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        <title>Custom Feed &#45; The BioLogos Forum</title>
    <link>http://biologos.org/resources/find/any/Human Origins,Randomness/sort&#45;by&#45;Newest?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
    <description>This is a custom feed of BioLogos resources. Make a new feed at http://biologos.org/resources/find</description>
    <dc:language>en</dc:language>
    <dc:rights>Copyright 2013</dc:rights>
    <dc:date>2013-06-18T15:12:01-08:00</dc:date>    
    
    

            
            
        
      <item>
        <title>Series: The Human Fossil Record</title>
        <link>http://biologos.org/blog/series/human&#45;fossil&#45;record?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/human&#45;fossil&#45;record?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In this series, James Kidder provides an intriguing study on transitional fossils and the evolutionary history of modern humans.  He begins by discussing the fossil record, explaining how new forms are classified. He then explains the physically distinguishing trait of humankind—bipedalism.  From the discovery of Ardipithecus, the earliest known hominin, to the australopithecines, the most prolific hominin, Kidder focuses on the discovery, the anatomy, and the interpretation of these ancestral remains.</description>
        <content:encoded><![CDATA[<p class="intro">This blog was originally posted on December 10, 2010. We think it was an important one.  Note though that it was posted shortly before the discovery of <a href="http://biologos.org/blog/a-geneticists-journey.html" target="_blank">Denisovans.</a>  So now one more red bar needs be added to the figure above.</p>

<h3>Transitional Fossils</h3>

<p>Some time ago, the Discovery Institute’s Casey Luskin <a href="http://www.evolutionnews.org/2010/03/smithsonians_new_human_origins033371.html" target="_blank">commented</a> on the human origins exhibit at the Smithsonian Institution, suggesting that palaeoanthropologists use evolutionary theory to describe the progression of the human lineage even when they don’t have transitional fossils with which to work.  He writes:</p>

<blockquote><p>What's ironic, however, is that if you ask the question How Do We Know Humans Evolved? the answer you’re given is, “Fossils like the ones shown in our Human Fossils Gallery provide evidence that modern humans evolved from earlier humans.” So whether you find fossils or you don’t, that’s evidence for evolution.</p></blockquote>

<p>Indeed, it has become an article of faith for those espousing both the young earth creation (hereafter YEC) model and many who hold to the intelligent design model that transitional fossils do not exist and therefore evolution has not taken place.  Support for this position usually entails attacking the weak areas of the fossil record, where burial processes have left us little with which to work, or the creation of straw men arguments in which transitional fossils are defined in such a way that none could ever be found.  Often this centers on the concept of “missing link,” a term that is habitually used in the popular press and young earth creation and intelligent design literature when referring to fossil remains but which has little to no meaning for biologists or palaeontologists.  As Ahlberg and Clack (Ahlberg and Clack 2006) write:</p>

<div class="see-also" id="phylo" style="display:none;">Phylogenetics is the study of evolutionary relatedness among organisms.</div>

<blockquote><p>But the concept has become freighted with unfounded notions of evolutionary ‘progress’ and with a mistaken emphasis on the single intermediate fossil as the key to understanding evolutionary transitions. Much of the importance of transitional fossils actually lies in how they resemble and differ from their nearest neighbours in the <a onmouseover="toggle_visibility('phylo');" onmouseout="toggle_visibility('phylo');">phylogenetic</a> tree, and in the picture of change that emerges from this pattern.</p></blockquote>

<p>Contrary to common misconceptions, the fossil record does not record one single lineage for any family of organisms but rather a series of branches, with many related species coexisting synchronously.  Darwin hypothesized that the evolutionary record reflected this bushiness and drew such a diagram in his journal.    At the time, though, he had little in the way of fossil evidence to back up this position.  Much has changed since his day.</p>  

<p align="center"><img src="http://biologos.org/uploads/static-content/kidder_Figure_1.jpg"></p>

<p>An analogy for understanding this “bushiness” was best described by Prothero and Buell (Prothero and Buell 2007).  They suggest that the reader consider his or her own genealogy.  You and your siblings are the direct descendents of your parents and, while you are similar to them, each of you has different characteristics not shared with them as well as characteristics that you do share.  Your parents have siblings as well (your aunts and uncles), and your grandparents are their last common ancestors. These siblings have their own children (your cousins), who have different and similar traits relative to their parents.  They are broadly recognizable as being related to you (“oh, I see you have Aunt Edna’s nose”) but three or four generations out, they will become less and less so.  These are the “nearest neighbours” that Ahlberg and Clack describe. In this analogy, each of these cousins represents a transitional form from what was (your grandparents) to what <em>will be</em> down the road.</p>

<p align="center"><img src="http://biologos.org/uploads/static-content/kidder_figure_3.jpg"></p>

<p>For example, no one would confuse a frog with a salamander but if you trace the fossil record of each back in time, eventually you encounter a fossil, <em>Gerobatrachus hottoni</em> which was recently discovered (Anderson et al. 2008) that is best described as a “frogamander,” having the basal characteristics of both frogs and salamanders. Had we seen such an animal at the time, it is likely we would not have found it remarkable because it would have resembled the species around it.  One lineage eventually diverged into frogs, salamanders and other amphibians.  Most (just like Darwin proposed in his tree diagram with the little hatch marks at the tip of many branches) went extinct.</p>

<p align="center"><img src="http://biologos.org/uploads/static-content/kidder_Figure_2.jpg"></p>

<h3>Taxonomy and the Beginnings of Human Origins</h3>

<p>All life is classified based on a system devised by Carolus Linneaus in 1735 in his remarkable work <em>Systema Naturae</em>.  This system gives all recognized species an individual place based on a system of hierarchy. The study of classification is known as taxonomy.  A taxonomic ranking for humans would be this:</p>

<p align="center"><img src="http://biologos.org/uploads/static-content/kidder_figure_5.jpg"></p>

<p>When a fossil is excavated, the first thing that the palaeontologist does is make a taxonomic assessment of where it fits in a sequence of known fossils.  Traits that are shared with other like species or genera are referred to as primitive traits.  Examples of this in humans are five fingers and the presence of three arm bones.  We share this with all mammals.  Traits that are new or are not shared with other like species are referred to as derived traits.  Examples of this in humans are the skeletal changes in the pelvis and the foot to allow for walking upright.  We do not share these with any other primates.</p>

<p>Transitional fossils in the human fossil record are distinguished at both the genus and species level.  This group includes the extinct genera <em>Ardipithecus</em> and <em>Australopithecus</em> and the current genus <em>Homo</em>.  All species except <em>Homo sapiens</em> are extinct.  Much of the recent study of early humans focuses on the transition from <em>Ardipithecus</em> (‘Ardi’) to <em>Australopithecus</em> (‘Lucy’ and similar fossils) and from <em>Australopithecus</em> to <em>Homo</em>, the genus that led eventually to us.  While each of the australopithecine species identified in the fossil record has derived characteristics that separate them from their ancestors and from each other, only one led to the genus <em>Homo</em>.</p>

<p align="center"><img src="http://biologos.org/uploads/static-content/kidder_Figure_4.jpg"></p>

