rule of adaptive evolution”. <em>The Quarterly Review of Biology</em> 85(4); 419-445. </p>]]></content:encoded>
        <pubDate>Thu, 29 Nov 12 08:04:11 -0800</pubDate>
        <dc:creator>Dennis Venema</dc:creator>
        <!--<dc:date>Nov 29, 2012 08:04</dc:date>-->
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            <item>
        <title>Series: “And God Saw That It Was Good”: Death and Pain in the Created Order</title>
        <link>http://biologos.org/blog/series/death&#45;and&#45;pain&#45;in&#45;the&#45;created&#45;order?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/death&#45;and&#45;pain&#45;in&#45;the&#45;created&#45;order?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>The tension generated by our understanding of God’s character, as revealed in the Bible, and by the reality of the natural world around us has been the focus of much debate within the Christian church since the first century. This series examines critically several of the proposed solutions to this problem, viewing them from the perspective of a geologist, paleontologist, and orthodox evangelical Christian.</description>
        <content:encoded><![CDATA[<h3>To Mrs. Professor in Defense of My Cat’s Honor and Not Only</h3>

<p><em>My valiant helper, a small-sized tiger <br />
Sleeps sweetly on my desk, by the computer,<br />
Unaware that you insult his tribe.<br /><br />

Cats play with a mouse or with a half-dead mole.<br />
You are wrong, though: it’s not out of cruelty.<br />
They simply like a thing that moves.<br /><br />

For, after all, we know that only consciousness<br />
Can for a moment move into the Other, <br />
Empathize with the pain and panic of a mouse.<br /><br />

And such as cats are, all of Nature is. <br />
Indifferent, alas, to the good and the evil. <br />
Quite a problem for us, I am afraid.<br /><br />

Natural history has its museums, <br />
But why should our children learn about monsters,<br />
An earth of snakes and reptiles for millions of years?<br /><br />

Nature devouring, nature devoured, <br />
Butchery day and night smoking with blood. <br />
And who created it? Was it the good Lord?<br /><br />

Yes, undoubtedly, they are innocent, <br />
Spiders, mantises, sharks, pythons. <br />
We are the only ones who say: cruelty.<br /><br />

Our consciousness and our conscience <br />
Alone in the pale anthill of galaxies <br />
Put their hope in a humane God.<br /><br />

Who cannot but feel and think, <br />
Who is kindred to us by his warmth and movement, <br />
For we are, as he told us, similar to Him.<br /><br />

Yet if it is so, then He takes pity <br />
On every mauled mouse, every wounded bird. <br />
Then the universe for him is like a Crucifixion.<br /><br />

Such is the outcome of your attack on the cat:<br />
A theological, Augustinian grimace, <br />
Which makes difficult our walking on this earth.</em></p>

<p>–Czeslaw Milosz,<sup>1</sup>  translated by the author and Robert Hass</p>

<h3>The Problem</h3>

<p>The poem above communicates in a very poignant and profound way the essence of the theological problem of death, pain, and suffering in the natural world—what has been referred to as “natural evil.” As we will see, it may also point to at least one aspect of a Christian response.</p>

<p>I have become convinced that one of the fundamental issues underlying much of the resistance of many Christians to an ancient, evolving creation is that of the problem of “natural evil.” “Natural evil” is also very often a primary focus of those who reject a personal and compassionate God, as it was for Darwin himself. The issue of theodicy thus seems not only to drive many people of Christian faith away from an acceptance of the conclusions of modern science, but also to drive members of the scientific community away from a serious consideration of the claims of the Christian faith. The topic is important, then not because its solution is central to the validity of the Christian faith, but because it often serves as an unnecessary stumbling block to a productive engagement of both science and faith.</p>

<p>The tension generated by our understanding of God’s character, as revealed in the Bible, and by the reality of the natural world around us has been the focus of much theological and philosophical debate within the Christian church since the first century. This article sets out to examine critically several of the proposed solutions to this problem, viewing them from the perspective of a geologist, paleontologist, and orthodox evangelical Christian.</p>

