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        <title>Custom Feed &#45; The BioLogos Forum</title>
    <link>http://biologos.org/resources/find/any/Neuroscience &amp; Psychology,Young Earth Creationism,Science Teachers/sort&#45;by&#45;Newest?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
    <description>This is a custom feed of BioLogos resources. Make a new feed at http://biologos.org/resources/find</description>
    <dc:language>en</dc:language>
    <dc:rights>Copyright 2013</dc:rights>
    <dc:date>2013-05-22T05:16:48-08:00</dc:date>    
    
    

            
            
        
      <item>
        <title>Series: Understanding Randomness</title>
        <link>http://biologos.org/blog/series/immunity&#45;and&#45;evolution&#45;the&#45;same&#45;story?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/immunity&#45;and&#45;evolution&#45;the&#45;same&#45;story?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In this series, Kathryn Applegate addresses the concern that randomness implies the absence of God&apos;s activity and involvement in the natural world.  She begins by clearing up some common misconceptions about the concept of &quot;randomness&quot;, and later focuses on the mechanisms of the immune system to demonstrate that God works through random processes to preserve life.  Far from being an indication of a &quot;godless&quot; universe, one might conclude that randomness is one of God’s favorite mechanisms for creating and sustaining life!</description>
        <content:encoded><![CDATA[<p>You hear it all the time: “That’s so random!” When used by people of my generation, the word “random” can simply mean “cool” or “surprising.” Or it can mean something like “disconnected,” as in the phrase, “I had a random thought” (which returns 189,000 hits on Google, by the way—random!).</p>

<p>Despite this usage, most of us know that randomness has something to do with probability, and that it often implies a lack of conscious intentionality. But what do mathematicians and scientists mean when they say something is random? Can a random process lead to an ordered, even predictable outcome? Is there evidence that God makes use of random processes to fulfill his creative purposes?</p>

<p>These are big questions, and we won’t address them all today. But I think randomness is an important topic to cover for two reasons: 1) it is integral to many processes in biology (and math, physics, chemistry, etc.), and 2) it is commonly misunderstood to be incompatible with Christianity.</p>

<p>As I said above, most of us know that randomness has something to do with probability. If you pick a card “at random” from a shuffled deck, you have a small probability of drawing an ace (4 out of 52, or a 7.7% chance). If you flip a coin, you have an equal probability of getting heads or tails.</p>

<p>Randomness also seems to imply a lack of intentionality or purposefulness. After all, you might hope for an ace when you draw a card, but you can’t choose one on purpose. You might call heads when you flip a coin, but you can’t know beforehand what the outcome will be. Thus the outcome is <em>indeterminate</em>, but is it purposeless? Not necessarily. Indeterminacy simply means the result cannot be predicted from the outset.</p>

<p>It should be noted that indeterminacy does not imply that God does not have foreknowledge of future events. Christians ought not to be uncomfortable with the idea of God interacting with his creation through chance. We often describe a seemingly-random (i.e. unplanned by us) sequence of events as being “providential,” or planned by God.</p>

<p>In biology, it is very hard or impossible to calculate precise probabilities for most processes, so when we say a process is random, we typically mean it is extremely unpredictable. Eventually we will discuss randomness within biological evolution, but first we must consider some simpler processes, like the self-assembly of a virus.</p>

<p>Viruses are remarkably efficient entities. Coiled tightly within a protein-based shell is a small amount of DNA needed for self-replication. The shell, called a capsid, is made of many repeating protein subunits and is therefore highly symmetrical (see figure). Important biomedical insights have certainly been gleaned from structural studies of viruses, but viruses also teach us about the emergence of order from non-order.</p>

<p>The virus life cycle has four main steps: 1) enter a host cell, 2) hijack the cell’s replication and translation machinery to make many copies of itself, 3) assemble into many virus particles, and 4) exit the cell to invade another host.</p>

<p>When I first learned about this process, I found it very hard to believe it just “happens.” The idea that a bunch of molecules bumping into each other inside a crowded cell could spontaneously assembly into a fully-functional virus seemed a bit far-fetched. Many viral capsids have over 100 protein subunits that must interact with each other in just the right way, or it won’t work. Surely there must be something driving this process, right?</p>

<p>There is! Random motion. I had to see it to believe it. I distinctly remember sitting in class during my first year of graduate school when the professor demonstrated self-assembly of a virus using a 3D <a href="http://models.scripps.edu/" target="_blank">model</a> as shown in the following video. In less than 30 seconds, you can watch a jumbled heap of proteins become a beautifully ordered structure.</p>

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<p>As the narrator explains, sub-assemblies form and break apart en route to the most stable structure, the full capsid. As the sub-assemblies begin to form, further associations with free subunits become more favorable and as a result occur rapidly, while the final steps may take considerably longer. While the subunits in the model are rigid, in reality the proteins take on multiple conformations, allowing the capsid to “breathe.”</p>

<p>Amazing as it is, the system we just considered—one virus capsid in a jar—is pretty simple. One wonders how self-assembly can happen in a crowded cell, where there are countless other molecules diffusing around, potentially getting in the way. We can’t directly <em>see</em> how it happens in a cell, but we can reconstitute the process in a test tube using different combinations of constituent molecules.</p>

<p>Consider two viruses, where each protein subunit in one virus is the mirror image of the corresponding subunit in the other. Putting the two viruses together by hand would be pretty tricky, because the constituent parts look so similar. But random motion can do the job in short order:</p>

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<p>From this model, we can see clearly, in real-time, how distinct complex structures can arise from their parts randomly interacting with one another. Many large viruses also use special scaffolding proteins to assist in the assembly process, and some even use their own genomes as a scaffold. In addition, two closely-related viruses that happen to infect the same cell can exchange parts to create a new virus. This is one way viruses can evolve quickly to evade the host’s immune system.</p>

<p>Here we have seen how viruses demonstrate a principle inherent in God’s world—that order can emerge out of chaos from random processes. In my next post, we will look at some other biological processes that make use of—rather, depend on—randomness. This will set the stage for us to see that such processes can not only assemble a structure within seconds or minutes, but also generate complex, information-bearing molecules over billions of years. Even though the freedom inherent in nature sometimes produces <em>un</em>intelligently-designed structures (like viruses, which can kill us), we see that God has made, and continues to oversee by his providence, a <em>good</em> creation that, at least in part, is capable of creating itself.</p>

<p class="intro">Next weekend, we’ll continue this series about randomness and God’s divine will. Up next: how God created the body to heal itself, and how can random mutations can be both harmful and benign.</p>]]></content:encoded>
        <pubDate>Sat, 23 Mar 13 06:00:44 -0700</pubDate>
        <dc:creator>Kathryn Applegate</dc:creator>
        <!--<dc:date>Mar 23, 2013 06:00</dc:date>-->
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        <title>A Plea to My Shepherds</title>
        <link>http://biologos.org/blog/a&#45;plea&#45;to&#45;my&#45;shepherds?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/a&#45;plea&#45;to&#45;my&#45;shepherds?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>... I would exhort these, my fellow conservative evangelical shepherds and thinkers, to set aside all reticence and fear, emerge from anonymity, and storm the forum of discourse, engaging this most pressing matter with vigor, equanimity, and humility. In doing so, know upfront that there will be few handrails to guide; you will not be building upon an extensive precedence of published conservative thought.</description>
        <content:encoded><![CDATA[<p>As I mentioned in my <a href="http://biologos.org/blog/scripture-vs-the-facts-working-through-a-crisis-of-understanding/">last post</a>, I’m deeply troubled by my fellow conservative evangelicals’ skepticism – even hostility – towards much of modern science, and believe that barring change, this disposition will prove spiritually catastrophic to our children and grandchildren, who are today being taught that assertions of an ancient universe and macro-evolution are unequivocally incompatible with the Cross of Christ, and tomorrow will enroll in universities that powerfully demonstrate the integrity of these scientific claims, thereby setting the stage for devastating crises of faith for countless thousands of young believers.</p>

<p>That said, I genuinely empathize with those who are reluctant to abandon traditional theological concepts for newer, still- developing ones. Given spiritual leaders’ biblical mandate to protect their families and congregations against error, a responsibility for which God will hold them strictly accountable (James 3:1), I respect their refusal to expose their flock to ideologies they regard as conflicting with the Word of God.</p>

<p>I further understand pastors and theologians’ resistance to tethering theology—which is meant to provide a solid epistemological foundation—too closely to that intrinsically dynamic endeavor called science. All humans need ideological stability, perhaps especially so with respect to spiritual matters. Recognizing this, pastors rightly ask why they should abandon or substantially revise an internally-consistent systematic theology that has served the church with relative stability for many hundreds of years. Science, on the other hand, is a realm for adventurers, groundbreakers, and ideological athletes intent on not just polishing or expanding today’s body of knowledge, but shattering it when necessary. Resounding with the jousts and clashes of competing ideas and arguments, and the stunning reversals of ideas once widely held, science often appears to be a messy–even tumultuous–business. Spiritual shepherds are insistent that the epistemological dynamism that necessarily characterizes science never become the mainstay of the Christian experience, which must be fundamentally stable and dependable. They see wisdom in maintaining a safe distance between the Church and the choppy waters of science.</p>

<p>The question, then, is whether the waters of scientific thought, particularly with respect to the age of the earth and evolution, have sufficiently smoothed out to warrant conservative thinkers’ taking a deeper look. Of course, the catch-22 here is that this can’t be answered without actually embarking upon an expedition of exploration and investigation, much as I recently did. Once undertaken, however, the conservative explorer will likely be confronted by a formidable problem:</p>

<p>As I can personally attest, navigating the crowded forum of wildly-differing ideas as to how to resolve the faith-science divide can be terribly daunting. Making this especially disconcerting for the conservative is the sobering reality that amidst the chorus of conflicting theories, one finds very little <em>substantive</em> published input from respected conservative theologians. As a result, the conservative seeker is sure to find herself awash in an ocean of seemingly novel theological “solutions” that are fundamentally antithetical to her evangelical sensibilities. This is likely to result in the impression that there is in fact no way to reconcile the findings of modern science with the key doctrines of orthodox Christianity, and hence the termination of the endeavor. Not only was this dynamic a constant challenge to me, but has proved a stumbling block to many would-be seekers that I personally know.</p>

<p>Whence then change? I believe the breakthrough will begin with a particular subgroup of conservative evangelical pastors, elders, and theologians. I know firsthand that there are many who, truth be told, have not been entirely at peace with their fellow conservatives’ summary rejection of—and apologias against—the findings of mainstream science. They have a gnawing sense that devastation looms for the Church and her children unless detachment yields to engagement, and rhetoric to substance. These have likely admitted to themselves that despite stridently asserting anti-evolution/old-earth views, they actually don’t understand these views in depth (nearly every conservative pastor and elder I’ve spoken with has conceded this). To date, these shepherds and thinkers have remained silent about their misgivings, reluctant to be perceived by their congregations and peers as betraying true Christianity. Given the astonishing fruitfulness of modern science and the comparative barrenness of young-earth creationism, I believe these evangelical leaders may now finally regard themselves as justified in stepping forward and publicly questioning whether the latter is in fact the view that a truth-revealing God would have His people believe.</p>

<p>Indeed, if I may, I would exhort these, my fellow conservative evangelical shepherds and thinkers, to set aside all reticence and fear, emerge from anonymity, and storm the forum of discourse, engaging this most pressing matter with vigor, equanimity, and humility. In doing so, know upfront that there will be few handrails to guide; you will not be building upon an extensive precedence of published conservative thought. Rather, you will be pioneers, with the open prairie of contemplation and consideration before you and the Word of God as a faithful, orienting star. The journey will be at times confounding, often scary, and never without challenge. Yet only through such robust, self-critical analysis will you find yourself in a posture where God can correct and refine all that He would, and only after which will you be able to pass on to your flocks a cogent, truly harmonious portrait of our Lord and His Creation that finds rich consistency between His written and natural revelations. I firmly believe that the fuller, more deeply informed portrait of the Lord and His universe that emerges from this investigation will fill your congregations with an unprecedented new sense of awe at our beloved God as Creator, and profoundly enhance their worship of Him. This has certainly been the result of my own journey.</p>
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        <pubDate>Wed, 27 Feb 13 04:00:32 -0800</pubDate>
        <dc:creator>Stephen Blake</dc:creator>
        <!--<dc:date>Feb 27, 2013 04:00</dc:date>-->
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        <title>Denis Alexander on Understanding Creation Theology</title>
        <link>http://biologos.org/blog/denis&#45;alexander&#45;on&#45;the&#45;barriers&#45;to&#45;traditional&#45;creation&#45;theology?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/denis&#45;alexander&#45;on&#45;the&#45;barriers&#45;to&#45;traditional&#45;creation&#45;theology?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In this video Conversation, Denis Alexander asserts that contemporary Christians are not taking the early chapters of Genesis seriously enough.</description>
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<p>In this video Conversation, Denis Alexander addresses two prominent barriers for Christians to accept evolutionary creation. The first is Biblical interpretation. When contemporary Christians interpret the early chapters of Genesis literally, they do so out of a desire to take the text seriously. Yet the early church fathers saw these chapters as figurative—and that figurative interpretation did not lesson the important foundational truths taught in these passages. The contemporary literal reading is actually a modern approach to the text in that our scientific mindset inappropriately shapes the interpretation. Since science did not even exist at the time that Genesis was written, an overly literal interpretation can actually cause us to miss the inspired message that the Biblical authors were communicating.</p>

<p><span style="line-height: 1.3em;">The second barrier is the rhetoric of the New Atheists, who claim that it is impossible to accept evolution while still believing in God. Christians should challenge this. Traditional Christian views are not in conflict with modern science. Instead, they see nature as God's work, with St. Augustine writing that "nature is what God does." As humanity develops a scientific understanding of nature, we will only learn more about the handiwork of God.&nbsp;</span></p>
]]></content:encoded>
        <pubDate>Fri, 15 Feb 13 07:00:14 -0800</pubDate>
        <dc:creator>Denis Alexander</dc:creator>
        <!--<dc:date>Feb 15, 2013 07:00</dc:date>-->
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            <item>
        <title>A Faith Journey in a Medical Science Career, Part 1</title>
        <link>http://biologos.org/blog/a&#45;faith&#45;journey&#45;in&#45;a&#45;medical&#45;science&#45;career&#45;part&#45;1?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/a&#45;faith&#45;journey&#45;in&#45;a&#45;medical&#45;science&#45;career&#45;part&#45;1?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In particular, I was interested in pursuing a career in paleontology or ecology, and I became even more convinced in college, that I had to make a profound choice  – either I chose a career in science and reject YEC claims that had no basis in reality, or I would have to abandon a science career all together.</description>
        <content:encoded><![CDATA[<blockquote>Hearken unto this, O Job: Stand still and consider the wondrous works of God. <strong>(Job 37:14)</strong></blockquote>

<p>The majority of health care workers deal with the confusing issues of life, death, and the apparent random tragedy of disease that can devastate families emotionally, financially, and spiritually. In fact, when I separate myself from the sterile aspects of a lab test review or ordering of radiographic images, I often find myself extremely saddened by the reality that children suffer from chronic disease, and in that aspect, I have found my faith to be a salve for me. I have been involved in the field of medicine for a relatively short time, only 21 years since first starting medical school. I marvel daily about the advancements of this tool that we have named “modern medicine”. Indeed, in the past 20 years alone, the progress we have made in the diagnosis and treatment of cancer, cardiovascular disease, and infectious disease has been seemingly unstoppable. Despite these advances, we have not adequately addressed how we handle various aspects of suffering (physically, spiritually, and mentally) in long-term hospitalized patients, in patients with chronic disease, and in the elderly.</p>

<p>I have often been asked if my faith has been affected by being exposed to illness and death. I would resoundingly say “No”, but I know health care workers run the entire gamut of a belief in God. There was a time when I would have said otherwise; however, my lay interest in the processes of our Earth (biologic and geologic) has convinced me of a Creator. I am a Christian, and this essay will discuss how I use my scientific and medical background to justify my faith. If you are an atheist reading this essay, you will have realized that you and I have belief differences from the beginning of this writing. If you are an evangelical Christian, I want you to realize that I am not going to talk about my conversion or my baptism. That aspect of my life is not the point of my essay, but you should know, for background, that I do accept Jesus Christ as my Savior.</p>