<p>In future posts, I will describe the evidence for human evolution and why this evidence is compelling.  It suggests that we have had a long, varied history filled with great leaps of change, crushing defeat, and eventual expansion into all areas of the globe.</p>

<h3>Notes</h3>
<p>Ahlberg, P. & J. Clack (2006) A firm step from water to land. <em>Nature</em>, 440.</p>
<p>Anderson, J. S., R. R. Reisz, D. Scott, N. B. Frobisch & S. S. Sumida (2008) A stem batrachian from the Early Permian of Texas and the origin of frogs and salamanders. <em>Nature</em>, 453, 515-518.</p>
<p>Prothero, D. & C. Buell. 2007. <em>Evolution: What the fossils say and why it matters</em>. Columbia Univ Pr.</p>
]]></content:encoded>
        <pubDate>Wed, 29 May 13 08:00:12 -0700</pubDate>
        <dc:creator>James Kidder</dc:creator>
        <!--<dc:date>May 29, 2013 08:00</dc:date>-->
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        <title>Series: Understanding Randomness</title>
        <link>http://biologos.org/blog/series/immunity&#45;and&#45;evolution&#45;the&#45;same&#45;story?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/immunity&#45;and&#45;evolution&#45;the&#45;same&#45;story?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In this series, Kathryn Applegate addresses the concern that randomness implies the absence of God&apos;s activity and involvement in the natural world.  She begins by clearing up some common misconceptions about the concept of &quot;randomness&quot;, and later focuses on the mechanisms of the immune system to demonstrate that God works through random processes to preserve life.  Far from being an indication of a &quot;godless&quot; universe, one might conclude that randomness is one of God’s favorite mechanisms for creating and sustaining life!</description>
        <content:encoded><![CDATA[<p>You hear it all the time: “That’s so random!” When used by people of my generation, the word “random” can simply mean “cool” or “surprising.” Or it can mean something like “disconnected,” as in the phrase, “I had a random thought” (which returns 189,000 hits on Google, by the way—random!).</p>

<p>Despite this usage, most of us know that randomness has something to do with probability, and that it often implies a lack of conscious intentionality. But what do mathematicians and scientists mean when they say something is random? Can a random process lead to an ordered, even predictable outcome? Is there evidence that God makes use of random processes to fulfill his creative purposes?</p>

<p>These are big questions, and we won’t address them all today. But I think randomness is an important topic to cover for two reasons: 1) it is integral to many processes in biology (and math, physics, chemistry, etc.), and 2) it is commonly misunderstood to be incompatible with Christianity.</p>

<p>As I said above, most of us know that randomness has something to do with probability. If you pick a card “at random” from a shuffled deck, you have a small probability of drawing an ace (4 out of 52, or a 7.7% chance). If you flip a coin, you have an equal probability of getting heads or tails.</p>

<p>Randomness also seems to imply a lack of intentionality or purposefulness. After all, you might hope for an ace when you draw a card, but you can’t choose one on purpose. You might call heads when you flip a coin, but you can’t know beforehand what the outcome will be. Thus the outcome is <em>indeterminate</em>, but is it purposeless? Not necessarily. Indeterminacy simply means the result cannot be predicted from the outset.</p>

<p>It should be noted that indeterminacy does not imply that God does not have foreknowledge of future events. Christians ought not to be uncomfortable with the idea of God interacting with his creation through chance. We often describe a seemingly-random (i.e. unplanned by us) sequence of events as being “providential,” or planned by God.</p>

<p>In biology, it is very hard or impossible to calculate precise probabilities for most processes, so when we say a process is random, we typically mean it is extremely unpredictable. Eventually we will discuss randomness within biological evolution, but first we must consider some simpler processes, like the self-assembly of a virus.</p>

<p>Viruses are remarkably efficient entities. Coiled tightly within a protein-based shell is a small amount of DNA needed for self-replication. The shell, called a capsid, is made of many repeating protein subunits and is therefore highly symmetrical (see figure). Important biomedical insights have certainly been gleaned from structural studies of viruses, but viruses also teach us about the emergence of order from non-order.</p>

<p>The virus life cycle has four main steps: 1) enter a host cell, 2) hijack the cell’s replication and translation machinery to make many copies of itself, 3) assemble into many virus particles, and 4) exit the cell to invade another host.</p>

<p>When I first learned about this process, I found it very hard to believe it just “happens.” The idea that a bunch of molecules bumping into each other inside a crowded cell could spontaneously assembly into a fully-functional virus seemed a bit far-fetched. Many viral capsids have over 100 protein subunits that must interact with each other in just the right way, or it won’t work. Surely there must be something driving this process, right?</p>

<p>There is! Random motion. I had to see it to believe it. I distinctly remember sitting in class during my first year of graduate school when the professor demonstrated self-assembly of a virus using a 3D <a href="http://models.scripps.edu/" target="_blank">model</a> as shown in the following video. In less than 30 seconds, you can watch a jumbled heap of proteins become a beautifully ordered structure.</p>

<p align="center"><object height="385" width="480"><param name="movie" value="http://www.youtube.com/v/X-8MP7g8XOE&amp;hl=en_US&amp;fs=1&amp;rel=0" /><param name="allowFullScreen" value="true" /><param name="allowscriptaccess" value="always" /><embed allowfullscreen="true" allowscriptaccess="always" height="385" src="http://www.youtube.com/v/X-8MP7g8XOE&amp;hl=en_US&amp;fs=1&amp;rel=0" type="application/x-shockwave-flash" width="480"></embed></object></p>

<p>As the narrator explains, sub-assemblies form and break apart en route to the most stable structure, the full capsid. As the sub-assemblies begin to form, further associations with free subunits become more favorable and as a result occur rapidly, while the final steps may take considerably longer. While the subunits in the model are rigid, in reality the proteins take on multiple conformations, allowing the capsid to “breathe.”</p>

<p>Amazing as it is, the system we just considered—one virus capsid in a jar—is pretty simple. One wonders how self-assembly can happen in a crowded cell, where there are countless other molecules diffusing around, potentially getting in the way. We can’t directly <em>see</em> how it happens in a cell, but we can reconstitute the process in a test tube using different combinations of constituent molecules.</p>

<p>Consider two viruses, where each protein subunit in one virus is the mirror image of the corresponding subunit in the other. Putting the two viruses together by hand would be pretty tricky, because the constituent parts look so similar. But random motion can do the job in short order:</p>

<p align="center"><object height="385" width="480"><param name="movie" value="http://www.youtube.com/v/YbpTusoDEgA&amp;hl=en_US&amp;fs=1&amp;rel=0" /><param name="allowFullScreen" value="true" /><param name="allowscriptaccess" value="always" /><embed allowfullscreen="true" allowscriptaccess="always" height="385" src="http://www.youtube.com/v/YbpTusoDEgA&amp;hl=en_US&amp;fs=1&amp;rel=0" type="application/x-shockwave-flash" width="480"></embed></object></p>

<p>From this model, we can see clearly, in real-time, how distinct complex structures can arise from their parts randomly interacting with one another. Many large viruses also use special scaffolding proteins to assist in the assembly process, and some even use their own genomes as a scaffold. In addition, two closely-related viruses that happen to infect the same cell can exchange parts to create a new virus. This is one way viruses can evolve quickly to evade the host’s immune system.</p>