<p>The theological problem of death and pain emerges from the following propositional statements:</p> 

<ol><li>Scripture consistently declares the absolute goodness of God and the very goodness of his creation. Furthermore, Scripture declares God’s love and care for creation, and the glory and praise it returns to him.</li>

<li>Scripture also confesses a transcendent God who is omnipotent in power, yet immanent in creation as well. God’s creative activity is not described as being confined to some past event at the beginning of time, but as a present and continuing reality. God upholds creation in its being from moment to moment, and is creatively active in its history. This understanding of God’s relationship to creation has been well articulated by Jürgen Moltmann.<sup>2</sup></li>

<li>In seeming conflict with these confessions of God’s character, we observe death, pain, and suffering as ubiquitous, even integral, aspects of the creation around us.</li></ol>

<p>The apparent conflict between God’s goodness and the presence of pain and suffering is made especially acute when we consider the nonhuman creation.<sup>3</sup> How can we accommodate the death and suffering of animals within a theology that declares both God’s omnipotence and goodness? C. S. Lewis forcefully puts the issue before us in his book <em>The Problem of Pain</em>:</p>

<blockquote>The problem of animal suffering is appalling; not because the animals are so numerous ... but because the Christian explanation of human pain cannot be extended to animal pain. So far as we know beasts are incapable either of sin or virtue: therefore they can neither deserve pain nor be improved by it.<sup>4</sup></blockquote>

<p>Because the issue of animal pain so directly impacts our understanding of the goodness of creation, I will focus particularly on solutions to the problem as posed by Lewis.</p>

<p>How do we then reconcile the goodness of God who is immanent and active in his creation with the death, pain, and suffering we see embedded within it? There seem to be two basic alternative approaches to this dilemma.<sup>5</sup></p> 

<ol><li>Natural evil can be attributed to something independent of God and acting against his will. This position threatens to limit God’s power and freedom.</li>

<li>Natural evil can be considered a part of God’s good purpose for creation, and either directly willed or permitted by him. Such a view would seem to bring into question God’s goodness and love for his creatures.</li></ol>
 
<p>The tension between these alternatives—and efforts to avoid their negative theological consequences—surface in many of the proposed solutions to this problem.</p>

<p class="intro">In part 2, we start to look at some of the proposed solutions, beginning with the idea that a perfect creation was corrupted by a fall.</p>

<h3>Notes</h3>

<p class="date">1. This poem was included in a collection of poems that was one of two works by Czeslaw Milosz mentioned in a review article by Michael Ignatieff, “The Art of Witness,” <em>New York Review of Books</em> (March 23, 1995). I thank Carol Regehr for bringing my attention to this work.<br />
2. Moltmann refers to this aspect of God’s creative activity in history as “continuous creation.” Jürgen Moltmann, <em>God in Creation</em> (Minneapolis, MN: Fortress Press, 1993), 206–14.<br />
3. I will not address here arguments concerning the degree to which animals experience pain. This issue is considered by Robert Wennberg in “Animal Suffering and the Problem of Evil,” <em>Christian Scholar’s Review</em> 21 (1991): 120–40. It is obvious to me that, for many animals at least, pain and suffering are a very real conscious experience.<br />
4. C. S. Lewis, <em>The Problem of Pain</em> (New York: Macmillan Publishing, 1962), 129.<br />
5. As stated by John Hick, in <em>Evil and the God of Love</em>, rev. ed. (New York: HarperCollins Publishers, 1977): “For every position that maintains the perfect goodness of God is bound either to let go the absolute divine power and freedom, or else to hold that evil exists ultimately within God’s good purpose” (pp. 149–50).</p>
]]></content:encoded>
        <pubDate>Sat, 24 Nov 12 06:00:30 -0800</pubDate>
        <dc:creator>Keith Miller</dc:creator>
        <!--<dc:date>Nov 24, 2012 06:00</dc:date>-->
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        <title>Katharine Hayhoe: Evangelical Christian, Climate Scientist</title>
        <link>http://biologos.org/blog/kathryn&#45;hayhoe&#45;evangelical&#45;christians&#45;climate&#45;scientist?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/kathryn&#45;hayhoe&#45;evangelical&#45;christians&#45;climate&#45;scientist?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>As an Evangelical and a scientist, Katharine Hayhoe is already a member of a rare breed.  As a climate change researcher who is also married to an evangelical Christian pastor, she is nearly one of a kind.</description>
        <content:encoded><![CDATA[<p>As an evangelical scientist, Katharine Hayhoe is already a member of a rare breed.  As a climate change researcher who is also married to an evangelical Christian pastor, she is nearly one of a kind.  In these three videos, Hayhoe divulges her beliefs about God, climate change, and the difficulties of believing in both those things.</p>