<p>I was born and raised in central Texas where a large percentage of the population is evangelical Christian. As I progressed through public education, I had convinced myself that I was agnostic. This was a personal decision, not based on any family influence. In fact, I had Christian parents who were educators and who had an interest in my pursuing a science career as a way of opening my mind to the needs of humanity and intellectual fulfillment. However, my trail away from my Christian faith lasted about 15 years and was most influenced by many of my evangelical classmates, especially in high school and college. I was exposed to Young Earth Creationism (YEC) by many friends, and at that time, I did not think it was even possible to reconcile a Christian faith with my interest in science.</p>

<p>In particular, I was interested in pursuing a career in paleontology or ecology, and I became even more convinced in college, that I had to make a profound choice – either I chose a career in science and reject YEC claims that had no basis in reality, or I would have to abandon a science career all together. I was only aware of those two options at that time and was not aware of a third way leading to a reconciliation of my faith. I will admit that I was fairly angry about the absolutism provided by so many of my YEC-minded friends in the face of massive amounts of biologic and geologic data. I became angry about the concept of religion in a very self-centered sort of way. Eventually and after much contemplation, I ended up going to medical school after college as opposed to a career in natural history, as I decided that the job market was more stable in medicine.</p>

<p>Two particular events enabled me to completely reconcile my faith with science. First, I took a field research class that involved traveling through the southwest United States during the summer of my junior year of college. Seeing geologic layering and signs of erosion up close in areas such as the Grand Canyon and Bryce Canyon, as opposed to hearing about the concepts in the lecture hall, made me truly appreciate deep time (Figure 1). For example, although random events over millions of years formed beautiful geologic structuring of <a href="http://en.wikipedia.org/wiki/Hoodoos">hoodoos</a> in Bryce Canyon, the wind and rain making these amazingly beautiful sandstone columns spoke of the mechanistic properties of erosion. Seeing the effects of long-term erosion as being “beautiful” led me to wonder in my tent at night why consciousness was formed to allow humans to appreciate the majesty of nature. I was able to see the Milky Way at night as I camped in the various national parks, and I further contemplated the mechanisms of gravity, light, and star formation. I was captivated by this imposed beauty on the desert floor around me, the stark ruddy canyon walls, the conifer-filled woods, and the cloudless night with a waning moon. I kept a journal during my trip which I wrote in daily. I have read it again years later, and there are passages written, crossed out by pen, then written out again with some my first inklings that I likely believed in a Creator God.</p>

<p class="caption-center"><img alt="" height="427" src="http://biologos.org/uploads/static-content/pohl_figure_1.jpg" width="570" /><br />
Figure 1: In this picture, I am showing my daughter the various rock groups of the Grand Canyon at Grand Canyon National Park in Arizona. My visit to the canyon in college brought home to me the immensity of deep time and the beauty of a natural structure suggesting to me, in a strong way, that God must exist. When this picture was taken, I wanted my daughters to see what I saw, felt what I felt, thought what I thought, when I began to really be convinced there was a Creator.</p>

<p>The second aspect that brought me back into Christianity was exposure to a pastor in my late 20s. At this point, I was deep into my medical training as a pediatric gastroenterologist, but I was starting to attend church again, although not regularly. I also was working in a lab where we were using “knock-out” mice (mice with a gene removed to assess the resultant phenotype, or the observable traits) in order to determine the mechanisms of cirrhosis of the liver. Although my contribution to the lab was not ground-breaking, I was fascinated as to how a single gene deletion could lead to down-stream effects, including morphologic changes in the liver (i.e., cirrhosis). My research had demonstrated that specific gene mutations were leading to a diseased organ, and I came to believe that the genetic code encompassed in all living creatures was not likely explained as a random, undirected process.</p>

<p>The pastor with whom I was interacting with at that time had trained in astronomy prior to going into ministry, and it was fascinating to hear him reconcile his belief in an ancient universe with his faith. He was not the least bit worried about an ancient Earth and a far more ancient universe. He believed in a Sovereign God who could certainly provide for the mechanisms of the Big Bang and the resultant world that we live in. Over the months, my discussions with him led me back to reading my Bible daily for the first time, really, in my life. In my very humble and limited opinion, I could see that God, especially through the Gospels, provided an answer to what my purpose consisted of during my time here on Earth. I was to love and serve others as best I could, and I should let God be in control of the big stuff of life.</p>

<p>Here in the lab (and previously for me in the American southwest) there appeared to be sublime mechanisms at play in the world. Even when I looked at random processes (and I do believe that God allows randomness), the grandeur of life forms that have been present on our planet for hundreds of millions of years fascinated me. I did try to convince myself that randomness was evidence of no God, but I then decided that a Creator could certainly build randomness into any biologic or geologic system to allow for the abundance of detail that we see in the natural world around us.</p>

<p>Taken together, all of these views of the world in the micro- and macro-scale convinced me to come back to Christianity. I believe strongly that there is God who has allowed natural mechanisms to take place, random or not so random, which are exhibited throughout the universe. I certainly know that my wife, my children, and I will die someday, but a re-reading of the Gospels as well as reading the great Book of Nature around us reinforced in me that there was something more for all of us, even after death.</p>

<p>I have never regretted the re-discovery of my Christian faith. I especially take these thoughts with me, when I have to talk to families about sick or dying children. These are hard conversations to have, and I find comfort knowing that evidence of a creator God is ever present around us, even as each of us heads towards the end of life and subsequently, eternity.</p>
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        <pubDate>Tue, 12 Feb 13 07:00:35 -0800</pubDate>
        <dc:creator>John Pohl</dc:creator>
        <!--<dc:date>Feb 12, 2013 07:00</dc:date>-->
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        <title>Where are the Transitional Fossils?</title>
        <link>http://biologos.org/blog/where&#45;are&#45;the&#45;transitional&#45;fossils?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/where&#45;are&#45;the&#45;transitional&#45;fossils?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>A common argument leveled against the theory of evolution is that scientists have not been able to produce transitional fossils that show the change of one species into another.  In this podcast, we address a common misconception about what transitional fossils actually are.</description>
        <content:encoded><![CDATA[<p align="center"><iframe src="http://player.vimeo.com/video/31875051?title=0&amp;byline=0&amp;portrait=0" width="570" height="428" frameborder="0" webkitAllowFullScreen allowFullScreen></iframe></p>

<p>A common argument leveled against the theory of evolution is that scientists have not been able to produce the expected transitional fossils that show the change of one species into another. If evolution were true, wouldn’t there be instances of clear intermediary species, like, for example, a species that was half whale and half hippo to show the transition between those two? In this BioLogos podcast, Kelsey Luoma addresses this misconception about what a transitional fossil actually is. Rather than a mix between two related species, transitional fossils point back to the common ancestors that modern species share. The fact is that the number of transitional species is massive and it grows with each passing year.  Given the rarity with which organisms are actually fossilized, the amazing thing is actually the completeness of the fossil record, not its incompleteness.  The transitional species story strongly supports, and certainly does not disprove, evolutionary theory. <sup>1</sup></p>

<p class="date">1. To hear the full audio clips which have been referenced go to:</p>
<ul><li><a href="http://www.youtube.com/watch?v=X6EmOQLf25s&feature=BFa&list=PLACF41F3DDBCA4565&lf=results_video&noredirect=1" target="_blank">Rational Response Debate with Kirk Cameron (from Way of the Masters)</a></li>
<li><a href="http://www.youtube.com/watch?v=FN9wyn9xVko&feature=related" target="_blank">Behind the Scenes with Dr. Neil Shubin (from Cincinnati Museum Center)</a></li>
<li><a href="http://www.youtube.com/watch?v=fVNXXLLUYFM' target="_blank">Mark Norell Publishes New Archaeopteryx Findings (from American Museum of Natural Sciences)</a></li>
<li><a href="http://www.youtube.com/watch?v=VmtDGjfMajM" target="_blank">Texas A&M Professor Discusses Findings of Autralopithecus Sediba and its Relationship to Humans (from Texas A&M University)</a></li>
<li>Intro/outro music composed by Martin Minor (<a href="http://www.looperman.com/users/profile/159051" target="_blank">Minor2Go</a>).</li> </ul> </p>

<p><strong>An audio only version of the podcast can be downloaded <a href="http://biologos.org/uploads/resources/fossil_podcast_final.mp3" target="_blank">here</a>.</strong></p>
]]></content:encoded>
        <pubDate>Fri, 01 Feb 13 08:57:28 -0800</pubDate>
        <dc:creator>Kelsey Luoma</dc:creator>
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        <title>Worshiping, Growing, and Learning</title>
        <link>http://biologos.org/blog/worshiping&#45;growing&#45;and&#45;learning?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/worshiping&#45;growing&#45;and&#45;learning?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Yesterday, biology professors Randy Moore and Sehoya Cotner raised the concern that workshops focused on evolution&#45;related training do not reach not reach creationism&#45;based biology teachers. Today, we&apos;d like to focus on BioLogos&apos; efforts to address that divide through our Biology by the Sea workshops.</description>
        <content:encoded><![CDATA[<p>Our third annual BioLogy by the Sea teachers’ workshop was another success. Middle and high school teachers from Christian schools came from all over the United States to take part in this weeklong workshop. Last year’s group continued studying biodiversity, while this year’s group studied developmental biology.</p>

<p>Showing Christian schoolteachers that one can be a believer who embraces the Bible as God’s inspired Word and evolution as His creative process has always been a mission of BioLogy by the Sea, the accomplishment of which is never guaranteed. During the first few days, several participants expressed doubt that their faith could be compatible with evolutionary creation. However, as the week came to a close, some of those who had previously denied compatibility seemed to be much more considerate of the notion—if not fully accepting of the idea altogether. If you’ve ever doubted evolution yourself, then you know that such acceptance is no small feat. There are numerous theological and philosophical barriers that must be dealt with, and to think that this could occur in the span of just one week is pretty amazing. Then again, the program had some pretty amazing guest speakers and activities—the most significant of which occurred throughout the week: prayer and worship to the One we all serve, our Lord and Savior Jesus Christ.</p>

<p>While these times served to glorify God and nurture participants’ souls, the week was also filled with activities designed to nurture participants’ minds through the study of biblical passages and biological content. In addition to graduate level courses and accompanying labs in either biodiversity or developmental biology, participants went on field trips to the intertidal zone, the Natural History Museum of Los Angeles County, the La Brea Tar Pits, and the Gaslamp Quarter. Furthermore, presentations given by Dr. Gregg Davidson, professor of geology and geological engineering from the University of Mississippi, and Dr. Mary Schweitzer, paleontologist and associate professor of marine, earth and atmospheric sciences from North Carolina State University, offered key insights into their fields and demonstrated how the tenants of both are based on evidence rather than conjecture.</p>

<p>In short, this year’s BioLogy by the Sea offered another comprehensive look at what it means to be a Christian who accepts the conclusions of mainstream science—not at the expense of our faith in God or His Word, but in light of it. We can only hope that these teachers, who spent an entire week of their summer break with us, left with not only a greater sense of oneness as the body of Christ, but also found new ways to engage their students in matters of science and faith—another facet of the program’s mission. After all, the first step in protecting the next generation from the faith crisis that many seem to experience after they learn about evolution from a secular perspective is showing that it need not be an either-or situation. It’s also an important part of ensuring that Christian young people can rise to the forefront of global scientific research.</p>

<p class="caption-center"><iframe src="http://player.vimeo.com/video/46269101" width="500" height="281" frameborder="0" webkitAllowFullScreen mozallowfullscreen allowFullScreen></iframe></p>]]></content:encoded>
        <pubDate>Wed, 23 Jan 13 07:00:17 -0800</pubDate>
        <dc:creator></dc:creator>
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        <title>Evolution and Creationism in America’s Biology Classrooms</title>
        <link>http://biologos.org/blog/teaching&#45;evolution&#45;and&#45;creationism&#45;in&#45;americas&#45;biology&#45;classrooms?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/teaching&#45;evolution&#45;and&#45;creationism&#45;in&#45;americas&#45;biology&#45;classrooms?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>High school biology courses have a strong and lingering impact on students’ views of evolution and creationism.</description>
        <content:encoded><![CDATA[<p>Although the evolution-creationism controversy has been one of the most abiding controversies in America during the past several decades, public attitudes about evolution and creationism have changed relatively little during that time. Indeed, since 1982, Gallup has consistently reported that 40-47% of Americans endorse young-Earth creationism, 35-40% believe that humans evolved but that God guided that process, and 9-16% believe that humans evolved but that God had no role in the process (Gallup, 2011). Similarly, a Harris Poll reported, “many more people believe in miracles, angels, hell and the devil than in Darwin’s theory of evolution” (Harris Poll, 2009).</p>

<p>These facts persist in the face of educational guidelines in most states that mandate the teaching of evolution, court decisions that have declared the teaching of creationism as unconstitutional and having “no scientific merit or educational value as science [because it] is simply not science” (<em>McLean v. Arkansas Board of Education</em>, 1982), thousands of scientific papers and books that document evidence for evolution, direct observations of evolution, and countless endorsements of evolution (and rejections of creationism) by professional scientific organizations. Decades of costly science education reform have not reformed popular acceptance of evolution: most of the public continues to see religion and mainstream science as diametrically opposed, and when presented with that choice, most will choose the supernatural over science, even when it means rejecting the foundations of modern biology. Why?</p>

<p>Many factors – for example, the media and religion -- influence people’s beliefs about the evolution and creationism, as well as their acceptance of science. One of these influences is education. What are students taught about evolution and creationism?</p>


<h3>Evolution and Creationism in High School Biology Courses</h3>
<p>Students have widely variable introductions to evolution in their high school biology courses. Although most states have educational guidelines that mandate the teaching of evolution, only about 70% of students entering college report that their high school biology courses included evolution (in some form) and not creationism. Although educational guidelines provide important support for teachers wanting to teach evolution, these guidelines are irrelevant to many biology teachers and administrators. </p>

<div class="see-also">For a detailed account of how skeptical Christian college students navigate the many social and religious concerns to reconcile their faith with evolutionary creation, see <a href="http://biologos.org/blog/series/evolution-and-personal-faith-christian-university-students">Mark Winslow’s series</a>.</div>

<p>Approximately 20% of students are taught neither creationism nor evolution in their high school biology courses (Moore, 2007). Another “cautious 60%” of biology teachers want to avoid controversy, and neither advocate evolution nor explicitly endorse nonscientific alternatives (Berkman and Plutzer, 2011). Even when teachers do teach evolution, they often cover the topic in a trivial or disparaging way (Bandoli, 2008, and references therein), thereby perpetuating a cycle of ignorance reinforced by popular opinion (Berkman and Plutzer, 2011). When these students arrive on college campuses, they are predisposed to remain skeptical of evolution, for their perceptions and prior knowledge strongly influence their learning.  This is especially important for evolution, for many students view evolution as negative and undesirable (Brem, Ranney, and Schindel, 2003) and sense an “overlap of some ideas that the theory [of evolution] advocates with other social, epistemological, and religious beliefs” (Hakoyem and BouJaode, 2008).</p>


<h3>The Creationists Down the Hall</h3>
<p>Most Americans reject evolution, and most biologists have grown accustomed to headlines such as “Four in 10 Americans Believe in Strict Creationism” (Gallup, 2010) and “In U.S., 46% Hold Creationist View of Human Origins” (Gallup, 2012). However, most biologists are less familiar with the fact that creationism is thriving among undergraduate biology majors (Verhey, 2005; also see above), biology graduate students (Gregory and Ellis, 2009), and former students who have become biology teachers (Berkman, Pacheco, and Plutzer, 2008; Moore, 2007, and references therein).</p> 