<p>Here we have seen how viruses demonstrate a principle inherent in God’s world—that order can emerge out of chaos from random processes. In my next post, we will look at some other biological processes that make use of—rather, depend on—randomness. This will set the stage for us to see that such processes can not only assemble a structure within seconds or minutes, but also generate complex, information-bearing molecules over billions of years. Even though the freedom inherent in nature sometimes produces <em>un</em>intelligently-designed structures (like viruses, which can kill us), we see that God has made, and continues to oversee by his providence, a <em>good</em> creation that, at least in part, is capable of creating itself.</p>

<p class="intro">Next weekend, we’ll continue this series about randomness and God’s divine will. Up next: how God created the body to heal itself, and how can random mutations can be both harmful and benign.</p>]]></content:encoded>
        <pubDate>Sat, 23 Mar 13 06:00:44 -0700</pubDate>
        <dc:creator>Kathryn Applegate</dc:creator>
        <!--<dc:date>Mar 23, 2013 06:00</dc:date>-->
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            <item>
        <title>Humanity as and in Creation</title>
        <link>http://biologos.org/blog/humanity&#45;as&#45;and&#45;in&#45;creation?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/humanity&#45;as&#45;and&#45;in&#45;creation?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Christian theology asserts that humans are spiritual creatures, a unity of body and spirit or “soul,” integrated, not reducible downwards to mere matter or upwards to mere spirit.</description>
        <content:encoded><![CDATA[<p>The second chapter of Genesis offers an enduring image for the creation of humanity: “the LORD God formed a man from the dust of the ground and breathed into his nostrils the breath of life, and the man became a living being.”</p>

<p>What does it mean for humanity to be created “from the dust of the ground?”</p>

<p>In many ancient Mesopotamian creation stories, human beings were depicted as deriving from some physical part of the gods. Often this was the result of conflict: humans arose from the blood, flesh or tears of gods slain by other gods. Humans created in this fashion were supposed to serve the gods by performing menial work that the gods had tired of doing themselves. The lot of humanity, then, was one of violence and servitude.</p>

<p>In the Israelite creation stories reflected in Genesis 1 and 2, however, humans are made from the ordinary material of creation: “dust.” Humans are made of earth-stuff, not god-stuff.</p>

<p>At first glance, it may seem that this lowers the status of the human creature. We might ask the question raised by Eliphaz in the book of Job:</p>

<blockquote><p>Can a mortal be more righteous than God?<br />
Can even a strong man be more pure than his Maker?<br />
If God places no trust in his servants,<br />
if he charges his angels with error,<br />
how much more those who live in houses of clay,<br />
whose foundations are in the dust, who are crushed more readily than a moth! (Job 4:17-19)</p>
</blockquote>

<p>Indeed, our humble origins ought to remind us of the fragility of our lives. As the Psalmist says,</p>

<blockquote><p>You turn people back to dust, saying, “Return to dust, you mortals.”<br />
A thousand years in your sight<br />
are like a day that has just gone by,<br />
or like a watch in the night.<br />
Yet you sweep people away in the sleep of death—<br />
they are like the new grass of the morning:<br />
In the morning it springs up new,<br />
but by evening it is dry and withered.</p>
</blockquote>

<p>The elements of which our bodies are made are ordinary and abundant. Science tells us that approximately ninety-three per cent of the mass in a living human body is comprised of elements first formed through nuclear fusion in the hearts of stars. Through almost unimaginably vast and ancient cycles of stellar formation and supernova explosions, this “stardust” of elements has been spread throughout the universe. It is as though God scattered the stars across space and time to seed the universe for life, including your life and mine. And we are thereby inseparably connected to each other, to the air we breathe, to the ground we tread, to all the creatures that fill the skies and crawl upon the earth and teem in the seas, to the depths of all the heavens. We are not transcendent of creation. We are creatures.</p>

<p>Yet we are creatures into which God breathed the “breath of life.” We are stardust and more than stardust. We are not reducible to our constituent chemicals. A “man” or a “woman” is not just a gooey sack of water, carbon and trace elements. Hydrogen, oxygen and carbon are not aware of their own existence. These elements cannot reason or pray or love or write poems. Conjunctions of these elements cannot carry any persistent identity across time. They do not exercise will or intentionality or agency. They are not “selves.”</p>

<p>Most of the cells in a human body are in constant flux: aging, dividing, dying, being replaced. The surface layer of human skin is renewed completely about every two weeks. An adult’s skeleton is entirely remade over approximately ten year periods. It may be that only the neurons of the cerebral cortex and a few other types of cells persist throughout the lifetime of a human body. And eventually, it all does return to “dust.”</p>

<p>Yet we think of ourselves as persisting over time, as comprising an “identity,” a “self.” Perhaps the cerebral cortex provides the stable biological platform for identity and selfhood, but something new emerges from the chemical-electrical soup, new patterns of organization, a different level of causation. We can even make choices that reshape ourselves, both physically and psychologically. The very wiring of our brains changes when we make conscious choices. Mind is both shaped by matter and supervenes on matter.</p>

<p>Materialists who wish to collapse all of human identity into brain chemistry overstep the bounds of “science.” A fundamental principle of scientific practice is testability: is it possible to demonstrate empirically whether a proposition is false ? As Saint Augustine observed many centuries ago, the fact that I acknowledge I could be “wrong” about something means that I am a “self” who is capable of making real choices about things that are in fact true or false. “<em>Si fallor, sum</em>” Augustine said – if I can doubt, if I can be wrong, then I must exist. One who is a true materialist “all the way down” cannot test his or her materialism. There is no possibility of “being” right or wrong, indeed no possibility of “being” – there is nothing but chemistry.</p>

<p>Spiritualists who wish to degrade matter in favor of the soul or spirit likewise are not expressing a Christian anthropology. Indeed, one of the first heresies that encountered the early Christian church was Gnosticism. A core belief of Gnosticism was that matter, including the human body, was essentially evil. Salvation for the Gnostics involved the soul’s escape from the prison of embodiment and materiality. The Gnostics treated the body either with disdain – engaging in extreme ascetic practices – or with antinomian abandon – engaging in extreme sexual license. Either way, their practices were rooted in the belief that matter and the body were unimportant. It’s easy to see how this view continually creeps into both our popular culture and our Church cultures.</p>

<p>Christian theology asserts that humans are spiritual creatures, a unity of body and spirit or “soul,” integrated, not reducible downwards to mere matter or upwards to mere spirit. Perhaps there is no better way to bring these themes together than with a Psalm — here is Eugene Peterson’s paraphrase of Psalm 139 in The Message:</p>

<blockquote><p>God, investigate my life; get all the facts firsthand.<br />
I’m an open book to you;<br />
even from a distance, you know what I’m thinking.<br />
You know when I leave and when I get back;<br />
I’m never out of your sight.<br />
You know everything I’m going to say<br />
before I start the first sentence.<br />
I look behind me and you’re there,<br />
then up ahead and you’re there, too—<br />
your reassuring presence, coming and going.<br />
This is too much, too wonderful—<br />
I can’t take it all in!</p>