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<p>The first video, “10 Questions with Katherine Hayhoe”, introduces the scientist in a brief and lighthearted interview.  Hayhoe is presented with 10 questions concerning her personal life and beliefs.  When asked, she explains that one thing people should know about Christianity is that having a relationship with the God of the universe is one of the most incredible experiences that a person can have. As the video unfolds, the viewer quickly begins to realize that, despite her unique profession of two seemingly incompatible beliefs, Hayhoe is a remarkably sane and “normal” individual.  Her role model, she explains, is her father-- the person who first introduced her to science and showed her that it could be “really cool”.  On a more serious note, the scientist admits that being both a scientist and a Christian can be difficult.  The most frustrating thing about her position, she says, is the amount of disinformation which is targeted at her very own Christian community.</p>
 
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<p>In the second video, “Climate Change Evangelist”, Katharine Hayhoe delves into deeper discussion of the perceived conflict between climate change and Christian faith.  She explains that admitting her identity as a Christian scientist can be uncomfortable.  Since evangelicals are the targets of much disinformation concerning science in general -- and specifically the science surrounding climate change -- many people in the church have a misguided view of the subject and do not look kindly at her career choice.  One woman encountered by Hayhoe at a church in Texas, for example, believed that global warming was a lie taught in schools to mislead her children.  In an effort to realign misguided views like these, Katharine Hayhoe and her husband wrote a book addressing the deep-rooted emotions often associated with climate change.  People fear that addressing the climate issue will bring forth changes in the economy and uproot their way of life.  However, Hayhoe encourages her viewers to act out of love, as the Bible calls us to do, rather than out of fear.  Acting out of love inspires us to consider the poor and disadvantaged people around the globe when we respond to the reality of a changing climate.</p>

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<p>In the final segment of this three part video montage, Hayhoe addresses the question of what climate change means. Specifically, she is concerned about how global warming affects people on a personal level.  While global warming generally brings to mind melting ice caps and polar bears, its implications are far more widespread, affecting the lives of everyone around the world- from cotton farmers in Texas to public health workers in Chicago.  If nothing is done to change current emission levels, the number of days per year which exceed 100 degrees Fahrenheit, for example, will begin to increase dramatically, and if emissions are increased, many areas will even develop extreme conditions like those seen currently in Death Valley.  Hayhoe’s goal is to demonstrate clearly that the only way to preserve the world for future generations is to significantly reduce dependence on inefficient means of getting energy and instead transition to cleaner renewable energy sources.</p>