<p>Despite their training, many biology teachers are creationists. Indeed, fully one-sixth of biology teachers are young-Earth creationists (Berkman, Pacheco, and Plutzer, 2008), and a presentation of young-Earth creationism as legitimate science would presumably confuse students about the basic tenets of science in general, and of evolution in particular. Because teachers’ personal views about a subject affect their teaching of the subject (Carlesen, 1991; Grossman, 1989), and because teachers with strong religious convictions accept evolution less often than their less-religious peers (Trani, 2004), it is not surprising that many of today’s biology teachers explicitly teach creationism in their biology courses. Although few biology teachers in public schools teach creationism without mentioning evolution, 20-25% of today’s biology teachers teach evolution <em>and</em> creationism in their courses (Moore, 2007, and references therein). Although a handful of creationism-based biology teachers are confronted for their malpractice (e.g., Rodney LeVake; see Moore, 2004), most are tolerated — and sometimes even encouraged — to teach creationism, possibly because of pressure from the public and administrators to ignore evolution and/or teach creationism (Cavanagh, 2005, Verango and Toppo, 2005). As Don Aguillard, the lead plaintiff in <em>Edwards v. Aguillard</em> (1987) noted in 1999 (Moore, 1999), “Creationism is alive and well among biology teachers.”</p>

<h3>When Biology Teachers Teach Creationism, What Do They Teach?</h3>
<p>When biology teachers teach creationism, they usually present only a particular version of the Judeo-Christian creation story. Moreover, these stories are often presented as a scientific alternative to evolution (Moore, 2008), despite the fact that creation science has “no scientific or educational value as science [because it] is simply not science” (<em>McLean v. Arkansas Board of Education</em>, 1982). Relatively few biology teachers who teach creationism present it as religious idea, philosophical idea, or as part of a survey of several religions (Moore, 2008).  They do not “teach the controversy,” in other words, but present the relationship between modern evolutionary biology and their faith as one of self-evident conflict, assuming (and teaching) that their version of creationism is the only true alternative.</p>

<h3>Does It Matter When Biology Teachers Teach Creationism?</h3>
<p>Yes—high school biology courses have a strong and lingering impact on students’ views of evolution and creationism (Moore and Cotner, 2009). Students who were taught creationism in high school know significantly less about evolution when they enter college than do students who were taught evolution in high school. Similarly, students who claimed that most of their knowledge of evolution came from non-school sources (e.g., the media, church) knew less about evolution than did students who claimed that their primary source of knowledge about evolution was their high school biology class (Moore, Cotner, and Bates, 2009). </p>

<h3>Solving the Problem?</h3>
<p>Several studies have claimed that additional evolution-related training will help improve the teaching of evolution in high schools. We are not nearly as optimistic. Although workshops and short-courses presumably help and encourage teachers willing to consider teaching evolution, focused instruction about evolution often does not affect students’ or teachers’ acceptance of evolution (Alters and Nelson, 2002; Chinsamy and Plaganyi, 2008). Moreover, these workshops will not reach creationism-based biology teachers who are dedicated to substituting their religious beliefs for science in their classes. </p>

<p>In our experience, these teachers rarely attend such workshops, even if they are paid to do so, and even then their acceptance of evolution is unaffected. After all, these teachers have access to and know the evidence for evolution – it’s widely available, including in the textbooks that they adopt and use in their classes – and they are not convinced by that evidence. We know of no evidence that the availability of such solely science-focused workshops, seminars, and other forms of evolution-related education will significantly affect what creationism-based biology teachers teach. Since the impediments to better teaching of evolution are primarily the philosophical and religious views of biology teachers, programs that do not address the more personal, “non-science” issues of science educators directly and effectively are likely to have little impact on what students learn in high-school biology classrooms.  Instead, if further fact-based instruction in evolution is part of the answer, it is likely to be most effective with young children, who are developmentally primed to seek explanations for natural phenomena.  However, evolution instruction is essentially absent prior to high-school biology; by high school, a student’s teleological demands have likely been met by supernatural explanations, creating a cycle of adults who know little about evolution and teach creationism-flavored biology.</p>

<p>Creationism has long been popular among biology teachers (Moore, 2007), and there is no evidence that improved state educational standards, proclamations by professional organizations, and decades of science education reform have made much difference.  As John Scopes commented almost 50 years ago, “I don’t think the world changes very rapidly” (Anonymous, 1966).</p>

<p><strong><a href="#notes"-1" onclick="toggle_visibility('notes-1');">View Literature Cited</a></strong></p>
<div style="display:none;" id="notes-1">
<p>Alters, B.J., and C.E. Nelson. 2002. Perspective: Teaching evolution in higher education. <em>Evolution</em> 56, 1891-901.</p>
<p>Anonymous. 1966. Monkey trial, 1966 style. <em>Christianity Today</em> 10 (15), 45-46.</p>
<p>Bandoli, J.H. 2008. Do state science standards matter? <em>American Biology Teacher</em> 70, 212-216.</p>
<p>Berkman, M.B. and E. Plutzer. 2011. Defeating creationism in the courtroom, but not in the classroom. <em>Science</em> 331, 404-405.</p>
<p>Berkman, M.B., J.S. Pacheco, & E. Plutzer. 2008. Evolution and creationism in America’s classrooms: A national portrait. <em>PLoS Biology</em> 6 (5), e124 doi:10.1371/journal.pbio.0060124</p>
<p>Brem, S.K., M. Ranney, & J. Schindel. 2003. Perceived consequences of evolution: College students perceive negative personal and social impact in evolutionary theory. <em>Science Education</em> 87 (2), 181-206.</p>
<p>Carlesen, S.W. 1991. Effects of new biology teachers’ subject-matter knowledge on curricular planning. <em>Science Education</em> 757, 631-647.</p>
<p>Cavanagh, S. 2005. Treatment of evolution inconsistent. <em>Education Week</em> 25 (11), 1, 26-27.</p>
<p>Chinsamy, A. and E. Plaganyi. 2008. Accepting evolution. <em>Evolution</em> 62, 248-254.</p>
<p><em>Edwards v. Aguillard</em>, 482 U.S. 578 (1987).</p>
<p>Gallup Poll. 2010. Four in 10 Americans believe in strict creationism. Retrieved December 26, 2012, from <a href="http://gallup.com/poll/145286/Four-Americans-Believe-Strict-Creationism.aspx">http://gallup.com/poll/145286/Four-Americans-Believe-Strict-Creationism.aspx</a></p>
<p>Gallup Poll. 2011. Evolution, creationism, intelligent design. Retrieved December 26, 2012, from <a href="http://gallup.com/poll/21814/evolution-creaionism-intelligent-design.aspx">http://gallup.com/poll/21814/evolution-creaionism-intelligent-design.aspx</a></p>
<p>Gallup Poll. 2012. In U.S., 46% hold creationist view of human origins. Retrieved December 26, 2012, from <a href="http://gallup.com/poll/155003/Hold-Creationist-View-Human-Origins.aspx">http://gallup.com/poll/155003/Hold-Creationist-View-Human-Origins.aspx</a></p>
<p>Gregory, T.R., and C.A.J. Ellis. 2009. Conceptions of evolution among science graduate students. <em>BioScience</em> 59 (9), 792-799.</p>
<p>Grossman, P.L. 1989. Learning to teach without teacher education. <em>Teachers College Record</em> 91, 191-208.</p>
<p>Harris Poll. 2009. What people do and do not believe in. Retrieved December 24, 2009, from <a href="http://www.harrisinteractive.com/harris_poll?pubs/Harris_Poll_2009_12_15.pdf">http://www.harrisinteractive.com/harris_poll?pubs/Harris_Poll_2009_12_15.pdf</a></p>
<p>Hokayem, H., & S. BouJaoude. 2008. College students’ perceptions of the theory of evolution. <em>Journal of Research in Science Teaching</em> 45, 395-419.</p>
<p><em>McLean v. Arkansas Board of Education</em>, 529 F. Supp. 1255, (E.D. Ark 1982). </p>
<p>Moore, R. 1999. The courage and convictions of Don Aguillard. <em>American Biology Teacher</em> 61, 166-174.</p>
<p>Moore, R. 2004. Standing up for our profession: A talk with Ken Hubert. <em>American Biology Teacher</em> 66, 325-327.</p>
<p>Moore, R. 2007. What are students taught about evolution? <em>McGill Journal of Education</em> 42, 177-186.</p>
<p>Moore, R. 2008. Creationism in the biology classroom: What do teachers teach and how do they teach it? <em>American Biology Teacher</em> 70, 69-73.</p>
<p>Moore, R. and S. Cotner. 2009. Rejecting Darwin: The occurrence and impact of creationism in high school biology classrooms. <em>American Biology Teacher</em> 71, 1-4.</p>
<p>Moore, R., S. Cotner, and A. Bates. 2009. The influence of religion and high school biology courses on students’ knowledge of evolution when they enter college. <em>Journal of Effective Teaching</em> 9 (2), 3-11. </p>
<p>Trani, R. 2004. I won’t teach evolution; it’s against my religion. And now for the rest of the story. <em>American Biology Teacher</em> 66, 419-427.</p>
<p>Verango, D. and G. Toppo. 2005. “Call to arms” on evolution. <em>USA Today</em>, March 24, p. B5.</p>
<p>Verhey, S.D. 2005. The effect of engaging prior learning on student attitudes toward creationism and evolution. <em>BioScience</em> 55, 996-1003. </p></div>]]></content:encoded>
        <pubDate>Tue, 22 Jan 13 04:44:18 -0800</pubDate>
        <dc:creator>Randy Moore, Cotner, Sehoya</dc:creator>
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        <title>Science and the Bible: Assessing the Evangelical Encounter with Evolution</title>
        <link>http://biologos.org/blog/science&#45;and&#45;the&#45;bible&#45;assessing&#45;the&#45;evangelical&#45;encounter&#45;with&#45;evolution?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/science&#45;and&#45;the&#45;bible&#45;assessing&#45;the&#45;evangelical&#45;encounter&#45;with&#45;evolution?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Having now completed our study of the five main views about “Science and the Bible” held by conservative Protestants, I conclude with a final column, assessing the whole situation as I see it today.</description>
        <content:encoded><![CDATA[<p>Having now completed our study of the five main views about “Science and the Bible” held by conservative Protestants, I conclude with a final column, assessing the whole situation as I see it today. </p>

<p>For more than a century, evangelicals and fundamentalists have typically rejected both evolution and higher biblical criticism. Sometimes there are good reasons: the claims of some biblical scholars are so outrageous and the claims of some scientists so anti-religious, that a strongly negative response is entirely appropriate. Too often, however, the evangelical encounter with modern science conforms to what <a href=" http://www.youtube.com/watch?v=eQviXavl1BA">historian Mark Noll</a> has called “the scandal of the evangelical mind”—namely, “that there is not much of an evangelical mind.” Attitudes toward science have been crucial to this analysis. As Noll says, “since 1960 creationism has done more than any other issue except abortion to inflame the cultural warfare in American public life.” (p. 192) </p>

<p>Readers who want to know more about Noll’s book and its reception should go <a href="http://www.liberalevangelical.org/index.php?option=com_content&view=article&id=144:the-scandal-of-the-evangelical-mind-by-mark-noll&catid=68:reviews-recent-a-relevant&Itemid=123">here</a> and <a href="http://www.firstthings.com/article/2008/08/003-the-scandal-of-the-evangelical-mind-a-symposium-33">here</a>. His conclusions about evangelicals and science are fully consistent with those I am about to present.</p>

<h3>Evangelicals in Tension with Science</h3>

<p>Evangelicals exhibit <em><strong>considerable tension and ambivalence</strong></em> when it comes to science, especially human evolution. On the one hand, evangelicals enthusiastically embrace the findings of science, when it comes to most applications in medicine and engineering. They also accept the experimental sciences, such as physics, chemistry, physiology, or thermodynamics. They have no problems with gravitation, the periodic table, the circulation of the blood, or the law of entropy. Here, their attitude is highly empirical: if it can be shown from repeatable experiments and observations, it’s true and presents no challenge whatsoever to religious belief.</p>

<p>On the other hand, evangelicals are quite hesitant to accept some conclusions of the so-called historical sciences, such as geology, cosmology, and evolutionary biology. Fundamentalists reject the very legitimacy of those sciences, and have created their own alternative explanation, “creation science,” which comports with their particular views of biblical authority and hermeneutics. Evangelicals are more ambivalent. As we’ve seen, many evangelicals accept the big bang and modern geology, with a 4.65 billion-year-old earth and the enormously long history of living things before humans arrived on the planet. But evolution–understood here to mean the common descent of humans and other organisms–presents very serious problems for many, perhaps most, evangelicals. This motivates them to look for alternative views.  </p>

<p>The alternatives evangelicals embrace are precisely those we have studied in this series. Some eagerly support the YEC view. Others prefer one of the many varieties of the OEC view. Many like the strident tone of the ID movement, with its vigorous assault on biological and cultural “Darwinism” and its near-universal rejection of human evolution. For most evangelicals, however, TE is probably not a viable option at present, for biblical and theological reasons.</p>

<h3>Reconciling Evolution with Scripture</h3>

<p>Most evangelicals do not see any reasonable way to combine human evolution with the following beliefs:</p>

<ul><li>the uniqueness of humans, who alone bear the “image of God”</li>

<li>the fall of Adam and Eve, the original parents of all humans, from a sinless state, by their own free choices to disobey God</li>

<li>the responsibility of each person for their own actions and beliefs, within a universe that is not fully deterministic</li>

<li>the redemption of individual persons by the atoning sacrifice of Christ.</li></ul>

<p>Evangelicals cannot and must not be separated from these crucial beliefs about human dignity, freedom, responsibility, sin, and redemption. The 64-dollar question is: can these beliefs be maintained without simultaneously affirming the necessity of an historical, separately created first human pair? The answer is probably in the hands of evangelical academics, especially theologians and biblical scholars. Can they be persuaded that the scientific evidence for evolution is sufficiently strong to warrant a re-examination of the traditional view?  Can a credible gospel and credible science be harmonized?  </p>

<p>There exists an enormous gap between popular conceptions of science–conclusions, methods, and attitudes–and those of scientists themselves. This gap is not unique to science among practitioners of specialized knowledge, and it is not unique to evangelicals among the lay public.  But it is real and very significant, and it affects theologians and biblical scholars no less than anyone else. Those who try to bridge this gap are mostly scientists (in their role as educators at colleges and universities and insofar as they write books for lay readers) and science journalists.  Many influential members of those professional communities are skeptical or even strongly hostile toward Christian beliefs, and this can exacerbate an already difficult state of affairs. If ways can be found to popularize good science, while showing appropriate sensitivity to the concerns of evangelicals, it would be a very good thing.</p>

<h3>Signs of Hope</h3>

<p>Certainly there are reasons to hope.  The conversation about science and religion is considerably broader now than it was at the time of the Scopes trial in 1925. Back then, many Protestants faced a very grim choice. On the one hand, they could follow politician William Jennings Bryan and the fundamentalists, rejecting modern science in the name of biblical authority and orthodox beliefs. On the other hand, they could follow theologian Shailer Mathews and the modernists, rejecting biblical authority and orthodox beliefs in the name of modern science. There was no one out there like John Polkinghorne, Francis Collins, Joan Centrella, Owen Gingerich, Simon Conway Morris, William Phillips, or Ian Hutchinson—to name just a few of the many top scientists today who accept evolution while affirming the divinity of Jesus, the bodily resurrection, and the actual divine creation of the universe. But they are all scientists, not theologians (except for Polkinghorne, who is both). In Galileo’s day, it was the scientists who eventually convinced the theologians and biblical scholars to accept Copernicus’ theory of the earth’s motion around the sun. But, it took a long time, and the process was difficult and often painful. Thus far, the biblical scholars and theologians who have tried to move the conversation forward have not been very well received, as Richard Ostling has <a href="http://www.christianitytoday.com/ct/2011/june/historicaladam.html">so capably reported</a>. I suspect we are in for more of the same.</p>