<p>Is there any place I can go to avoid your Spirit?<br />
to be out of your sight?<br />
If I climb to the sky, you’re there!<br />
If I go underground, you’re there!<br />
If I flew on morning’s wings<br />
to the far western horizon,<br />
You’d find me in a minute—<br />
you’re already there waiting!<br />
Then I said to myself, “Oh, he even sees me in the dark!<br />
At night I’m immersed in the light!”<br />
It’s a fact: darkness isn’t dark to you;<br />
night and day, darkness and light, they’re all the same to you.</p>

<p>Oh yes, you shaped me first inside, then out;<br />
you formed me in my mother’s womb.<br />
I thank you, High God—you’re breathtaking!<br />
Body and soul, I am marvelously made!<br />
I worship in adoration—what a creation!<br />
You know me inside and out,<br />
you know every bone in my body;<br />
You know exactly how I was made, bit by bit,<br />
how I was sculpted from nothing into something.<br />
Like an open book, you watched me grow from conception to birth;<br />
all the stages of my life were spread out before you,<br />
The days of my life all prepared<br />
before I’d even lived one day.</p>
</blockquote>
]]></content:encoded>
        <pubDate>Fri, 01 Mar 13 07:00:07 -0800</pubDate>
        <dc:creator>David Opderbeck</dc:creator>
        <!--<dc:date>Mar 01, 2013 07:00</dc:date>-->
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        <title>Denisovans, Humans and the Chromosome 2 Fusion</title>
        <link>http://biologos.org/blog/denisovans&#45;humans&#45;and&#45;the&#45;chromosome&#45;2&#45;fusion?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/denisovans&#45;humans&#45;and&#45;the&#45;chromosome&#45;2&#45;fusion?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>The Denisovans, an extinct hominid group that interbred with modern humans, made the news again lately with the publication of a more detailed study of their genome. One of the many interesting findings was that the Denisovans share the same chromosome 2 fusion that modern humans have.</description>
        <content:encoded><![CDATA[<br> </br><p>The Denisovans, an extinct hominid group that interbred with modern humans, made the news again lately with the publication of a more detailed study of their genome. One of the many interesting findings was that the Denisovans share the same chromosome 2 fusion that modern humans have. In this post, I review what we know about the origins of human chromosome 2, and then discuss the new Denisovan findings and their implications. </p>

<h3>The origins of human chromosome 2: a brief review</h3>
<p>Though I have discussed the evidence for a fusion event leading to human chromosome 2 before, perhaps a brief review of the evidence is in order. The human genome is made up of 23 pairs of chromosomes (for a total of 46 chromosomes). This makes us something of an oddity among living great apes, all the rest of whom  have 24 pairs of chromosomes (for a total of 48). Given that there are many independent lines of evidence that support the conclusion that we share a common ancestor with other great apes, this poses something of a conundrum: how is it that our species arrived at this specific chromosome number? If we were to represent this “problem” on a phylogeny, or tree of relatedness, it would look something like this (not to scale):</p>

<p class="caption-center"><img src="http://biologos.org/uploads/static-content/denisovans_fig_1.jpg" alt="" height="357" width="434"  /></p>
 
<p>Our closest living relatives, chimpanzees and bonobos, both have 48 chromosomes, as do all other great apes such as gorillas and orangutans. This pattern has one of two explanations, one of which is much more likely than the other. Either the common ancestor to these species had 48 chromosomes, and there was an event that reduced that number to 46 specifically on the lineage leading to humans (option A), or the common ancestor species had 46 chromosomes, and there were independent, repeated events that increased chromosome number in all other great ape species (option B). We can compare these options by placing the required event(s) on the phylogeny (again, not to scale): </p>

<p class="caption-center"><img src="http://biologos.org/uploads/static-content/denisovans_fig_2.jpg" alt="" height="300" width="570"  /></p>
 
<p>It should be obvious that the option that requires the fewest events is the more likely one – in this case option A with an event that reduces chromosome number in the lineage leading to humans. The other option, that of repeated, independent events to increase chromosome number, remains a formal, but unlikely, possibility. Events that reduce chromosome number are not frequent occurrences, so Option A is more likely than Option B.</p>

<p>We can also find further support for Option A, because it predicts a specific type of event, namely one that reduces chromosome number. Since <em>loss</em> of a large amount of chromosomal material is almost always detrimental, we need an event that reduces chromosome number without losing information. One way for this to happen is for two chromosomes to fuse together and become one. Initially, this event would produce an individual with 47 chromosomes, where two different chromosomes get stuck together. Contrary to what is often assumed, this individual would be fertile and able to interbreed with the others in his or her population (who continue to have 48 chromosomes). In a small population, over time, two relatives who both have one copy of the fusion chromosome may mate and produce some progeny with two copies of the fused chromosome, or the first individuals with 46 chromosomes. Since either a 48-pair set or a 46-pair set is preferable for ease of cell division, this population will either eventually get rid of the fusion variant (the most likely outcome), or by chance will switch over completely to the “new” form, with everyone bearing 46 chromosome pairs. While not overly likely, this type of event is not especially rare in mammals, and we have observed this sort of thing happening within recorded human history in other species.  Some mammalian species even maintain distinct populations in the wild with differing chromosome numbers due to fusions, and these populations retain the ability to interbreed. </p>

<p>Further evidence for a fusion event in the lineage leading to modern humans comes from comparing <em>synteny</em>, or gene locations and orders on chromosomes within modern great apes – an issue we have discussed <a href="http://biologos.org/blog/signature-in-the-synteny">here</a> before.  In brief, what we see in human chromosome 2 is exactly what we would predict for a fusion event. When compared to other great apes, we see the genes on human chromosome 2 match up, in order, with two smaller ape chromosomes. We also see that sequences used at the tips of chromosomes are present at the proposed fusion site, and that human chromosome 2 has not one but two sites for the cell cytoskeleton to attach to for cell division – but that one of the sites is mutated and not functional, though it lines up precisely with the location of this site on the appropriate ape chromosome. Together, this evidence consistently supports both common ancestry for humans and great apes, and specifically that the difference we see in our chromosome numbers arose due to a single fusion event. I briefly discussed this evidence in my <a href="http://biologos.org/blog/the-sorrows-and-joys-of-teaching-evolution">last post</a> where I describe how I teach some of this material and the compelling impact it has on students exploring the evolution question for the first time. </p>

<h3>Enter the Denisovans</h3>
<p>With that as background, we are now prepared to appreciate a new finding that comes from genomics work done on the Denisovan hominids, an archaic species that is more closely related to Neanderthals than to us, but that nonetheless interbred with some anatomically modern humans as they migrated out of Africa and populated the globe. (For those not familiar with the Denisovans, or the evidence for our interbreeding with them, both Darrel Falk and I have written on this previously, <a href="http://biologos.org/blog/a-geneticists-journey">here</a> and <a href="http://biologos.org/blog/understanding-evolution-neanderthals-denisovans-and-human-speciation">here</a>). Recently, a more detailed understanding of the Denisovan genome <a href="http://www.nature.com/news/new-dna-analysis-shows-ancient-humans-interbred-with-denisovans-1.11331">was published</a>, and nested in the new information is the discovery that the Denisovans share the 46 chromosome set with the same fusion that <a href="http://johnhawks.net/weblog/reviews/denisova/denisova-chromosome-2-2012.html">we have</a>. This strongly supports the hypothesis that the fusion event predates the separation of our species. If we were to represent this on a phylogeny, we can now place this event with more accuracy than before (as before, the phylogeny is not to scale): </p>