<p><strong>Editor's Note: These videos first appeared on the Nova program <a href="http://www.pbs.org/wgbh/nova/secretlife/scientists/katharine-hayhoe/" target="_blank">"The Secret Life of Scientists & Engineers"</a>.</strong></p>]]></content:encoded>
        <pubDate>Fri, 09 Nov 12 05:00:21 -0800</pubDate>
        <dc:creator>Katharine Hayhoe</dc:creator>
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        <title>What I Would Like To Hear A Young&#45;Earth Creationist Say</title>
        <link>http://biologos.org/blog/what&#45;i&#45;would&#45;like&#45;to&#45;hear&#45;a&#45;young&#45;earth&#45;creationist&#45;say?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/what&#45;i&#45;would&#45;like&#45;to&#45;hear&#45;a&#45;young&#45;earth&#45;creationist&#45;say?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>It may come as a surprise that when asked by The Colossian Forum what one thing he would like to hear Young Earth Creationists say, his answer had nothing to do with scientific statements at all. Rather, his hope is to hear a single simple phrase: “We’re both part of the same family.”</description>
        <content:encoded><![CDATA[<p>As The BioLogos Foundation’s Senior Fellow of Biology, Dr. Dennis Venema is no stranger to the many arguments against and misconceptions about evolutionary theory. In fact many of his over 40 posts for The BioLogos Forum deal with clarifying wrong assumptions about evolution, including the evidence for common descent in our genes, and the mechanisms of speciation. So it may come as a surprise that when asked by The Colossian Forum what one thing he would like to hear Young Earth Creationists say, his answer had nothing to do with scientific statements at all. Rather, his hope is to hear a single simple phrase: “We’re both part of the same family.” </p>

<p>As a scientist at a Christian university, Dr. Venema has experienced first-hand the breakdown of fellowship that can happen over disagreements about creation. Sometimes it can be a large falling out, but other times it can be as simple as a look-- when Christian brothers or sisters appear incredulous upon learning that your views about origins differ from theirs, as if they’re reassessing your place in the family of God.</p>

<p>Dr. Venema notes this breakdown can come from both sides: from YECs who view those who accept evolution as “compromisers” and “wolves in sheep’s clothing” as well as from ECs who view those hold YEC beliefs as “ignorant” or “fundamentalists”.</p>

<p>That’s not to say that science-and-faith discussions aren’t important. As Dr. Venema puts it:</p>

<blockquote>Is it an important issue for Christians to discuss? Yes. Does the issue serve as a catalyst for a wide-ranging discussion on exegesis and hermeneutics? Certainly, and that in and of itself can be very healthy. Is it acceptable for believers to hold either opinion and be within the people of God? I would say yes. It is my conviction that the mechanism by which God created is an issue of secondary importance compared to the underlying primary issue of holding God as the Creator and sustainer of all things. As a secondary issue, then, the only danger is making one of the options an essential, and dividing over it. Is it a problem if my brother or sister at church is a YEC? No. Is it a problem if I won’t share fellowship with them because of their views? Absolutely. Our difference of opinion on the mechanism of creation is not a gospel issue, but breaking fellowship over a secondary matter is a gospel issue. It hinders the love and fellowship that we are called to be known for, and raises an unnecessary barrier to those who would consider joining us.</blockquote>

<p>You can read his full response at <a href="http://www.colossianforum.org/2012/10/16/article-what-i-would-like-to-hear-a-young-earth-creationist-say/">The Colossian Forum</a>.</p>

<h3>What is the Colossian Forum?</h3>
<p>Based in Grand Rapids, Michigan, the Colossian Forum's mission is to make concrete the unity all Christians have in Jesus--particularly in the science and faith conversation. Through retreats, a website, curricula, and scholarly research, the Forum seeks to promote growth, transformation, and unity in Christ. In their own words, "they aim make a new way forward together" by bringing people into "serious discussion of the deep riches of our Christian intellectual tradition—riches that shed light on the hard questions of science, culture and Christian faith.”</p>
]]></content:encoded>
        <pubDate>Sat, 20 Oct 12 08:00:04 -0700</pubDate>
        <dc:creator>Dennis Venema</dc:creator>
        <!--<dc:date>Oct 20, 2012 08:00</dc:date>-->
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