<h3>It’s Your Turn to Talk</h3>
<p>That’s what I think. What do you think? I’ll mainly be listening quietly, since I’ve now said all I wanted to say. Thank you all for hanging in there for ten months—far longer than I had originally anticipated. After a short respite I’ll return with a new series, but I’ll keep the topic under wraps for the time being.</p>]]></content:encoded>
        <pubDate>Thu, 17 Jan 13 06:00:57 -0800</pubDate>
        <dc:creator>Ted Davis</dc:creator>
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        <title>Introducing the BioLogos Navigator</title>
        <link>http://biologos.org/blog/introducing&#45;the&#45;biologos&#45;navigator?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/introducing&#45;the&#45;biologos&#45;navigator?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Part of BioLogos mission is to show how all things hold together in Christ—to show how a Christian worldview integrates the knowledge we have of God through the Scriptures with the knowledge we have of God through the other areas in which He reveals himself as Creator and Redeemer.</description>
        <content:encoded><![CDATA[<p>When we at BioLogos affirm that, “all things hold together in Christ,” what do we mean?  In short, we believe that there is no aspect of creation or of human experience that does not fall under the sovereignty and authority of God, and that He does not claim for himself and intend for redemption.  After all, at his resurrection, Jesus himself said, “All authority in heaven and on earth has been given to me” (Matthew 28:18). But more than just proclaiming God’s sovereignty over creation, we believe that God is revealing himself in every aspect of creation, as well—that led by the Holy Spirit, we will find pointers to God wherever we turn our gaze.  Christian knowledge, therefore, is not limited to the study of the Scriptures or of Church History, but includes the study of the natural world and of all of human culture, as well.  In fact, to fully appreciate God’s abundant grace and providence, we need to be looking to all of these domains of knowledge as domains of revelation, too. </p>

<p>Part of the BioLogos mission, then, is to show <em>how</em> all things hold together in Christ—to show how a Christian worldview integrates the knowledge we have of God through the Scriptures with the knowledge we have of God through the other areas in which he reveals himself as Creator and Redeemer.  Our website contains a wealth of Christian scholarship in a wide range of fields—from biology, to cosmology, to mathematics, to Biblical studies, to history, to theology—all demonstrating that the best contemporary science is compatible with Biblical Christian faith. But today we introduce a new tool—the BioLogos Navigator—to make these posts more accessible, and to show how they inter-relate (see sidebar on the right).  </p>

<p>Modeled on the astrolabes that early astronomers and sailors used to orient themselves under the heavens, our Navigator makes the cross of Christ the starting point by which we understand the cosmos.  Each of the four arms of the cross represents one of the domains of knowledge and experience through which God reveals himself to the world: Scripture, the Church, Nature and Culture.  These domains are not in opposition to each other, but are complementary and inter-related areas through which we can recognize God at work in the world. Linking these four domains is a network of specific topics relevant to the science and faith conversation.  Their arrangement suggests how each relates to the four domains but also to teach other.  Clicking on an individual topic tag highlights not only that topic, but other topics that are linked to it—sometimes in unexpected ways.</p>

<p>Clicking a topic tag a second time takes you to the Topic Landing page: a curated selection of the best resources on that subject from the BioLogos archives.  (The image above shows the <em><a href="http://biologos.org/navigator/Christianity+&+Science+-+Then+and+Now">Christianity & Science—Then and Now</a></em> Landing page, complete with Navigator and highlighted tags.) At the bottom of each page is a link to our Resource Finder, where you can investigate additional materials on that topic, as well. By exploring the relationships between the topics on the Navigator itself, and by delving deep into each topic via the resources presented on the landing pages, readers can focus on specific aspects of the harmony between science and Christian faith while also getting the wide view of God’s providential work in all things in the heavens and on the earth. </p>

<p>In the coming days and weeks, the BioLogos Navigator will be more fully integrated into the rest of the site, accessible directly from the Forum homepage and from the Resources dropdown list at the top of every page.  We’ll also be including features that help place each blog post on the “knowledge map” defined by the domains and topic tags.  Finally, the Topic Pages will also be periodically updated with the latest and best new materials in each topic. In the meantime, <strong>you can access the Navigator by clicking anywhere on the small image in the sidebar, above</strong>, and find a link to this post at the upper right corner of our homepage.  So take some time to explore our site with this new tool, which we think will to help orient our readers in the science and faith conversation, while always pointing to Jesus, the Christ, through whom all things were made.</p><br />]]></content:encoded>
        <pubDate>Thu, 27 Dec 12 06:19:49 -0800</pubDate>
        <dc:creator>Mark Sprinkle</dc:creator>
        <!--<dc:date>Dec 27, 2012 06:19</dc:date>-->
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            <item>
        <title>Surveying George Murphy&apos;s Theology of the Cross</title>
        <link>http://biologos.org/blog/surveying&#45;george&#45;murphys&#45;theology&#45;of&#45;the&#45;cross?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/surveying&#45;george&#45;murphys&#45;theology&#45;of&#45;the&#45;cross?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>If God himself is willing to die, particularly in such a gruesome way, then perhaps we should at least consider the possibility of God allowing the death of other creatures, too. But would this really be compatible with what we know of God through Scripture?</description>
        <content:encoded><![CDATA[<p style="margin: 0px 30px 0px 30px;"><em>Truly, I say to you, unless a grain of wheat falls into the earth and dies, it remains alone; but if it dies, it bears much fruit</em>. —John 12:24</p>

<h3>Introduction</h3>

<p>One of the reasons that some of us are hesitant to accept evolutionary creation is that it seems to make God responsible for the suffering and death of innumerable creatures over millions of years—before humans ever existed or sinned against their creator.  Since we believe in and worship a God who is loving, benevolent, and all-powerful, it sounds quite implausible that our God would have created a world like that; therefore, any scientific evidence for evolution <em>must</em> be incorrect.</p>

<p>Other people look at the scientific evidence for evolution and find a compelling case that it has taken place during our earth's history.  On this basis they may conclude that if evolution is true, then the belief in an all-powerful, perfectly good God must be false!</p>

<p>The trouble with both of these views is that they tend to invoke a completely abstract, philosophical god, not the living God of the Bible—the God who became a human being, experienced unimaginable suffering, and died in a grotesque and humiliating public display.  The death of Jesus completely defied the expectations (and common sense) of his followers, as well as the expectations of any “rational” understanding of the way the Creator of the universe should act in the world.  On the cross, in the person of Jesus, God took upon himself far more suffering than any creature has ever experienced.</p>

<p>If God himself is willing to die, particularly in such a gruesome way, then perhaps we should at least consider the possibility of God allowing the death of other creatures, too.  But would this really be compatible with what we know of God through Scripture?  In this essay, we will explore this quandary through a “theology of the cross”, a concept articulated by pastor George Murphy in his book <em>Cosmos in the Light of the Cross</em>.<sup>1</sup> </p>

<h3>Theology of the cross</h3>

<p>Before we jump into the theological problems associated with evolution, let’s take a look at how we understand Christian theology itself.  For the reformer Martin Luther, any theology (or science) that tries to reach knowledge of God apart from the cross is bad theology.<sup>2</sup>  Instead, Luther pointed to a <em>theologia crucis</em>, in which the true God is seen first and foremost “through suffering and the cross”. To make his point even clearer, Luther insisted that “the CROSS alone is our theology”.<sup>3</sup>   It is the lens through which we view <em>everything</em>.</p>

<p>Of course Martin Luther, having lived in the 16th century, was not aware of the vast history of life on our planet (or any other aspect of modern science, for that matter), but George Murphy draws from Luther’s teachings the foundation that all human knowledge begins with the Word made flesh and crucified.<sup>4</sup>   With the cross of Christ as the ultimate framework through which we view reality, we are bound to view the processes of nature quite differently.  As Murphy explains it,</p>

<blockquote>A theology of the cross is an explication of belief in a God who becomes a participant in the history of the universe and thereby shares in the suffering, loss, and death that are part of worldly experience.<sup>5</sup></blockquote>

<p>God does not sit idly by and watch unaffected as his creatures suffer, but neither does he swoop in and make everything completely effortless and easy.  Instead he chose another way, the crucifixion of Jesus—certainly not the approach that we would have preferred! The apostle Peter went so far as to try to talk Jesus out of it, but he was met with a stern rebuke (Matthew 16:21-23).</p>

As humans, we are inclined to recoil in horror at the idea of God being closely associated with the death.  Yet in the crucifixion we are forced to think of death and God together.  Jesus himself did not draw back from immense pain and suffering, but instead works <em>in</em> it and <em>through</em> it to accomplish his plans. In the cross we learn who God is, the One who brings new life from death (and ultimately conquers death completely).<sup>6</sup> 

<h3>Why is evolution so disconcerting to Christians?</h3>

<p>The problem of suffering throughout all of human history is troubling enough for us to reconcile with a loving, personal God.  But in addition to that, the discovery of vast numbers of fossils reveals that death has taken place on a far greater scale than we had ever imagined.  Both the wide variety of extinct creatures and their sheer numbers is quite staggering, and it raises questions about our Creator:</p>

<blockquote>The picture of a God who is immune from suffering and death but who forces organisms through millions of generations and extinction is disturbing to those who believe in a God of love.<sup>7</sup></blockquote>

<p>The mass extinction of life on earth was already well established by the early 19th century—decades before Darwin’s research—and extinction can be empirically verified independent of any theory of evolution.<sup>8</sup>   The fact that the earth’s crust is a veritable graveyard of long-lost creatures is deeply troubling, and as late as the 1790’s, distinguished intellectuals such as Thomas Jefferson denied the very possibility of extinction.<sup>9</sup></p>

<p>But in addition to the reality of species extinction, the theory of evolution by natural selection proposes that new species also arise in an environment containing widespread pain and death.  Both the creatures that are now living and those that are gone are tainted by an “acrid smell of death”.<sup>10</sup>  It makes us wonder, if our Creator is not the God of the dead, but of the living (Mk. 12:27), where is God’s presence in the evolutionary picture?</p>

<p>In all honesty, creation through evolution is not what we would <em>expect</em> from God, but Scripture is full of examples in which God acts in unexpected ways.  After all, God’s choosing to undergo an agonizing death on a cross is not what we would expect from the all-powerful Creator of the universe, either.  In both cases, new life comes about through pain, suffering, and death.  As George Murphy puts it,
</p>

<blockquote>A priori ideas about God have to be overcome, and God's character has to be learned from God's self-revelation.<sup>11</sup></blockquote>

<p>God’s fullest self-expression is in Jesus Christ himself, one who is intimately familiar with and personally endured creaturely pain and death.  The theology of the cross reveals that God's self-revelation takes place in situations of suffering, loss, and apparent hopelessness, much like situations that occur through natural selection.<sup>12</sup></p>

<h3>The crucifixion is disconcerting too</h3>

<p>Not only is creation through evolution an unexpected and unsettling process, but so is the crucifixion of Jesus!  Killing someone by hanging them on a cross is an unbearably painful, prolonged, humiliating form of death. It was such a horrific type of public execution that it wasn't until after the Roman Empire stopped the practice of crucifixion—and people no longer witnessed it personally—did the cross become a visual object of devotion.<sup>13</sup> Our culture is sufficiently removed from crucifixion that we are desensitized to its original significance, but to connect it to our current context, imagine the reaction you would get by wearing jewelry designed to look like an electric chair.<sup>14</sup></p>

<p>Once we are more attuned to the brutality of crucifixion, it seems all the more striking that the cross is the sign of God’s work, what George Murphy calls “the trademark of God”.<sup>15</sup>   The suffering and death of Jesus is featured prominently in the Gospels, but the crucifixion-resurrection pattern is strongly resonant within the Old Testament, too.  Israel suffered and toiled as slaves in Egypt for centuries before they were rescued in the Exodus, bringing life to a people who were spiritually dead.  Centuries later, the nation of Israel would experience death again when the Babylonians destroyed the Davidic monarchy, burned their Temple, killed their people, and sent many into exile.<sup>16</sup>  Neither Israel (God’s chosen people) nor Jesus (God’s own son) were spared from death and suffering; rather, suffering seems to have been the way in which God re-forms and renews humanity to fully bear His own image.</p>

<h3>Redemption extends to all of creation</h3>

<p>Fortunately, God’s story does not end with death.  God gives new life after his creatures have been subjected to terrible circumstances.  Redemption was promised to Israel itself—Ezekiel’s vision of the valley of dry bones describes how God would renew His chosen people (Ezek 37:1-14).  Later, the astonishing resurrection of Jesus made salvation possible not only for Jews, but for all people in Christ (Gal 3:26-29).  Ultimately, the New Testament makes it clear that God’s renewal will encompass the entire Creation:</p>

<blockquote>For God was pleased to have all his fullness dwell in him, and through him <strong>to reconcile to himself all things, whether things on earth or things in heaven</strong>, by making peace through his blood, shed on the cross. (Colossians 1:19-20)</blockquote>  

<blockquote>With all wisdom and understanding, he made known to us the mystery of his will according to his good pleasure, which he purposed in Christ, to be put into effect when the times reach their fulfillment—<strong>to bring unity to all things in heaven and on earth</strong> under Christ. (Ephesians 1:8-10)</blockquote>

<p>Christians are accustomed to thinking of the death of Christ in regard to humans, but our culture rarely acknowledges God plan for the redemption of His entire creation.  This is partly attributable to the fact that discussions of creation and origins are often separated from the topic of salvation.<sup>17</sup>   In doing so we tend to marginalize Jesus as we argue about Genesis.  Rather than fall into this trap, if we view nature through a theology of the cross, we will see Christ as both the alpha and the omega point in discussions of life’s history and life’s future.  With this perspective, we are more apt to sense our solidarity with the rest of creation as we wait in eager anticipation of a glorious future:</p>
	
<blockquote>The creation waits in eager expectation for the children of God to be revealed. For the creation was subjected to frustration, not by its own choice, but by the will of the one who subjected it, in hope that the <strong>creation itself will be liberated from its bondage to decay and brought into the freedom and glory of the children of God</strong>. (Romans 8:19-21)</blockquote>

<h3>Conclusion</h3>

<p>As part of the Church’s conversation about the problem of natural evil, this essay is meant to be a brief introduction to a “theology of the cross”.  One can explore this concept in greater detail in Murphy’s book <em>The Cosmos in the Light of the Cross</em>.  While there is a lot more to be said, let me conclude with the following observation:  though evolution may not be compatible with <em>some</em> interpretations of Christianity, <strong>evolutionary creation is certainly compatible with the crucified Christ and the theology of the cross</strong>.  In the person of Jesus, God suffers with the world and ultimately redeems it.  As George Murphy puts in, “The world's pains are God's stigmata.”<sup>18</sup></p>

<h3>Explore this Topic Further</h3>

<ul><li>Miller, Keith. <a href="http://biologos.org/blog/series/death-and-pain-in-the-created-order">“And God saw that it was good”: Death and Pain in the Created Order</a>. BioLogos series</li>

<li>Murphy, George L. <em>The Cosmos in the Light of the Cross</em>. Harrisburg, PA: Trinity Press, 2003.</li>

<li>Murphy, George L. “Cross, Evolution, and Theodicy: Telling It Like It Is”. In <em>The Evolution of Evil</em>. Edited by G. Bennett, M.J. Hewlett, T. Peters, and R.J. Russell. Göttingen: Vandenhoeck & Ruprecht, 2008.</li>

<li>Southgate, Christopher. <em>The Groaning of Creation: God, Evolution, and the Problem of Evil</em>. Louisville, KY: Westminister John Knox Press, 2008.</li></ul>