<p class="caption-center"><img src="http://biologos.org/uploads/static-content/denisovans_fig_3.jpg" alt="" height="452" width="513"  /></p>
 
<p>Despite this new information, one obvious question remains. Did the Neanderthals also have the 46-pair set? From looking at the phylogeny above, we can see that the most likely answer is that they did, since the fact that the Denisovans had it strongly implies that the last common ancestor of humans and Neanderthals / Denisovans had it as well, and the Neanderthal-Denisovan split comes later. While the Denisovan DNA samples are of high enough quality to make this assessment, we do not yet have Neanderthal DNA of high enough quality to do the same analysis with current methods (though one additional feature of the new work on the Denisovan genome is developing more sensitive DNA sequencing techniques that may resolve this question in the future).</p>

<p>In other words, this fusion seems to be an ancient one, predating our species by several hundred thousand years. Present estimates of the last common ancestor between humans and Neanderthals / Denisovans  range at about 800,000 years ago.</p>

<h3>Implications for understanding our “becoming human”</h3>
<p>The main implication from this work is that it places the fusion event well before the advent of our species. I’ve often chatted informally with Christians about evolution, and at times some have thought that this fusion event was what “started” our species, or made our species unable to interbreed with other groups. Some have even suggested that perhaps the fusion event was what produced the first human (i.e. Adam). </p>

<p>Note that thinking this way suggests a misunderstanding of how chromosome fusions occur and what effect they have on their hosts. A fusion does not precipitate a speciation event, but rather the individual with the fusion remains a part of his or her population, and able to interbreed, even if with reduced fertility. Also, there is no necessary biological effect or change that the fusion produces on the appearance of the organism.  These misunderstandings aside, however,what this new evidence shows is that this fusion event took place long before modern humans arose at around 200,000 years ago. Indeed, the 800,000 years ago date for the last human - Denisovan common ancestor means that this is the most recent date possible for the fusion. While it is an interesting piece of our evolutionary history, it doesn’t seem to have much to do with how we came to acquire the traits that set us apart from, and ultimately outcompete, other similar species.</p> 
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        <pubDate>Thu, 06 Sep 12 13:07:21 -0700</pubDate>
        <dc:creator>Dennis Venema</dc:creator>
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        <title>The Randomness Project</title>
        <link>http://biologos.org/blog/the&#45;randomness&#45;project?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/the&#45;randomness&#45;project?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>It is not uncommon to hear voices proclaiming that biology and physics have shown us that—at fundamental levels—nature is random, hence meaningless, purposeless, and without a creator.  But how might God work providentially through indeterminate processes?  The John Templeton Foundation has provided a generous grant of $1.69 million to support a new research initiative on the theme of Randomness and Divine providence.</description>
        <content:encoded><![CDATA[<p>It is not uncommon to hear voices proclaiming that biology and physics have shown us that—at fundamental levels—nature is random, hence meaningless, purposeless, and without a creator.  In fact, chance (or randomness) has often been seen as inconsistent with Christian faith by Christians, too, not just by those opposed to faith.  For instance, none other than John Calvin wrote:</p>

<blockquote><p>Suppose a man falls among thieves, or wild beasts; is shipwrecked at sea by a sudden gale; is killed by a falling house or tree.  Suppose another man wandering through the desert finds help in his straits; having been tossed by the waves, reaches harbor; miraculously escapes death by a finger’s breadth.  Carnal reason ascribes all such happenings, whether prosperous or adverse, to fortune.  But anyone who has been taught by Christ’s lips that all the hairs if his head are numbered [Matt. 10:30] will look further afield for a cause, and will consider that all events are governed by God’s secret plan. </p></blockquote>

<p>In this passage, Calvin presents belief in “fortune” as evidence of carnal reasoning, and statements like this one have contributed to a widely-held notion that modern scientific understandings of the role that randomness plays in nature is inconsistent with belief in divine providence.  In other words, if “randomness” equals blind and capricious “fortune,” then how can God be said to be working all things to his ends? </p>

<p>But Calvin could not have known of the very different understanding of randomness held by today’s scholars. Physical scientists, mathematicians, and statisticians have not yet agreed on a single unambiguous definition of the term “randomness,” but among these scientists, the term consistently refers to a family of related concepts focusing on <em>unpredictability of the outcomes of single events and the absence of pattern in sequences of outcomes</em>.  I like this statement by John Polkinghorne, “Chance doesn't mean meaningless randomness, but historical contingency. This happens rather than that, and that's the way that novelty, new things, come about.”  In Polkinghorne’s view, chance is an agent of creativity and can be perceived as being purposeful. </p>

<p>In fact, there are abundant examples of phenomena in nature in which randomness plays a role one could understand as being purposeful.  For example, osmosis is a marvelous mechanism that enables all 10 trillion cells in our bodies to be nourished – it depends on the random motion of molecules.  The human immune system is able to defend the body against attacks from millions of different microorganisms using a relatively small number of building blocks and random combinations of these to fashion defenses specific to each adversary.  We never take a breath and find it to be all nitrogen or carbon dioxide – random motion of molecules keeps oxygen close to uniformly distributed throughout the atmosphere.  </p>

<p>In 2007, a British statistician, David Bartholomew published <em>God, Chance, and Purpose</em> in which he argues that God “can have it both ways”—that he can use low level randomness to accomplish divine purposes while simultaneously maintaining order at a higher level.  Of course, we cannot prove that God ordained these random processes to achieve divine purposes in the world.  But to a person of faith, such an interpretation in both consistent with the observations we make in science and with the Scriptural notion of God’s providential care for the world.</p>

<p>Considerations like these led the John Templeton Foundation to provide a generous grant of $1.69 million to support a new research initiative on the theme of Randomness and Divine providence.  Beginning this past summer, the program has the purpose of providing support for solid theoretical exploration of the kinds of ideas and possibilities expressed above—involving theology, philosophy, natural science, mathematics, and statistics.  The grant will support individual scholars and teams of scholars who are willing to devote a significant amount of time between March of 2013 and June of 2015 to such work, and the project’s request for proposals suggests the following as questions researchers might pursue:</p>

<ul><li>How might God work providentially through indeterminate processes?  Can recent advances in understanding the nature of randomness offered by algorithmic information theory, physics, biology, and other sciences provide insight into this question?</li>
<li>Can we bring clarity to the concept of "randomness"?  Philosophers and scientists have tried on occasion to give precise definitions of when a process is random, but more work needs to be done on the question.  How do (or should) conceptions of randomness vary across academic disciplines?</li>
<li>What are some possible implications of randomness for hiding or unfolding divine creativity and purpose in the world?  Could God use randomness to (1) generate creativity, (2) hide divine actions, or (3) unfold information? Why might God do so?</li>
<li>How might we identify and come to understand a significant collection of nondeterministic processes in which agents could intentionally employ randomness to bring about purposeful results?</li>
<li>How might we mathematically and physically model random processes in ways that help us understand how divine providence could be exercised in a "chance-governed" world?</li>
<li>How do "laws and orders" in nature interplay with "chance and randomness" in bringing about results that can be interpreted as aspects of divine providence?</li>
<li>Might randomness be evidence of limitations in human knowledge but nothing more?  Or might it be evidence of ontological indeterminism?  Might this be tested?</li>
<li>What implications does randomness have for aspects of God’s relationship with the physical world such as God’s relationship to time and God’s role in causation?  How might randomness be reconciled with God’s foreknowledge?</li>
<li>How might an understanding of providence based on an extended Molinism and/or open theology incorporate randomness?  For example, could an extended Molinism provide a plausible account of the relationship between quantum mechanics and divine providence?</li>
<li>What are some theodical implications of randomness, particularly for the issue of natural evil?</li>
<li>How have the theological traditions of Augustine, Maimonides, Aquinas, Luther, and Calvin addressed chance and fortune?  In what ways might they incorporate ontological randomness?</li>
<li>How do or could religions other than the Judeo/Christian tradition understand and incorporate randomness?</li>
<li>How is the concept of randomness understood by advocates of secularism, naturalism, and new atheism?  What are the strengths and weaknesses of these usages?</li>
<li>How might an understanding of randomness in the world alter our conceptions of divinity, especially our understanding of divine providence?</li></ul>

<p>Despite the range of issues mentioned above, research is by no means restricted only to these topics. In fact, the structure of the program is designed to foster collaboration and build community between scholars, with the end of expanding the range and integration of their work: two conferences will be held to bring scholars together with each other and then with members of the public—one at Calvin College in 2013 and the other at Fuller Theological Seminary in 2015. To get more information and to learn how to submit a proposal, see the <a href="http://www.calvin.edu/mathematics/randomnessproject/">project website</a>; then join us in exploring the truth that all creation glorifies God—even randomness!</p>
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        <pubDate>Fri, 31 Aug 12 05:00:42 -0700</pubDate>
        <dc:creator>James Bradley</dc:creator>
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        <title>David Lack: Evolutionary Biologist and Devout Christian</title>
        <link>http://biologos.org/blog/david&#45;lack&#45;evolutionary&#45;biologist&#45;and&#45;devout&#45;christian?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/david&#45;lack&#45;evolutionary&#45;biologist&#45;and&#45;devout&#45;christian?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Charles Darwin’s personal struggles and ultimate rejection of Christianity are well documented, and people are eager to link his loss of faith to his evolutionary theory.  David Lack, on the other hand, began his scientific career as an agnostic, but shortly after publishing his famous book on the evolution of &quot;Darwin&apos;s finches&quot;, he converted to Christianity.</description>
        <content:encoded><![CDATA[<h3>David Lack</h3>

<p>In my previous <a href="http://biologos.org/blog/david-lack-and-darwins-finches" Target=”_blank”>essay</a>, I discussed “Darwin’s finches” and how surprisingly little Charles Darwin himself had to say about them.  In fact, it was actually the British ornithologist David Lack (1910-1973) who conducted the critical research that immortalized the finches in biology textbooks and popular lore.  In 1973, the eminent German zoologist <a href="http://www.achievement.org/autodoc/page/may1pro-1" Target=”_blank”>Ernst Mayr</a> wrote:</p>

<blockquote>Already well known among professional ornithologists, his work on the Galapagos finches gave David Lack world fame… There is no modern textbook of zoology, evolution or ecology which does not include an account of his work.<sup>1</sup></blockquote>

<p class="caption-left"><img src="http://biologos.org/uploads/static-content/320px-Ernst_Mayr_PLoS.jpg" alt="Ernst W. Mayr" height="218" width="320"  /></br>Ernst W. Mayr</p>


<p>Decades have passed since Mayr wrote these words, and David Lack’s name has largely faded from public discourse.  On the other hand, the Galapagos finches have become one of the most recognized symbols of evolution in the world today.  Does it really matter whether Lack or Darwin gets credit for describing the evolution of these remarkable birds?</p>

<p>Insofar as evolutionary theory contrasted with religious belief, it makes a <em>big</em> difference. In a culture that is eager to equate evolution with atheism, it should come as no surprise that these birds are only known as “Darwin’s finches”.  Darwin’s personal struggles and ultimate rejection of Christianity are well documented, and people are eager to link his loss of faith to his evolutionary theory.  David Lack, on the other hand, began his scientific career as an agnostic, but shortly after publishing his famous book on the evolution of Galápagos finches, he converted to Christianity! <sup>2</sup></p>

<h3>A Christian at the forefront of evolutionary biology</h3>

<p>Lack’s Christian conversion did not mark the end of his scientific achievements, either.  In fact, he continued as a prolific researcher until just weeks before he died.  Among his many achievements, he was Director of the Edward Grey Institute of Field Ornithology (1945-1973), Fellow of the <a href="http://en.wikipedia.org/wiki/Royal_Society">Royal Society</a>, and President of both the International Ornithological Congress (1962-66) and the British Ecological Society (1964-65).  His fellow scientists held him in great esteem:</p>

<blockquote>He was described as one of the most outstanding among world ornithologists; he was certainly this, but he was also one of the world’s leading evolutionists.  All the time one saw developing his use of birds as material for the study of wider, deeper, biological problems.<sup>3</sup></blockquote>

<p class="caption-right"><img src="http://biologos.org/uploads/static-content/Lack_Chimney.png" alt="David Lack in search of Chimney Swifts" height="206" width="288"  /></br>David Lack at the International Ornithological Congress, 1962.</p>

<p>Clearly David Lack was an outstanding scientist, and his commitment to Christianity did not tarnish, hinder, or undermine his research on evolution.  But we might also ask, what was Lack like as a Christian?  Did he keep his faith hidden from view, afraid that it might compromise his reputation as a scientist?  Ernst Mayr, who interacted with David Lack professionally and personally for nearly 40 years, had this to say:</p>

<blockquote>I have known only few people with such deep moral convictions as David Lack. He applied very high standards to his own work and was not inclined to condone shoddiness, superficiality and lack of sincerity in others. This did not always go well with those who preferred to compromise in favour of temporary expediency. David had been raised in an environment in which great stress was layed on moral principles and this attitude was later reinforced by his Christian faith. This explains his extraordinary unselfishness and modesty, and his great devotion to his family, to his students, to his friends, and to all the things that he lived for. The equanimity, indeed serenity, with which he faced death after his terminal cancer had been diagnosed is further evidence of the strength which his faith gave him.<sup>4</sup></blockquote>

<p>Like Asa Gray<sup>5</sup> before him, and Francis Collins<sup>6</sup> after, David Lack was an sincere, devout Christian, as well as a leading scientist who employed evolutionary theory to make brilliant discoveries about the natural world.  Though Lack did not see any conflict between his scientific and Christian beliefs, he was sympathetic to the concerns of his fellow Christians.  Therefore, ten years after publishing his masterpiece on <em>Darwin’s Finches</em>, Lack wrote another book entitled <em>Evolutionary Theory and Christian Belief: The Unresolved Conflict.</em></p>

<p>Originally published in 1957, this book deals with the very same science and faith questions that Christians struggle with today— topics like randomness and chance, death in nature, miracles, and evolutionary ethics.  While it would be unreasonable to expect anyone to completely resolve these matters, Lack offered numerous insights both as a devout Christian and one of the world’s leading biologists.</p>