<h3>Notes</h3>
<p class="date">1.  Murphy, George L. <em>The Cosmos in the Light of the Cross</em>.  Harrisburg, PA: Trinity Press, 2003.<br />
2.  Murphy, p34<br />
3.  “CRUX Sola Est Nostra Theologia,” in <em>D. Martin Luthers Werke, Kritische Gesammtausgabe</em> (Weimar: Hermann Boehlau, 1892), 5:172.  The captitalization is in the original.  Cited in Murphy, p26.<br />
4.  Murphy, p108<br />
5.  Murphy, p4<br />
6.  Murphy, p43<br />
7.  Murphy, p3<br />
8.  Some Christians ascribe animal death to some combination of Adam’s fall and Noah’s flood, but this does not resolve the problem that the animals are still suffering and dying through no fault of their own.  See Keith Miller’s BioLogos series <a href="http://biologos.org/blog/series/death-and-pain-in-the-created-order">Death and Pain in the Created Order</a> for the limitations inherent in a fall-based theodicy.<br />
9.  Rudwick, Martin. <em>The meaning of fossils: Episodes in the history of paleontology</em>. Chicago, University of Chicago Press, 1985.<br />
10.  See Jeff Schloss’ BioLogos essay <a href="http://biologos.org/blog/series/southern-baptist-voices-evolution-and-death-series">Evolution, Creation, and the Sting of Death</a><br />
11.  Murphy, p63<br />
12.  Murphy, p122<br />
13.  Murphy, p27<br />
14.  This example is drawn from an evangelical outreach event held by a Christian student group in Innsbruck, Austria.  On campus one day, they started conversations with their classmates by asking the question, “Would you wear an electric chair on your neck?”<br />
15.  Murphy, George L.  <em>The Trademark of God: A Christian Course in Creation, Evolution, and Salvation</em>. Wilton, Conn.: Morehouse-Barlow, 1986.<br />
16.  Murphy, <em>Cosmos in the Light of the Cross</em>, p 31-32.<br />
17.  Murphy, p35<br />
18.  Murphy, p87</p>

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        <pubDate>Tue, 04 Dec 12 04:00:47 -0800</pubDate>
        <dc:creator>Thomas Burnett</dc:creator>
        <!--<dc:date>Dec 04, 2012 04:00</dc:date>-->
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        <title>Series: Confronting Our Fears</title>
        <link>http://biologos.org/blog/series/confronting&#45;our&#45;fears?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/confronting&#45;our&#45;fears?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In this series, U.S. Navy Commander Mike Beidler shares his own personal journey from accepting young&#45;earth creationism to embracing evolutionary creationism.</description>
        <content:encoded><![CDATA[<p>As we continue our tour of fears that confront evangelicals considering evolutionary creation, I’d like to start with an extended (and possibly familiar) quote from Augustine about what’s at stake when we ask, “What if I’m wrong?” </p>

<blockquote>Usually, even a non-Christian knows something about the earth, the heavens, and the other elements of this world, about the motion and orbit of the stars and even their size and relative positions, about the predictable eclipses of the sun and moon, the cycles of the years and the seasons, about the kinds of animals, shrubs, stones, and so forth, and this knowledge he holds to as being certain from reason and experience.<br /><br />
Now, it is a disgraceful and dangerous thing for an infidel to hear a Christian, presumably giving the meaning of Holy Scripture, talking nonsense on these topics; and we should take all means to prevent such an embarrassing situation, in which people show up vast ignorance in a Christian and laugh it to scorn. The shame is not so much that an ignorant individual is derided, but that people outside the household of faith think our sacred writers held such opinions, and, to the great loss of those for whose salvation we toil, the writers of our Scripture are criticized and rejected as unlearned men. <br /><br />
If they find a Christian mistaken in a field which they themselves know well and hear him maintaining his foolish opinions about our books, how are they going to believe those books in matters concerning the resurrection of the dead, the hope of eternal life, and the kingdom of heaven, when they think their pages are full of falsehoods and on facts which they themselves have learnt from experience and the light of reason? <br /><br />
Reckless and incompetent expounders of Holy Scripture bring untold trouble and sorrow on their wiser brethren when they are caught in one of their mischievous false opinions and are taken to task by those who are not bound by the authority of our sacred books. For then, to defend their utterly foolish and obviously untrue statements, they will try to call upon Holy Scripture for proof and even recite from memory many passages which they think support their position, although they understand neither what they say nor the things about which they make assertion.<sup>1</sup><br /><br />
– St. Augustine of Hippo (AD 354-430)</blockquote>

<p>For a good portion of my life, I had an extremely difficult time admitting that I was wrong.  To do so was an admission of intellectual failure, faulty logic, or simple <em>ignorance</em>—not knowing everything about everything.<sup>2</sup>  Being wrong is a hard pill to swallow sometimes, because in many cases it equates to losing face.  As it pertains to the creation-evolution debate, I believe that we evangelical Christians tend to express that fear by “holding the line” against certain areas of scientific study, rather than being willing to admit that we might be wrong.  In most cases, we have no problem accepting the authority of the world’s best physicists, chemists, meteorologists, engineers, and physicians.  Our problem tends to be with scientific authorities in only certain areas of study, such as biology, anthropology, paleontology, geology, and astronomy.  Why?  It’s because the Bible is the divinely inspired word of God and these areas conflict with the plain reading of Scripture, right?</p>

<p>When we evangelicals come to the table of scientific discussion, we tend to pick and choose those “foods” which appeal to us, while wrinkling our noses at what our theological tastes find disagreeable.  As long as the menu includes a wide assortment of things we already like, and we share the table with people with similar tastes, we can get along just fine with this strategy.  But is this wise in, say, a survival situation?  Food is food, and if we’re hungry enough and don’t have a life-threatening allergic reaction to something specific, I would venture to guess that we’d dig right in without a second thought.  In regard to the creation-evolution debate, I am convinced that the evangelical church will find itself in dire straights if we intentionally starve ourselves intellectually, especially with a healthy banquet in full sight and within reach.  I also think having a too-restricted “diet” limits our ability to sit down with those outside the church and can, as Augustine believed, play a role in actually prohibiting the secular world at large from coming to a saving knowledge of Christ, “to the great loss of those for whose salvation we toil.”  Several years ago, Bruce Waltke, former Evangelical Theological Society president and former professor of Old Testament at Dallas Theological Seminary, updated Augustine’s caution in a brief <a href="http://biologos.org/blog/why-must-the-church-come-to-accept-evolution">video</a> production for BioLogos, suggesting that the church risks losing our ability to really interact with the world if we don’t trust God’s providence in this area. Wheaton College’s Professor of Christian Thought, Mark Noll, as the very first sentence of his book <em>The Scandal of the Evangelical Mind</em> writes, “The scandal of the evangelical mind is that there is not much of an evangelical mind.”<sup>3</sup> If not for the fact that I’ve never met Professor Noll, I’d believe he was talking about me a decade ago.</p>

<p>What drives us evangelical Christians to “hold the line” against acknowledging truths in these certain categories of scientific knowledge?  After undergoing several theological shifts myself over the last decade, and seeing others do the same, I believe I’ve been able to “reverse engineer” what happened in my own life: It was a subtle slide from a confident faith into a comfortable, unwitting arrogance.  When we believe that we are in an intimate spiritual union with the Creator of the universe, it’s quite easy to forget (if we ever understood this in the first place) that God can couch theological truth in a variety of literary genres and, yes, even in the context of ancient, scientifically inaccurate cosmologies.<sup>4</sup> Caught up in the awesome truth of spiritual union, what makes perfect sense to us at any particular point in our spiritual walk can be easily confused with “<em>the</em> truth.”  We also gravitate toward churches that conform to our particular belief systems.  We prefer pastors who preach to the choir.  We buy books that support our particular theological system.  To attend another church, listen to a theologically edgy pastor, or read a book from a completely opposite viewpoint from what we’re accustomed to would be to invite a considerable measure of tension into an otherwise comfortable intellectual and spiritual environment. </p>

<p>How many of us actually have or take the time to study evolutionary biology, theology, the history of biblical interpretation, ANE literature, or modern translations of Babylonian creation myths?  I would venture to guess that very few of us have the same opportunities that professional scientists and theologians take for granted in their academic careers.  To overcome the fear of losing intellectual face, I recommend exposing oneself to different ways of thinking about these topics, including perspectives that you might deem “outside the box.”  Reading multi-view comparisons and critiques, such as those found in Zondervan’s wonderful Counterpoints series,  is particularly helpful in this regard.  Familiarity with and exposure to these views helps temper that initial fear or shock when we come across those few brothers and sisters in Christ who opt to take another approach to any one topic.  (One youth pastor friend of mine, when discovering my views on a particular topic, approached me and excitedly exclaimed that meeting me was like meeting a dragon: “You hear stories about them, but you never see one!”)  </p>

<p>A word of warning:  Before I adopted evolutionary creationism, my neatly packed theology was virtually stress-free.  Ignorance was truly bliss.  Then came the paradigm shift, and all sorts of previously suppressed tension, questions, and doubts rose to the surface.  Another word of warning:  If you’re <em>not</em> confronted with tension, questions, and doubts in your day-to-day spiritual walk, something’s wrong.  Wrestling with theological issues is not an activity to be avoided; it is a discipline to be vigorously pursued!  If you are comfortable enough in your relationship with the risen Savior, you should not fear admitting your ignorance on various topics and entering into a period of temporary uncertainty.  This fear can be remedied by taking advantage of a fully informed palette of theological options provided by genuine Jesus followers, including those that embrace biblical criticism.  If one’s faith is truly rooted in the One by, for, and through Whom all things were made, all the theories put forth by the higher biblical critics and esoteric scientists should be no cause for fear—but all should be cause for loving dialogue.</p>

<h3>Notes</h3>
<p class="date">1. St. Augustine of Hippo, <em>The Literal Meaning of Genesis (De Genesi ad litteram)</em>, Trans. J. H. Taylor, in <em>Ancient Christian Writers</em> (Long Prairie, MN: Newman Press, 1982), vol. 41.<br/>
2. “Ignorant,” Oxford Dictionaries, accessed October 08, 2012, <a href="http://oxforddictionaries.com/definition/english/ignorant">http://oxforddictionaries.com/definition/english/ignorant</a>.<br/>
3. Mark A. Noll, <em>The Scandal of the Evangelical Mind</em> (Grand Rapids: William B. Eerdmans Publishing Company, 1994), 3.<br />
4. See Denis Lamoureux, <em>Evolutionary Creation: A Christian Approach to Evolution</em> (Eugene, OR: Wipf and Stock Publishers, 2008); Brian Godawa, <a href="http://biologos.org/uploads/projects/godawa_scholarly_paper_2.pdf">“Mesopotamian Cosmic Geography in the Bible,”</a> accessed October 04, 2012.</p>

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        <pubDate>Fri, 30 Nov 12 03:58:59 -0800</pubDate>
        <dc:creator>Mike Beidler</dc:creator>
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        <title>Series: “And God Saw That It Was Good”: Death and Pain in the Created Order</title>
        <link>http://biologos.org/blog/series/death&#45;and&#45;pain&#45;in&#45;the&#45;created&#45;order?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/death&#45;and&#45;pain&#45;in&#45;the&#45;created&#45;order?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>The tension generated by our understanding of God’s character, as revealed in the Bible, and by the reality of the natural world around us has been the focus of much debate within the Christian church since the first century. This series examines critically several of the proposed solutions to this problem, viewing them from the perspective of a geologist, paleontologist, and orthodox evangelical Christian.</description>
        <content:encoded><![CDATA[<h3>To Mrs. Professor in Defense of My Cat’s Honor and Not Only</h3>

<p><em>My valiant helper, a small-sized tiger <br />
Sleeps sweetly on my desk, by the computer,<br />
Unaware that you insult his tribe.<br /><br />

Cats play with a mouse or with a half-dead mole.<br />
You are wrong, though: it’s not out of cruelty.<br />
They simply like a thing that moves.<br /><br />

For, after all, we know that only consciousness<br />
Can for a moment move into the Other, <br />
Empathize with the pain and panic of a mouse.<br /><br />

And such as cats are, all of Nature is. <br />
Indifferent, alas, to the good and the evil. <br />
Quite a problem for us, I am afraid.<br /><br />

Natural history has its museums, <br />
But why should our children learn about monsters,<br />
An earth of snakes and reptiles for millions of years?<br /><br />

Nature devouring, nature devoured, <br />
Butchery day and night smoking with blood. <br />
And who created it? Was it the good Lord?<br /><br />

Yes, undoubtedly, they are innocent, <br />
Spiders, mantises, sharks, pythons. <br />
We are the only ones who say: cruelty.<br /><br />

Our consciousness and our conscience <br />
Alone in the pale anthill of galaxies <br />
Put their hope in a humane God.<br /><br />

Who cannot but feel and think, <br />
Who is kindred to us by his warmth and movement, <br />
For we are, as he told us, similar to Him.<br /><br />

Yet if it is so, then He takes pity <br />
On every mauled mouse, every wounded bird. <br />
Then the universe for him is like a Crucifixion.<br /><br />

Such is the outcome of your attack on the cat:<br />
A theological, Augustinian grimace, <br />
Which makes difficult our walking on this earth.</em></p>

<p>–Czeslaw Milosz,<sup>1</sup>  translated by the author and Robert Hass</p>

<h3>The Problem</h3>

<p>The poem above communicates in a very poignant and profound way the essence of the theological problem of death, pain, and suffering in the natural world—what has been referred to as “natural evil.” As we will see, it may also point to at least one aspect of a Christian response.</p>

<p>I have become convinced that one of the fundamental issues underlying much of the resistance of many Christians to an ancient, evolving creation is that of the problem of “natural evil.” “Natural evil” is also very often a primary focus of those who reject a personal and compassionate God, as it was for Darwin himself. The issue of theodicy thus seems not only to drive many people of Christian faith away from an acceptance of the conclusions of modern science, but also to drive members of the scientific community away from a serious consideration of the claims of the Christian faith. The topic is important, then not because its solution is central to the validity of the Christian faith, but because it often serves as an unnecessary stumbling block to a productive engagement of both science and faith.</p>

<p>The tension generated by our understanding of God’s character, as revealed in the Bible, and by the reality of the natural world around us has been the focus of much theological and philosophical debate within the Christian church since the first century. This article sets out to examine critically several of the proposed solutions to this problem, viewing them from the perspective of a geologist, paleontologist, and orthodox evangelical Christian.</p>

<p>The theological problem of death and pain emerges from the following propositional statements:</p> 

<ol><li>Scripture consistently declares the absolute goodness of God and the very goodness of his creation. Furthermore, Scripture declares God’s love and care for creation, and the glory and praise it returns to him.</li>

<li>Scripture also confesses a transcendent God who is omnipotent in power, yet immanent in creation as well. God’s creative activity is not described as being confined to some past event at the beginning of time, but as a present and continuing reality. God upholds creation in its being from moment to moment, and is creatively active in its history. This understanding of God’s relationship to creation has been well articulated by Jürgen Moltmann.<sup>2</sup></li>

<li>In seeming conflict with these confessions of God’s character, we observe death, pain, and suffering as ubiquitous, even integral, aspects of the creation around us.</li></ol>

<p>The apparent conflict between God’s goodness and the presence of pain and suffering is made especially acute when we consider the nonhuman creation.<sup>3</sup> How can we accommodate the death and suffering of animals within a theology that declares both God’s omnipotence and goodness? C. S. Lewis forcefully puts the issue before us in his book <em>The Problem of Pain</em>:</p>

<blockquote>The problem of animal suffering is appalling; not because the animals are so numerous ... but because the Christian explanation of human pain cannot be extended to animal pain. So far as we know beasts are incapable either of sin or virtue: therefore they can neither deserve pain nor be improved by it.<sup>4</sup></blockquote>

<p>Because the issue of animal pain so directly impacts our understanding of the goodness of creation, I will focus particularly on solutions to the problem as posed by Lewis.</p>

<p>How do we then reconcile the goodness of God who is immanent and active in his creation with the death, pain, and suffering we see embedded within it? There seem to be two basic alternative approaches to this dilemma.<sup>5</sup></p> 

<ol><li>Natural evil can be attributed to something independent of God and acting against his will. This position threatens to limit God’s power and freedom.</li>

<li>Natural evil can be considered a part of God’s good purpose for creation, and either directly willed or permitted by him. Such a view would seem to bring into question God’s goodness and love for his creatures.</li></ol>
 
<p>The tension between these alternatives—and efforts to avoid their negative theological consequences—surface in many of the proposed solutions to this problem.</p>

<p class="intro">In part 2, we start to look at some of the proposed solutions, beginning with the idea that a perfect creation was corrupted by a fall.</p>