<p>Let’s take a brief look at how Lack addressed some of these questions.
</p>

<h3>Blind Chance or Divine Plan?</h3>

<p>Evolutionary theory does not invoke supernatural forces in explaining the history of life on Earth; instead, it relies on naturally-occurring processes to account for the vast diversity of life.  Additionally, it explains animal behavior largely in terms of survival and reproduction, without appealing to any higher purpose of life.  Taken together, does this imply that God is absent, and that our lives are ultimately meaningless?</p>

<p>David Lack responded,</p>

<blockquote>Behind the criticism that Darwinism means that evolution is either random or rigidly determined lies the fear that evolution proceeds blindly, and not in accordance with a divine plan.  This is another problem that really lies outside the terms of reference of biology.  It is true that biologists have inferred that, because evolution occurs by natural selection, there is no divine plan; but they are being as illogical as those theologians whom they rightly criticize for inferring that, because there is a divine plan, evolution cannot be the result of natural selection.<sup>7</sup></blockquote>

<p>When rendering judgment on the ultimate meaning of life, biologists are speaking from their person beliefs, not from scientific authority.  Moreover, Lack pointed out that many science enthusiasts have employed the concept of “randomness” in ambiguous and misleading ways:</p>

<blockquote>Mutations are random in relation to the needs of the animal, but natural selection is not.  Selection, as the word implies, is the reverse of chance.<sup>8</sup></blockquote>

<div class="see-also">See more about <a href="http://biologos.org/blog/evolution-is-god-just-playing-dice2">randomness and divine governance</a>.</div>

<p>In support of his view, Lack pointed out that <a href="http://www.mapoflife.org/about/convergent_evolution/?section=0">convergent evolution</a> has produced uncanny resemblances between distantly-related species across the world, notably among marsupials in Australia.  Different evolutionary trajectories can lead to very similar results.<sup>9</sup></p>

<h3>Death in Nature</h3>

<p>After addressing concerns about the seeming “randomness” of evolution, Lack turned to another great concern, the role of death in natural selection:</p>

<blockquote>Various writers–some Christian and others agnostic–have been troubled about natural selection not only because it seems too random, but also because it is so unpleasant.<sup>10</sup></blockquote>

<p class="caption-left"><img src="http://biologos.org/uploads/static-content/fossilgraveyard_square.jpg" alt="" height="247" width="250"  /></br>Image courtesy John Marsh Photography via Flikr</p>

<p>Genetic mutations are generally harmful, and for evolution by natural selection to produce new forms of life, an awful lot of organisms must die.  For many Christians, it is inconceivable that a loving and merciful God would allow death on such a vast scale.</p>

<p>But Lack also pointed out that rejecting evolutionary theory doesn’t actually get rid of the problem of death.  Regardless of what we think about evolution, the brute fact of <a href="http://science.nationalgeographic.com/science/prehistoric-world/mass-extinction/">mass extinction</a> remains.  Fossils of innumerable animals, plants, and microorganisms clearly demonstrate that the vast majority of species that have ever lived are now dead.  It may be quite troubling for us to observe that our planet is a giant graveyard of natural history, but rejecting evolution will not change this fact. 

<p>Some Christians conclude that death could not have been part of the divine plan; instead, it must be the work of the devil, or the result of human sin.  But this interpretation contains an implicit assumption that death is always evil.  Is this really true?  David Lack offered two intriguing insights:</p>

<div class="see-also">See more on <a href="http://biologos.org/questions/death-before-the-fall">death and the Fall</a>.</div>

<p class="caption-right"><img src="http://biologos.org/uploads/static-content/greencourtship.jpg" alt="" height="241" width="240"  /></br>Blue-cheeked Bee-eater (Merops persicus) pair in<br /> courtship, seen in Basai, Gurgaon, India.<br /> Image courtesy <a href="http://www.flickr.com/photos/kkoshy/">Koshy Koshy</a>.</p>

<ol><li>For a population to maintain a stable size, all births must be balanced by a corresponding number of deaths.  A world in which no animals die is a world in which no animals are born.  That means no reproduction, no courtship, and by implication, no singing birds—much to the dismay of ornithologists and people in love! </p>

<li>Some people, taking cues from Isaiah 11:6-7, suppose that in a perfect world, animals only eat plants.  But in fact, plants themselves depend on the bacterial decay of dead organisms.  If animals didn't die, then essential nutrients would disappear from the ground, and plants could not continue to grow. Eventually, there would be nothing left for animals to eat, and all life would cease.<sup>11</sup></li></ol>

<h3>Miracles</h3>

<p>Many Christians are uncomfortable with evolutionary theory because it denies a miraculous, supernatural origin of life.  They fear that if those miracles are denied, it might lead people to reject the possibility of miracles altogether, including the central feature of the Christian faith—the resurrection of Jesus from the dead.</p>

<p>As a devout Christian, David Lack certainly affirmed the fundamental tenets of the gospel.  But at the same time, he explained to his readers that invoking miracles to account for unusual features of the natural world is not particularly helpful when trying to deepen our understanding of God’s great multitude of creatures:</p>

<blockquote>[The biologist's] research depends on repeated observations.  It need not, as popularly supposed, consist solely, or even mainly of measurements and experiments, but unless events are repeated, they cannot be assessed by science.  Hence truly unique events come outside the domain of science, though biologists are not usually convinced when told they must, therefore, leave such problems as miracles to others.   For one of the chief ways in which research has advanced is through the discovery of apparent exceptions to the known rules, and if further study shows the exceptions to be replicable, new regularities are revealed from which modified rules can be propounded.  This method has been so successful that the biologist tends to doubt whether there are any types of irregularity, or seeming irregularity, that will not yield to it.<sup>12</sup></blockquote>

<p>But just because a scientist cannot repeat a particular event doesn’t mean it didn’t happen.  Both natural history and human history contain unique events that only happened once.  As we peer into the past, the difficulty of discerning fact from fiction inspires us to further investigate the mysteries that surround us.
</p>

<h3>Conclusion</h3>

<p>David Lack’s book <em>Evolutionary Theory and Christian Belief</em> was quite insightful, but his enduring achievements took place in evolutionary biology, a place where many Christians are afraid to tread.  While it is significant that he himself found no contradiction between his faith and his science, perhaps the greatest testament to the compatibility between Christian faith and evolution is the life he led as a believer in both.  As we saw in Ernst Mayr’s candid praise, Lack reflected the light of Christ through both his personal and his professional relationships.</p>

<p>Today, many voices in our culture still insist that evolution is incompatible with a sincere faith in Jesus, but a careful look at history demonstrates otherwise. In the future, perhaps more people of faith will have confidence to study biology knowing that one of the most iconic symbols of evolution—the Galapagos finches—owe their fame in large part to a devout Christian named David Lack.</p>