<h3>Notes</h3>

<p class="date">1. This poem was included in a collection of poems that was one of two works by Czeslaw Milosz mentioned in a review article by Michael Ignatieff, “The Art of Witness,” <em>New York Review of Books</em> (March 23, 1995). I thank Carol Regehr for bringing my attention to this work.<br />
2. Moltmann refers to this aspect of God’s creative activity in history as “continuous creation.” Jürgen Moltmann, <em>God in Creation</em> (Minneapolis, MN: Fortress Press, 1993), 206–14.<br />
3. I will not address here arguments concerning the degree to which animals experience pain. This issue is considered by Robert Wennberg in “Animal Suffering and the Problem of Evil,” <em>Christian Scholar’s Review</em> 21 (1991): 120–40. It is obvious to me that, for many animals at least, pain and suffering are a very real conscious experience.<br />
4. C. S. Lewis, <em>The Problem of Pain</em> (New York: Macmillan Publishing, 1962), 129.<br />
5. As stated by John Hick, in <em>Evil and the God of Love</em>, rev. ed. (New York: HarperCollins Publishers, 1977): “For every position that maintains the perfect goodness of God is bound either to let go the absolute divine power and freedom, or else to hold that evil exists ultimately within God’s good purpose” (pp. 149–50).</p>
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        <pubDate>Sat, 24 Nov 12 06:00:30 -0800</pubDate>
        <dc:creator>Keith Miller</dc:creator>
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        <title>Katharine Hayhoe: Evangelical Christian, Climate Scientist</title>
        <link>http://biologos.org/blog/kathryn&#45;hayhoe&#45;evangelical&#45;christians&#45;climate&#45;scientist?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/kathryn&#45;hayhoe&#45;evangelical&#45;christians&#45;climate&#45;scientist?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>As an Evangelical and a scientist, Katharine Hayhoe is already a member of a rare breed.  As a climate change researcher who is also married to an evangelical Christian pastor, she is nearly one of a kind.</description>
        <content:encoded><![CDATA[<p>As an evangelical scientist, Katharine Hayhoe is already a member of a rare breed.  As a climate change researcher who is also married to an evangelical Christian pastor, she is nearly one of a kind.  In these three videos, Hayhoe divulges her beliefs about God, climate change, and the difficulties of believing in both those things.</p>

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<p>The first video, “10 Questions with Katherine Hayhoe”, introduces the scientist in a brief and lighthearted interview.  Hayhoe is presented with 10 questions concerning her personal life and beliefs.  When asked, she explains that one thing people should know about Christianity is that having a relationship with the God of the universe is one of the most incredible experiences that a person can have. As the video unfolds, the viewer quickly begins to realize that, despite her unique profession of two seemingly incompatible beliefs, Hayhoe is a remarkably sane and “normal” individual.  Her role model, she explains, is her father-- the person who first introduced her to science and showed her that it could be “really cool”.  On a more serious note, the scientist admits that being both a scientist and a Christian can be difficult.  The most frustrating thing about her position, she says, is the amount of disinformation which is targeted at her very own Christian community.</p>
 
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<p>In the second video, “Climate Change Evangelist”, Katharine Hayhoe delves into deeper discussion of the perceived conflict between climate change and Christian faith.  She explains that admitting her identity as a Christian scientist can be uncomfortable.  Since evangelicals are the targets of much disinformation concerning science in general -- and specifically the science surrounding climate change -- many people in the church have a misguided view of the subject and do not look kindly at her career choice.  One woman encountered by Hayhoe at a church in Texas, for example, believed that global warming was a lie taught in schools to mislead her children.  In an effort to realign misguided views like these, Katharine Hayhoe and her husband wrote a book addressing the deep-rooted emotions often associated with climate change.  People fear that addressing the climate issue will bring forth changes in the economy and uproot their way of life.  However, Hayhoe encourages her viewers to act out of love, as the Bible calls us to do, rather than out of fear.  Acting out of love inspires us to consider the poor and disadvantaged people around the globe when we respond to the reality of a changing climate.</p>

<p align="center"><object width="512" height="288"><param name="movie" value="http://www.pbs.org/wgbh/nova/secretlife/site_media/player.swf"></param><param name="allowFullScreen" value="false"></param><param name="flashvars" value="bgcolor=#000000&amp;autostart=false&amp;showdigits=true&amp;showicons=false&amp;bufferlength=3&amp;fullscreen=true&amp;skin=http://www.pbs.org/wgbh/nova/secretlife/site_media/stijl.swf&amp;controlbar=over&amp;file=http://www-tc.pbs.org/wgbh/nova/secretlife/site_media/video/Katharine_Hayhoe_Science_512x288-H264-500.mp4&amp;image=http://www-tc.pbs.org/wgbh/nova/secretlife/site_media/video_stills/Katharine-video4still-mean.jpg&amp;"></param><embed src="http://www.pbs.org/wgbh/nova/secretlife/site_media/player.swf" width="512" height="288" allowscriptaccess="never" allowfullscreen="false" flashvars="bgcolor=#000000&amp;autostart=false&amp;showdigits=true&amp;showicons=false&amp;bufferlength=3&amp;fullscreen=true&amp;skin=http://www.pbs.org/wgbh/nova/secretlife/site_media/stijl.swf&amp;controlbar=over&amp;file=http://www-tc.pbs.org/wgbh/nova/secretlife/site_media/video/Katharine_Hayhoe_Science_512x288-H264-500.mp4&amp;image=http://www-tc.pbs.org/wgbh/nova/secretlife/site_media/video_stills/Katharine-video4still-mean.jpg&amp;"></embed></object></p>

<p>In the final segment of this three part video montage, Hayhoe addresses the question of what climate change means. Specifically, she is concerned about how global warming affects people on a personal level.  While global warming generally brings to mind melting ice caps and polar bears, its implications are far more widespread, affecting the lives of everyone around the world- from cotton farmers in Texas to public health workers in Chicago.  If nothing is done to change current emission levels, the number of days per year which exceed 100 degrees Fahrenheit, for example, will begin to increase dramatically, and if emissions are increased, many areas will even develop extreme conditions like those seen currently in Death Valley.  Hayhoe’s goal is to demonstrate clearly that the only way to preserve the world for future generations is to significantly reduce dependence on inefficient means of getting energy and instead transition to cleaner renewable energy sources.</p>

<p><strong>Editor's Note: These videos first appeared on the Nova program <a href="http://www.pbs.org/wgbh/nova/secretlife/scientists/katharine-hayhoe/" target="_blank">"The Secret Life of Scientists & Engineers"</a>.</strong></p>]]></content:encoded>
        <pubDate>Fri, 09 Nov 12 05:00:21 -0800</pubDate>
        <dc:creator>Katharine Hayhoe</dc:creator>
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        <title>Series: It&apos;s an Old World After All</title>
        <link>http://biologos.org/blog/series/its&#45;an&#45;old&#45;world&#45;after&#45;all?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/its&#45;an&#45;old&#45;world&#45;after&#45;all?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In our sixth BioLogos videocast, we take a look at the age of the Earth. We explain four methods scientists have used to determine that age: tree ring, lake varve, radiometric, and seafloor spread dating, and also offer some theological insight on how an old earth can fit with the first chapters of Genesis.</description>
        <content:encoded><![CDATA[<p>In our last Videocast, we explored some of the ways scientists have been able to determine the age of hominid fossils. Today, in our sixth BioLogos videocast, we extend the question to the age of the Earth. The first section, featured today, explains four methods scientists have used to determine that age: tree ring, lake varve, radiometric, and seafloor spread dating.</p>

<p>The script was written by biology student Joy Walters, with help from BioLogos president Darrel Falk.</p>
]]></content:encoded>
        <pubDate>Tue, 06 Nov 12 07:00:44 -0800</pubDate>
        <dc:creator>Joy Walters</dc:creator>
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        <title>Series: Behe, Lenski and the “Edge” of Evolution</title>
        <link>http://biologos.org/blog/series/behe&#45;lenski&#45;and&#45;the&#45;edge&#45;of&#45;evolution?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/behe&#45;lenski&#45;and&#45;the&#45;edge&#45;of&#45;evolution?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In this series, we reexamine the claim made by Intelligent Design proponent Michael Behe to have found a limit to “Darwinian” evolution in light of recent results from the laboratory of Richard Lenski.</description>
        <content:encoded><![CDATA[<h3>Climbing Mount Citrate</h3>
<p>As we discussed yesterday, the most dramatic innovation yet observed in the <em>E. coli</em> Long Term Evolution Experiment (LTEE) was the ability, acquired by one of the twelve cultures, to use citrate as a carbon source under aerobic conditions. When we <a href="http://biologos.org/blog/evolution-and-the-origin-of-biological-information-part-2-e-coli-vs-id">last discussed</a> the LTEE in 2011, we noted what was known then about the mutations that eventually combined to produce the Cit+ trait: </p>

<blockquote><p>Tracking down the nature of this dramatic change led to some interesting findings. The ability to use citrate as a food source did not arise in a single step, but rather as a series of steps, some of which are separated by thousands of generations:</p>

<ol><li>The first step is a mutation that arose at around generation 20,000. This mutation on its own does not allow the bacteria to use citrate, but without this mutation in place, later generations cannot evolve the ability to use citrate. Lenski and colleagues were careful to determine that this mutation is not simply a mutation that increases the background mutation rate. In other words, a portion of what later becomes “specified information for using citrate” arises thousands of generations before citrate is ever used.</li>
<li>The earliest mutants that can use citrate as a food source do so very, very poorly – once they use up the available glucose, they take a long time to switch over to using citrate. These “early adopters” are a tiny fraction of the overall population. The “specified information for using citrate” at this stage is pretty poor.</li>
<li>Once the (poor) ability to use citrate shows up, other mutations arise that greatly improve this new ability. Soon, bacteria that use citrate dominate the population. The “specified information for using citrate” has now been honed by further mutation and natural selection.</li>
<li>Despite the “takeover”, a fraction of the population unable to use citrate persists as a minority. These cells eke out a living by being “glucose specialists” – they are better at using up glucose rapidly and then going into stasis before the slightly slower citrate-eaters catch up. So, new “specified information to get the glucose quickly before those pesky citrate-eaters do” allows these bacteria to survive. As such, the two lineages in this population have partitioned the available resources and now occupy two different ecological niches in the same environment. As such, they are well on their way to becoming different bacterial species.</li></ol></blockquote>

<p>As such, we noted three distinct steps observed by the Lenski group: steps they call <em>potentiation</em>, <em>actualization</em>, and <em>refinement</em>. <em>Potentiation</em> mutations do not themselves result in the ability to use citrate under aerobic conditions, but they are necessary for it to appear later. <em>Actualization</em> is the mutation that first brings about the Cit+ trait, though, as we noted, this step produced only a very weak Cit+ effect. This nascent ability, however, then undergoes <em>refinement</em> through additional mutations and selection to give the final, robust Cit+ trait observed in the culture.</p>

<p>While some things were known about these steps when the Lenski group last published on this topic (in 2008), the precise details remained unclear. What was needed was a complete characterization of the Cit+ bacteria through whole-genome sequencing to help indentify the changes. These long-awaited results are now available in a <a href="http://www.nature.com/nature/journal/v489/n7417/full/nature11514.html">new paper</a> published last month by the Lenski group, and they shed light on all three stages of the process. </p>

<h3>Lights, camera, actualization</h3>
<p>The key step - and the one of greatest interest - is of course actualization: the mutation that converted a Cit- cell to a Cit+ one. This is also one of the easiest steps to study, since the mutation provides the cell with a new feature that can be detected experimentally. Though <em>E. coli</em> cannot use citrate as a carbon source in the presence of oxygen, they are capable of using citrate in anoxic conditions (i.e. when oxygen is absent). To do so, they employ a protein that imports citrate in to the cell while at the same time exporting a compound called succinate. Since this protein is already present in the <em>E. coli</em> genome, it was long suspected that a genetic regulatory change that turned on its production in the presence of oxygen could be the key innovation that produced the first Cit+ bacterium in the culture. As we discussed <a href="http://biologos.org/blog/behe-lenski-and-the-edge-of-evolution-part-1">yesterday</a>, Behe notes that this change could result from a loss-of-FCT or a gain-of-FCT mutation: </p>

<blockquote>“If the phenotype of the Lenski Cit+ strain is caused by the loss of the activity of a normal genetic regulatory element, such as a repressor binding site or other FCT, it will, of course, be a loss-of-FCT mutation, despite its highly adaptive effects in the presence of citrate. If the phenotype is due to one or more mutations that result in, for example, the addition of a novel genetic regulatory element, gene duplication with sequence divergence, or the gain of a new binding site, then it will be a noteworthy gain-of-FCT mutation.”</blockquote>

<p>Interestingly, the actualization mutation was indeed a change of regulation of the anoxic citrate / succinate transporter, and it arose through a gain-of-FCT mutation. The mutation turned out to be a side-by-side duplication of the citrate / succinate transporter gene, as well as portions of two genes on either side of it. This imprecise duplication placed a partial fusion of these flanking genes next door to one of the copies of the citrate / succinate transporter gene. This brought the copy under the control of promoter sequences derived from of one of its neighbors, a gene that is active when oxygen is present. The resulting product was a copy of the citrate / succinate transporter gene that was now very weakly expressed in aerobic conditions. Since this is an example of a mutation that duplicates a gene and simultaneously creates a new regulatory element for it (causing significant sequence divergence), this is a clear-cut example of a gain-of-FCT mutation. </p>

<h3>Responding to the data</h3>
<p>While Behe has not yet, to my knowledge commented on this particular development within the LTEE, one of his colleagues in the Intelligent Design Movement (IDM), microbiologist Ann Gauger, has offered <a href="http://www.evolutionnews.org/2012/10/innovation_or064701.html">her thoughts</a>. Two themes emerge in her commentary: that the Cit+ trait is “not new”, and that the number of mutations it required  were within the bounds set out by Behe and another member of the IDM, structural biologist Douglas Axe: </p>

<blockquote><p>When is an innovation not an innovation? If by innovation you mean the evolution of something new, a feature not present before, then it would be stretching it to call the trait described by Blount et al. in "Genomic analysis of a key innovation in an experimental Escherichia coli population" an innovation [...]</p>
<p>The total number of mutations postulated for this adaptation is two or three, within the limits proposed for complex adaptations by Axe (2010) and Behe in Edge of Evolution. Because the enabling pre-adaptive mutations could not be identified, though, we don't know whether this was one mutation, a simple step-wise series of adaptive mutations, or a complex adaptation requiring one or two pre-adaptations before the big event.</p>
<p>But does this adaptation constitute a genuine innovation? That depends on the definition of innovation you use. It certainly is an example of reusing existing information in a new context, thus producing a new niche for E. coli in lab cultures. But if the definition of innovation is something genuinely new, such as a new transport molecule or a new enzyme, then no, this adaptation falls short as an innovation. And no one should be surprised.</p></blockquote>

<p>While Gauger does not speak to the tension between her description of the Cit+ mutation as “not genuinely new” and Behe’s criteria that this should be classified as a gain-of-FCT mutation, it is clear that she views this event as within Behe’s “edge” – i.e. within the bounds of “what Darwinism can do.” Additionally, she sees it as falling within the scope of what is evolutionarily possible as proposed by Axe’s work. In the next installment of this series, we’ll revisit how Behe defines his (claimed) limit of what evolutionary processes can accomplish, with this new evidence in hand. In doing so, a careful examination of the potentiation and refinement phases of the Cit+ transition will be informative. </p>

<h3>For further reading: </h3>
<p>Blount, Z.D., Barrick, J.E., Davidson, C.J. and Lenski, R.E. (2012). Genomic analysis of a key innovation in an experimental <em>Escherichia coli</em> population. <em>Nature</em> 489; 513- 518. </p>
<p>Michael J. Behe, <em>The Edge of Evolution: The Search for the Limits of Darwinism</em> (New York: Free Press, 2007).</p>
<p>Michael J. Behe (2010). Experimental evolution, loss-of-function mutations, and “The first rule of adaptive evolution”. <em>The Quarterly Review of Biology</em> 85(4); 419-445. </p>
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        <pubDate>Tue, 23 Oct 12 09:17:13 -0700</pubDate>
        <dc:creator>Dennis Venema</dc:creator>
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        <title>What I Would Like To Hear A Young&#45;Earth Creationist Say</title>
        <link>http://biologos.org/blog/what&#45;i&#45;would&#45;like&#45;to&#45;hear&#45;a&#45;young&#45;earth&#45;creationist&#45;say?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/what&#45;i&#45;would&#45;like&#45;to&#45;hear&#45;a&#45;young&#45;earth&#45;creationist&#45;say?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>It may come as a surprise that when asked by The Colossian Forum what one thing he would like to hear Young Earth Creationists say, his answer had nothing to do with scientific statements at all. Rather, his hope is to hear a single simple phrase: “We’re both part of the same family.”</description>
        <content:encoded><![CDATA[<p>As The BioLogos Foundation’s Senior Fellow of Biology, Dr. Dennis Venema is no stranger to the many arguments against and misconceptions about evolutionary theory. In fact many of his over 40 posts for The BioLogos Forum deal with clarifying wrong assumptions about evolution, including the evidence for common descent in our genes, and the mechanisms of speciation. So it may come as a surprise that when asked by The Colossian Forum what one thing he would like to hear Young Earth Creationists say, his answer had nothing to do with scientific statements at all. Rather, his hope is to hear a single simple phrase: “We’re both part of the same family.” </p>

<p>As a scientist at a Christian university, Dr. Venema has experienced first-hand the breakdown of fellowship that can happen over disagreements about creation. Sometimes it can be a large falling out, but other times it can be as simple as a look-- when Christian brothers or sisters appear incredulous upon learning that your views about origins differ from theirs, as if they’re reassessing your place in the family of God.</p>

<p>Dr. Venema notes this breakdown can come from both sides: from YECs who view those who accept evolution as “compromisers” and “wolves in sheep’s clothing” as well as from ECs who view those hold YEC beliefs as “ignorant” or “fundamentalists”.</p>

<p>That’s not to say that science-and-faith discussions aren’t important. As Dr. Venema puts it:</p>

<blockquote>Is it an important issue for Christians to discuss? Yes. Does the issue serve as a catalyst for a wide-ranging discussion on exegesis and hermeneutics? Certainly, and that in and of itself can be very healthy. Is it acceptable for believers to hold either opinion and be within the people of God? I would say yes. It is my conviction that the mechanism by which God created is an issue of secondary importance compared to the underlying primary issue of holding God as the Creator and sustainer of all things. As a secondary issue, then, the only danger is making one of the options an essential, and dividing over it. Is it a problem if my brother or sister at church is a YEC? No. Is it a problem if I won’t share fellowship with them because of their views? Absolutely. Our difference of opinion on the mechanism of creation is not a gospel issue, but breaking fellowship over a secondary matter is a gospel issue. It hinders the love and fellowship that we are called to be known for, and raises an unnecessary barrier to those who would consider joining us.</blockquote>

<p>You can read his full response at <a href="http://www.colossianforum.org/2012/10/16/article-what-i-would-like-to-hear-a-young-earth-creationist-say/">The Colossian Forum</a>.</p>

<h3>What is the Colossian Forum?</h3>
<p>Based in Grand Rapids, Michigan, the Colossian Forum's mission is to make concrete the unity all Christians have in Jesus--particularly in the science and faith conversation. Through retreats, a website, curricula, and scholarly research, the Forum seeks to promote growth, transformation, and unity in Christ. In their own words, "they aim make a new way forward together" by bringing people into "serious discussion of the deep riches of our Christian intellectual tradition—riches that shed light on the hard questions of science, culture and Christian faith.”</p>
]]></content:encoded>
        <pubDate>Sat, 20 Oct 12 08:00:04 -0700</pubDate>
        <dc:creator>Dennis Venema</dc:creator>
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        <title>Oxygen and Co&#45;Creation</title>
        <link>http://biologos.org/blog/oxygen&#45;and&#45;co&#45;creation?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/oxygen&#45;and&#45;co&#45;creation?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In the mid&#45;seventeenth century, John Mayow conducted a series of experiments in which he showed that burning candles in bell jars consumed one&#45;fifth of the enclosed air before extinguishing. Remarkably, mice placed in bell jars did exactly the same thing...</description>
        <content:encoded><![CDATA[<p>In the mid-seventeenth century, John Mayow conducted a series of experiments in which he showed that burning candles in bell jars consumed one-fifth of the enclosed air before extinguishing. Remarkably, mice placed in bell jars did exactly the same thing (although the conclusions of these experiments were rather more terminal for the living subjects than for the candles). He concluded that a substance making up 20% of air was necessary for both combustion and respiration. More than a century later, Joseph Priestley showed that a mouse in a closed container would not die if a plant was included. Apparently plants were capable of restoring nitroaerus, which Priestley called &quot;dephlogisticated air,&quot; removed by animals.</p>
<p>In 1774, the French chemist Antoine Lavoisier replicated the relevant experiments in more controlled ways to demonstrate that mass was conserved during combustion. He also renamed the part of the air that burned 'oxyg&egrave;ne.' English scientists resisted the French scientist's new name, not least because the English Priestly had already published his discovery of the gas. 'Oxygen' nonetheless entered the common English vocabulary in part due to one of the first popular science books, <em>The Botanic Garden</em> (1791), which included a poem praising the gas using the preferred French name. By coincidence, this book also promoted some early ideas about biological evolution (specifically, it suggested that sexual reproduction might be important to evolution, which might help to explain the popularity of a book of poems about science). It was written by Erasmus Darwin, the grandfather of Charles Darwin, who first proposed the modern form of the theory of biological evolution in his 1859 book, <em>On the Origin of Species</em>.</p>
<p>150 years later, we are discovering that the lines connecting evolution and oxygen run deeper than the Darwin family tree. We now know, for instance, that for roughly half of the Earth's 4.6-billion-years of history, there was little to no oxygen in the atmosphere. Instead, oxygen entered the atmosphere in two major pulses, with one between 2.4 and 2.2 billion years ago, and another between 0.8 and 0.54 billion years ago. Recent evidence suggests that the first pulse may have actually been the largest event in a series of fits and starts beginning at around 2.7 billion years ago that finally produced a stable low oxygen atmosphere by around 1.8 billion years ago.</p>
<p>Remarkably, both episodes of atmospheric oxygenation happened just before explosions in biological diversity. We have spotty evidence of unicellular eukaryotes (cells with nuclei) before 2.4 billion years ago, but the first fossil evidence for large, diverse eukaryotic communities comes at 1.5 billion years ago. If you are a human, this is part of your history; humans are multicellular eukaryotes descended from one of these early unicellular pioneers. Multicellular animal life is an innovation that seems to have required more oxygen: animals don't appear in the fossil record until about 0.61 billion years ago, toward the end of the second pulse of oxygen.</p>
<p>It is, perhaps, not surprising that major evolutionary events in the eukaryotic family tree, including the origin and diversification of the animals, would be tied to or even driven by major changes in atmospheric oxygen abundance. Eukaryotes generally, and animals specifically, are oxygen lovers. As the subjects of Mayow and Priestly died to prove, we require oxygen for respiration. In general, the larger and more organizationally complex we are (for instance, a human versus a slime mold), the more oxygen we require.</p>
<p>But where did all the oxygen come from? Ultimately, it was produced by the bacterial equivalents of the plants in Joseph Priestley's experiment, a group of photosynthetic microbes called the cyanobacteria. These bacteria are the first and only organisms to have evolved the ability to produce oxygen by photosynthesis. In fact, plants are able to photosynthesize only because their cells harbor descendants of one of the early cyanobacteria. We call them chloroplasts and think of them as little cellular organs, but they are actually the great-great-great... granddaughters of a cyanobacterium that long ago gave up its independence in exchange for the stable environment inside a eukaryotic cell. In any case, photosynthesis is the only known geological process capable of producing oxygen at the rates required for the two pulses of atmospheric oxygenation. The first pulse was probably largely accomplished by cyanobacteria, while the second pulse was probably mostly associated with the cyanobacterial denizens of eukaryotic algae.</p>
<p>What is remarkable about all of this is the extent to which modern life and the atmosphere are products of each other's evolution. The tiniest of photosynthetic organisms played one of the most important roles in shaping the sky, and the sky helped to usher in the age of animals! As a Christian and a geobiologist, I do not believe that this relationship is anticipated or predicted by the Biblical creation accounts.</p>
<p>But then again, why should it have been? The original audience for these accounts would have found concepts like bacteria or even oxygen incomprehensible. The people for whom the Bible was originally addressed thought about origins primarily in terms of ongoing national conflicts and the current human condition. Faced with a variety of violent creation myths that reinforced national conflicts, Genesis said that the universe was created to be good, peaceful, and orderly by one god. It specifically listed things worshipped by other nations as creatures of that god, and in the climax of the creation account, Abraham was called by the same god to be a blessing to all the nations through Israel.</p>
<p>I am not claiming that the Bible cannot be read in a way that can shape us in real and meaningful ways today. In fact, for those who believe that the Bible is inspired, part of the meaning of inspiration has to be that the Bible is God's powerful word to both those with no concept of modern science (most of the world's population, both today and in the past) and to those deeply engaged in its practice. But, and this is a big but, we contemporary Americans read the Bible best when we are sensitive to the assumptions of the original audience, carefully observe how the Bible transformed those assumptions, and look for opportunities to do the same thing with our thinking.</p>
<p>I think that it is important for Christians to reflect on the view of origins that science has given us in light of the thinking evident in the Biblical creation accounts. We have to do this because science gives us a story that is inherently without philosophical or theological meaning; it is up to us to give it meaning by understanding it in relationship with our beliefs. For instance, some see the evolutionary history of life and the Earth and give that history meaning by elevating chance and necessity to the level of prime actors in their own modern creation account. This meaning is not inherent to the theory of evolution; it is supplied by an atheistic belief system external to the theory. I suggest that this view mistakes created things (chance and necessity) for the Creator.</p>
<p>Others have preferred to see the regularity of the universe as the action of an orderly God. This is an old approach to natural theology that was popular among many early scientists, and saw God as responsible for doing such things as maintaining the planets in consistent paths around the sun. Still others look for God in the unexplained. This is a newer approach that sees God as acting primarily in short bursts not explainable by the regular, orderly function of the universe. Looking for God in these ways is a little like trying to capture him in a bell jar, an approach that worked perfectly well with oxygen for Mayow, Priestley, and Lavoisier, but one that is unlikely to impress the Creator described in the Bible.</p>
<p>I prefer to see the same history in the light of a God who desires to share aspects of his nature with his creation, notably including his creativity. Just as he has made humans to be creators (with a little 'c'), he has given the rest of our world the gift of being instrumental in its own creation through the process of evolution. This surely must have been part of what God saw when he described his creation as good! It is my hope that the modern American church can learn to see the goodness of creation in things like the evolutionary history of life and the atmosphere, as well.</p>

<br><p class="intro">This post first appeared in October 2009</p>]]></content:encoded>
        <pubDate>Sat, 13 Oct 12 05:00:52 -0700</pubDate>
        <dc:creator>Mike Tice</dc:creator>
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        <title>Growing in Faith</title>
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        <guid>http://biologos.org/blog/growing&#45;in&#45;faith?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>As he endeavored to learn more, David was intrigued by Francis Collins book The Language of God because Francis did not present evolution as a rival theory to Christian faith, but as something that described God&apos;s method of creation.</description>
        <content:encoded><![CDATA[<br> </br>
<p>Growing up, David believed that Young Earth Creationism was <em>the</em> Christian position on origins and how God created.  As he endeavored to learn more, he was intrigued by Francis Collins book <em>The Language of God</em> because Francis did not present evolution as a rival theory to Christian faith, but as something that described God's method of creation. David studied biblical interpretation and found John Walton's scholarship to be tremendously helpful in understanding the original purpose and intent of the Genesis narrative.</p>

<p>Reflecting on his personal journey, David thinks that it is important that we don't oversimplify questions related to science and faith, but that we explore them deeply in order to understand science in a robust, Christian way. </p>]]></content:encoded>
        <pubDate>Fri, 12 Oct 12 05:00:28 -0700</pubDate>
        <dc:creator>David Buller</dc:creator>
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        <title>Willing to be Wrong</title>
        <link>http://biologos.org/blog/willing&#45;to&#45;be&#45;wrong?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/willing&#45;to&#45;be&#45;wrong?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>The debate is often not about evidence, but about making sure that others do not transgress our interpretive boundaries and insist that we&apos;re wrong. We&apos;ve bitten from the tree of knowledge and we love its taste.</description>
        <content:encoded><![CDATA[<h3>What we know</h3>

<p>Genesis is one of my favorite books of the Bible. I read through it probably once every few months and repeatedly grind my Hebrew language skills on its opening chapters. Unlike Leviticus (at least in the opinion of <em>most</em> people I know), the Genesis narrative is exciting and adventurous. Some of our favorite stories come out of the book: Noah and the Ark, The Tower of Babel, Abraham and Isaac, Joseph and the Coat of Many Colors, and so on.</p>

<p>But no story is perhaps as infamous and well known as the creation account (or accounts) as presented in Genesis 1-2. Almost every Christian or Jew, even those less than devout, know the opening words to the tale: “In the beginning, God created the heavens and the earth.” We know that God created the earth in six days. We know Eve was taken from Adam's rib for a companion. We know that God called the general creation “good”, the special creation of man “very good” and, at the very end of it all, took a day of rest (which I'm sure most of us would call “very good.”)</p>

<p>Of course, we know all of this. Yet we challenge it (and are challenged by it), continually, when we consider the variety of interpretations of how this story intersects the world as described by science. With Genesis, are we dealing with a literal scientific account, where “day” means 24-hours; are we dealing with metaphorical “days” in which epochs or periods of time or even processes are being described; or are we readers of a creation mythology from the Ancient Near East that doesn’t have anything directly to do with material origins? Interpretations go on and on, as anyone who has spent any time at all studying the creation debate knows. By and large, however, we can probably categorize Genesis interpreters into three camps: the Young Earth Creationists, the Old Earth Creationists, and the Theistic Evolutionists.</p>

<p>Now, I have the unique benefit of falling into all of these individual camps at one point or another in my life, sometimes even mixing them up. I have made a strong transition from being a die-hard Young Earth Creationist to being convinced that the evolutionary story is, in fact, the more substantiated and evidenced position. I say this with no pride, since my own transition involved many agonizing questions, a whole lot of reading, and a significant internal spiritual battle: what I believed about when and how the earth was created would not only change the way I read Scripture, it would also change certain aspects of how I viewed the Creator. </p>

<p>While I've certainly learned a lot of information on my journey, it was not an accumulation of facts that has kept me following Christ through all the ups and downs, but Jesus himself, and the knowledge that truth is not something which the Christian should find spiritually threatening.  Nevertheless, those same ups and downs—and my internalization of each of these views on creation in turn—has provided me with one simple realization about the debate over scripture and evolution: most of us are not so committed to finding the truth about Genesis and creation as we are to sustaining and maintaining our own interpretive boundaries and the boundaries of the communities which influence us. In other words, the debate is often not so much over Genesis—or even over whether we can all follow the same God when we believe different things about how he created—it's over our own ability to be right. I know this because admitting that I was wrong was the most difficult part of my own transition.</p>

<h3>Interpretive communities</h3>

<p>While I am pretty convinced of the truth of an evolutionary portrait of reality and an ANE reading of Genesis similar to that espoused by scholars like Peter Enns or Bruce Waltke, I can still make this claim about interpretive communities because my intention is <em>not</em> to dissuade others from debating the issues involved, but to ask that we simply recognize our own limits and check them as often as possible.  This is part of following Jesus, is it not? Unfortunately, vigorous debate often deteriorates quickly into screaming matches where proponents of one position or another simply are talking heads, speaking past each other and forgetting our fellowship in Christ. We play into the same interpretive competition that the Pharisee and Sadducee scribes were well known for, each claiming to have a proper interpretation of the Scriptures, but all the while forgetting that interpretive arguments matter exceptionally little if a genuine search for God is not at the forefront.  This is certainly not to insist that the discussions cease, but rather, to insist that these discussions can only be propelled forward if individuals—of whatever stripe—step outside of their own interpretive boundaries and communities and humbly present themselves before God, seeking His truth alone. It is to insist that “system maintenance” must die along with the self, because only then can we allow Scripture to interpret itself. Unfortunately (and this is an issue that goes <em>way</em> beyond the Genesis text), too many of us are more committed to a specific model than we are committed to seeking God’s truth, whatever inconvenience to us that truth proves to be. </p>

<p>In 2006, for instance, I heard a popular and well-trained Young Earth paleontologist make the following statement: “If all the evidence turns against young earth creationism, I will still believe it because that's what the Bible says.” I followed up with him in a conversation a year later over lunch and quickly realized that I did not misunderstand his statement.  For him, the parameters of his convictions were set in concrete and the truth of the overarching story of Christianity rested on these parameters not being crossed. In his view, the Bible absolutely and fundamentally teaches a universe which came into existence 6,000-10,000 years ago; to deny that is to deny Scripture, and if evidence turned up to the contrary one <em>must</em> not alter those parameters but, instead, search (perhaps in vain) for counter-evidence or be willing to live in blind faith. For this paleontologist, confident Christianity hinged on the stability of those borders of interpretation. Transition wasn't allowed. </p>

<p>But I have heard and read statements coming out of the two other camps of thought that share this kind of certainty over interpretation, too. There is a sense of doing injustice to scripture, thereby doing an injustice to Christianity, and, thereby again, doing an injustice to God if one strays from the preferred reading. One Old Earth Creationist remarked in a popular book that an interpretation of Genesis that allows for evolution is a “contradiction in terms” and it's an unfortunate thing to “blame God for it.” Genesis, in the mind of this thinker, specifically precludes any interpretation which leads to the sort of story evolution tells. To think otherwise is to “blame” God for something which he intentionally tells us is otherwise against his nature.</p>

<p>I have equally heard some theistic evolutionists deride—in a very spiritually shallow and personally offensive way—those who do not accept an evolutionary viewpoint. As one who went through an interpretive evolution on biological evolution, I can say confidently that I believe my own transition would have been much easier both intellectually and spiritually if not for feeling as if certain theistic evolutionists accused me of intentionally lying or being mentally ignorant. It seems that all three camps are at least sometimes plagued by the issue of pride—especially in the cases of a few strong advocates. But pride is nothing less than the cement by which interpretive barriers are built, helping them become unmovable walls that protect the interpretive communities within.<sup>1</sup> </p>

<p>On the other hand, one of the great benefits of the fall of positivism (or verificationism) and the rise of postmodernism was the realization that total objectivity among individuals is a false conception. And, since individuals make up communities, neither are camps of thought above error and immune from being wrong. Yet way too many Christians continue to approach Genesis as if we can interpret it on its own terms, completely and totally, without reference to our own location in history and culture. We're still functionally positivists. But it is an illusion that we’re above the interpretive fray, and we must realize time and again that we are subjective individuals, affected by a number of factors and people. We are deeply influenced by those that speak into us, those that we trust, and those that we find credible. As W. Randolph Tate writes, </p>


<blockquote>Interpretations...must be consistent with the established interpretive framework of the interpretive community. The worldview of the interpretive community sets the parameters within which interpretations are accepted or rejected.<sup>2</sup></blockquote>

<p>The Bible takes a slightly different angle and puts it this way: “for all have sinned and fall short of the glory of God.”  In other words, we are not objective data-interpreting individuals but fallen men and women, even as followers of Jesus. </p>

<p>So it’s when groups of folks line up on either side of an issue and make their positions part of their identity that the debate over interpreting Genesis reaches a near stalemate. It's communities against communities, PhDs against PhDs, experts against experts, and—perhaps more internally—interpretive parameters against interpretive parameters. The truth is that as long as we are first and foremost committed to maintaining the community in which we are involved, there will be very little chance of us getting at the real issues and the best conclusions, much less giving an adequate witness to our God, both Creator and Redeemer.</p>


<h3>New eyes, fresh air</h3>

<p>I mentioned earlier that I spent time in all three major camps of thought on this issue. I was a hard-lined Young Earth Creationist, debating on forums and writing creationist papers in college. I argued for the existence of modern-day dinosaurs, major flood geology, and so on. I was convinced I was right, that defending the truth meant digging my heels deeper into the sand. But two questions plagued my thoughts: first, I asked whether Christianity fell to pieces if I was wrong. Second, I asked whether I was committed to Christ or, rather, to myself and my interpretations. With that as my first major paradigm shift, I eventually came to accept an Old Earth view. I sat comfortably within the Old Earth view for several years, but the Lord was still at work in me, and, once again, brought those two questions to my mind.  Back to the books I went, back to the Bible I went, and back to prayer I went.  </p>

<p>Through months of extremely difficult and heart-rending transition, I found myself considering a particular reading of Genesis that I would have regarded as unacceptable as a YEC. But then I was confronted with this even more important point about Christianity: often God finds what is unacceptable to us very acceptable to Him! That included me, personally, and I felt the warmth of God’s grace flow over me. In the wake of that change of heart, people accused me of rejecting my background, my Christian education, and my interpretive communities. And, yet—whether I was right or wrong—I knew God accepted my path towards this new reading of Creation as a genuine search for Him. My spiritual struggle—contrary to what I thought while it was happening—was not a struggle to reject bad data and exegesis, it was a struggle to reject myself. </p>

<p>While the “facts” were important, that spiritual struggle was even more so for me. What was God showing me in the midst of it all? Was thinking differently about the creation making me appreciate the Creator less, or more?  Did reading Genesis differently mean only that I had been wrong, or that it was somehow less true? What did any of this have to do with my sense of calling to love and serve God and my fellow men?   In a way, I’m still figuring this out. But I can absolutely testify that the struggle transformed every single one of these questions. Indeed, for the first time, I believe I saw God as much <em>this-worldly</em> as <em>other-worldly</em>. I saw nature as intimately intertwined with itself, still being woven together by God’s hand. I saw Scripture as a beautiful expression of God’s desire that man should participate in creation. I saw that my fellow men and my fellow Christians were all on a journey, much the way I was. And I saw myself as a flawed, stubborn, and prideful man, yet forgiven for the times I’ve pitted myself and my presuppositions about Scripture against God, its author. </p>

<p>As settled as I am now, I have not forgotten that the common ribbon which ties together all of these transitions is my commitment to keep asking questions within my own circle, too—realizing that God still has much to teach all of us.  I have learned the continuing importance of stepping outside of my camp and making sure I haven’t become merely a product of or a willing prisoner to thinking a certain way, unwilling to consider that it and I might be incorrect. I came to realize that <em>everyone</em> (including myself, of course) has stories and life experiences that become the framework in which they read Genesis 1-2.  And if I stopped pretending that I, myself, could be perfectly objective, then I also had to stop pretending that those in the community that I trusted were <em>necessarily</em> objective, themselves. </p>

<p>Ultimately, I had to be willing to be wrong and to see that my friends might be wrong, too. That’s not something that any of us are “naturally” very good at, but it is possible when we realize that the world does not depend on <em>us</em> being right, but upon Jesus being right. For me, seeking truth rather than presupposition requires that we all be able to approach the communities that have influenced us deeply, and ask not just “what” they say but “why” they say it.  We all have to guard our hearts even more than our heads.  Frequently reminding myself to walk back to the edge of my own camp—to follow Jesus’ example and withdraw to a solitary place—has shown me that there is room to breathe outside our familiar interpretive parameters.  At certain times, I have found it to be the most refreshing air I've ever tasted.</p>

<h3>Notes </h3>

<p class="date">1. Though, admittedly, the theistic evolutionists tend to have a greater sense of leeway when it comes to how the claims of Genesis 1-2 affect Christianity as a whole. It would be an odd thing to say that to <em>not</em> interpret Genesis 1-2 as an evolutionary metaphor is to reject Christianity. As far as I know, most Christian evolutionists are very much willing to acknowledge that Young and Old Earth Creationists are still within appropriate spiritual bounds, even if not scientific ones. It seems to me that if individual theistic evolutionists choose an issue about which to be rigid, it’s the Fall and the existence of Adam.<br />

2. Tate, W. Randolpy. <em>Biblical Interpretation: An Integrated Approach</em>. Peabody, MA: Hendrickson, 2008, p 222.</p>]]></content:encoded>
        <pubDate>Sat, 29 Sep 12 14:22:49 -0700</pubDate>
        <dc:creator>Randal Hardman</dc:creator>
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        <title>Series: Decoding ENCODE</title>
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        <guid>http://biologos.org/blog/series/decoding&#45;encode&#45;series?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>The BioLogos Foundation explains to the findings of the Encyclopedia of DNA Elements (ENCODE) project and responds to the claims that its discoveries challenge the theory of evolution, especially regarding so&#45;called &quot;junk DNA&quot;.</description>
        <content:encoded><![CDATA[<p>In 2003, under the leadership of BioLogos founder Francis Collins, the Human Genome Project sequenced the full human genome, showing us for the first time the order of the 3.2 billion chemical “bases” that make up the rungs of DNA’s double helix structure. The project identified and mapped 23,000 genes that code for proteins, but those genes make up less than 2% of the total sequence—far fewer than originally predicted, given the complexity of humans. While many non-coding sequences were identified as having function as well, there were still vast swaths of the genome that had no obvious function. In fact, what was known about certain classes of sequences suggested that they had no functional role for humans—such as the sequences identified as either transposons or transposon fragments that make up nearly half of our genome. These sorts of sequences seemed to fit into what was popularly known as the “junk DNA” category. </p>

<p>With the complete genome sequence in hand, we knew the sequence and location of our genes, but what we didn’t know was how all those genes are regulated: how do the trillions of cells in our bodies know when to turn on or off all those genes?  How do the hundreds of distinct cell types develop and function together, when they are all running on the same DNA “operating system?”  </p>
<p>That’s where the ENCODE (short for Encyclopedia of DNA Elements) project comes in. Launched in September 2003, shortly after the announced completion of the Human Genome Project, the goal of the ENCODE project is “to build a comprehensive parts list of functional elements in the human genome, including elements that act at the protein and RNA levels, and regulatory elements that control cells and circumstances in which a gene is active.” In other words, the project seeks to understand how the genome “works.”</p>

<p>Early this month, researchers from ENCODE released more than thirty papers presenting their findings. During a <em>Science</em> magazine <a href="http://news.sciencemag.org/sciencenow/2012/09/live-chat-figuring-out-what-dna.html">online chat</a>, the project’s data coordinator, Ewan Birney, explained the outcome:</p>

<blockquote>The ENCODE project aimed to start our understanding of how the human genome works. We know that (nearly) all the information that determines a human is in the genome, as we all start off as single cell with this DNA. However, we had a patchy understanding of how it works, in particular away from protein coding genes.<br /><br />

To work out how the genome works, we used the fact there are many tiny machines (proteins and RNA - RNA is very like DNA) in each of our cells which know how to "read" parts of the genome. By monitoring where these little molecular machines are on the genome, or how parts of the DNA are copied into RNA (there are quite a few different types of RNA as well), we start to gain some insight into the genome.<br /><br />

We did many such experiments, across different cell types (eg, one cell type was very similar to a liver cell type; another was very similar to a white blood cell). This way not only can we see what is similar, we can also see differences between these cell types.<br /><br />

There is a lot more to get to know and understand here - this is definitely closer to the start than the end. But it is a substantial amount of data, and analysis, to start on this journey.</blockquote>

<p>According to the abstract of one of the <a href="http://www.nature.com/nature/journal/v489/n7414/full/nature11247.html">lead papers</a> from <em>Nature</em>, this extraordinary glut of data “enabled us to assign biochemical functions for 80% of the genome, in particular outside of the well-studied protein-coding regions.”  Only 2% of the genome codes for proteins, but 80% or more has <em>some</em> biochemical function.  As a <em>Science</em> <a href="http://www.sciencemag.org/content/337/6099/1159">news article</a> put it, these 30 papers “sound the death knell for the idea that our DNA is mostly littered with useless bases.”</p>

<p>The pro-Intelligent Design organization The Discovery Institute has heralded the discovery as the “demise of junk DNA.”  Casey Luskin writes for their <a href="http://www.evolutionnews.org/2012/09/junk_no_more_en_1064001.html">blog</a> <em>Evolution News</em>:</p>

<blockquote>Let's simply observe that it provides a stunning vindication of the prediction of intelligent design that the genome will turn out to have mass functionality for so-called "junk" DNA. ENCODE researchers use words like "surprising" or "unprecedented." They talk about of how "human DNA is a lot more active than we expected." But under an intelligent design paradigm, none of this is surprising. In fact, it is exactly what ID predicted.</blockquote>

<p>The extent to which the ENCODE project been able to identify function has been surprising—even exhilarating—though scientists have for some time been getting glimpses of the many ways in which segments of DNA can be “active.”  Even in 1970 biologists knew that some non-coding DNA had function, and by 2003 there was a large body of work demonstrating that many non-coding elements acted as promoters, enhancers, insulators, and so on. Indeed, in recent years many have come to appreciate the fact that “junk” was never really an appropriate metaphor in the first place.   Still, because sequencing of multiple genomes has shed such extraordinary light on key evolutionary mechanisms, many geneticists have focused on function primarily in terms of which regions do or do not contribute to the evolutionary fitness of their host, rather than whether they were merely "doing something" biochemically.  What the impressive ENCODE project has done is open a treasure trove of new information that can only accelerate the pace at which researchers are able to explore the incredible subtlety and complexity of DNA, and refine the very concept of “functionality.” </p>

<p>So with all this in mind, is ENCODE a stunning victory for ID, as Luskin believes? Bryan College biologist Todd Wood thinks not.  He <a href="http://toddcwood.blogspot.co.uk/2012/09/everyones-excited-about-encode.html">writes</a>, “I don't think that function equates to design, nor do I think that design requires or predicts function.  They're not the same thing… my understanding of function does not require me to hypothesize God (or an anonymous designer, if you must) as the proximal cause.”  </p>

<p>We agree.  Indeed we would go on to say that evolution and design are not mutually exclusive.  So while finding function is not sufficient to prove design, recognizing that function has arisen by way of evolution does not indicate that God was not at work.  We at BioLogos believe God providentially works out his purposes—his designs—<em>through</em> the elegant processes of evolution, not in opposition to them.</p>

<p>Amazing as the new data are, it only strengthens and enhances our evidence for evolution.  While much of the genome is “doing something” biochemically, it is still likely that the majority of the sequence is evolutionarily neutral (Senior Fellow Dennis Venema discusses the evidence for this “neutrality” in a <a href="http://biologos.org/blog/understanding-evolution-is-there-junk-in-your-genome-part-1">post</a> on our site, including a striking comparison between 29 different mammal genomes and the human genome).  In fact, another  ENCODE researcher participating in the <em>Science</em> magazine chat, John A. Stamatoyannopoulos of the University of Washington School of Medicine, thinks the findings align beautifully with evolutionary theory:
</p>

<blockquote>ENCODE's data provide a unique and powerful window through which to view evolutionary change. We can see those changes directly by lining up the genome sequences of many different organisms -- these line-ups have revealed millions of regions where all the genomes agree, indicating sequences that have been specially preserved by evolution while others have decayed away (ie freely changed their letter codes). We now see that a large proportion of these 'conserved' regions are lighted up by ENCODE annotations, indicating that they are marking spots in the genome that contain important instructions for cell function.</blockquote>

<p>We’ve discussed “junk” DNA previously, including a multi-part series by Dennis Venema, and we’ve received many emails over the past few days asking for our comments on the ENCODE findings. On Monday and Tuesday, Dr. Venema will begin to offer his own thoughts on ENCODE.</p>

<p class="intro">A special thanks goes to Darrel Falk, Mark Sprinkle, Kathryn Applegate, Dennis Venema, and Tom Burnett for their contributions to this post.</p>]]></content:encoded>
        <pubDate>Wed, 26 Sep 12 05:00:35 -0700</pubDate>
        <dc:creator>Stephen Mapes, Dennis Venema</dc:creator>
        <!--<dc:date>Sep 26, 2012 05:00</dc:date>-->
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