<h3>Notes</h3>

<p class="date">1.  Mayr (1973) “David L. Lack.” <em>Ibis</em>: 433.<br>
2.  Larson, E. J. <em>Evolution's Workshop: God and Science on the Galapagos Islands</em>. New York, Basic Books, 2001: 218.  See also Lack, David. (1973) “My life as an amateur ornithologist.” <em>Ibis</em>: 431.<br>
3.  Alister C. Hardy (1973). "David L. Lack." <em>Ibis</em>: 436.<br>
4.  Mayr (1973) “David L. Lack.” <em>Ibis</em>: 433.<br>
5.  For more about Asa Gray, see the BioLogos FAQ “<a href="http://biologos.org/questions/christian-response-to-darwin">How have Christians responded to Darwin’s Origin of Species?</a>”<br>
6.  See Francis Collins’ autobiography <em>The Language of God: A Scientist Presents Evidence for his Belief</em> (New York: Free Press, 2007)  (<a href="http://biologos.org/resources/books/the-language-of-god">book info</a>)<br>
7.  Lack, David. <em>Evolutionary Theory and Christian Belief: The Unresolved Conflict</em>. Methuen & Co., 1957: 67.<br>
8.  Lack, p65.<br>
9.  For more on convergent evolution and the possibility that evolution could be compatible with some form of divine purpose, see the work of Simon Conway Morris, especially <em>The Deep Structure of Biology: Is Convergence Sufficiently Ubiquitous to Give a Directional Signal?</em> Templeton Press, 2008.<br>
10.  Lack, p72.<br>
11.  Lack, pp75-76.<br>
12.  Lack, p82.</p><br>
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        <pubDate>Tue, 07 Aug 12 04:00:24 -0700</pubDate>
        <dc:creator>Thomas Burnett</dc:creator>
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        <title>Being Human (Infographic)</title>
        <link>http://biologos.org/blog/being&#45;human&#45;infographic?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/being&#45;human&#45;infographic?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>The BioLogos Forum is pleased to present this infographic about the current anthropological understanding of human evolution, which takes into account research into both physiological and cultural developments among our ancient ancestors.</description>
        <content:encoded><![CDATA[<a href="http://biologos.org/uploads/static-content/Human-Evolution-Infograpic_full.png"><img src="http://biologos.org/uploads/static-content/Human-Evolution-Infograpic_570.png" alt="" height="1008" width="570"  /></a>
<p><strong>(Click Image for Full Resolution)</strong></p>]]></content:encoded>
        <pubDate>Mon, 30 Jul 12 10:06:50 -0700</pubDate>
        <dc:creator></dc:creator>
        <!--<dc:date>Jul 30, 2012 10:06</dc:date>-->
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        <title>Hominids Lived Millions of Years Ago, but How Can We Tell? (Videocast)</title>
        <link>http://biologos.org/blog/hominids&#45;videocast?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/hominids&#45;videocast?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>This BioLogos videocast addresses the age of recently discovered hominid fossils and how scientists are able to obtain those dates.</description>
        <content:encoded><![CDATA[<p>Today we present the fifth entry in our on-going BioLogos videocast series. The latest episode addresses the age of recently discovered hominid fossils and how scientists are able to obtain those dates. The script was written by biology student Joy Walters, with help from BioLogos president Darrel Falk.</p>

<p>For more, be sure to read our FAQs <a href="http://biologos.org/questions/ages-of-the-earth-and-universe">How are the ages of the Earth and universe calculated?</a> and <a href="http://biologos.org/questions/what-scientific-evidence-do-we-have-about-the-first-humans">What scientific evidence do we have about the first humans?</a>, as well as our recent infographic <a href="http://biologos.org/blog/how-do-we-know-the-earth-is-old-infographic">How Do We Know the Earth is Old?</a>.</p>

<h3>Author's Note from Joy Walters</h3>
<p>As I mentioned in my first post, I grew up skeptical of the whole idea of evolution. One contributor to my disbelief was the lengthy timescale for the “tree of life” that was presented with the theory. I would hear, for example, that dinosaurs lived hundreds of millions of years ago, but there was no explanation of why this was true; it was just given as a fact. No one explained the methods of dating, and so I thought biologists simply estimated the ages of species to fit their preconceived notions of how long it would take for one species to emerge from another. It also seemed like the ages were periodically revised and extended farther back in time, and I figured scientists needed to manipulate numbers to make evolution plausible. This, in my mind, made the theory both unbelievable and dismissible.</p>

<p>Once I learned about the techniques used to date fossils, I realized that my first impressions were wrong; the ancient ages of species are scientific determinations rather than scholarly conjectures. However, I have found in recent conversations that Christians remain skeptical of old ages and the evolutionary time scale. For this reason, I wanted the videocast to address the process of fossil dating (what the methods are and why they are accurate) while focusing on cases where hominid fossils were discovered and dated using these very methods. My hope is that Believers would be informed about the evidence for human evolution and its scientific grounding.</p>]]></content:encoded>
        <pubDate>Thu, 26 Jul 12 05:00:03 -0700</pubDate>
        <dc:creator>Joy Walters</dc:creator>
        <!--<dc:date>Jul 26, 2012 05:00</dc:date>-->
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        <title>What scientific evidence do we have about the first humans?</title>
        <link>http://biologos.org/questions/what&#45;scientific&#45;evidence&#45;do&#45;we&#45;have&#45;about&#45;the&#45;first&#45;humans?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/questions/what&#45;scientific&#45;evidence&#45;do&#45;we&#45;have&#45;about&#45;the&#45;first&#45;humans?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In recent decades, scientists have discovered more about the beginnings of humanity.  The fossil record shows a gradual transition over 5 million years ago from chimpanzee&#45;size creatures to hominids with larger brains who walked on two legs.   Later hominids used fire and stone tools and had brains as large as modern humans.  Fossils of homo sapiens in east Africa date back nearly 200,000 years.  Humans developed hearths for fire, stone points for spears and arrows, and cave paintings by 30,000 years ago.   By 10,000 years ago, humans had spread throughout the globe.   Genetic studies support the same picture.  Humans share more DNA with chimpanzees than with any other animal, suggesting that humans and chimps share a relatively recent common ancestor.  Also, the same defective genes appear in both humans and chimps, at the same locations in the genome—an observation difficult to explain except by common ancestry. Genetics also tells us that the human population today descended from more than two people. Evolution happens not to individuals but to populations, and the amount of genetic diversity in the gene pool today suggests that the human population was never smaller than several thousand individuals.  Yet all humans, of all races, are descended from this group.  Humanity is one family.</description>
        <content:encoded><![CDATA[<em>Coming Soon</em>]]></content:encoded>
        <pubDate>Thu, 12 Jul 12 14:34:24 -0700</pubDate>
        <dc:creator></dc:creator>
        <!--<dc:date>Jul 12, 2012 14:34</dc:date>-->
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        <title>Randomness and Evolution: Is There Room for God? (Videocast)</title>
        <link>http://biologos.org/blog/randomness&#45;and&#45;evolution&#45;is&#45;there&#45;room&#45;for&#45;god&#45;videocast?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/randomness&#45;and&#45;evolution&#45;is&#45;there&#45;room&#45;for&#45;god&#45;videocast?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>This BioLogos videocast addresses the idea of randomness as a part of natural selection, and whether it challenges the possibility of God using the evolutionary process as a means of creation.</description>
        <content:encoded><![CDATA[<p>Today we present the fourth entry in our on-going BioLogos videocast series. So far we have looked at the fossil record and genetic evidence for evolution, as well as speciation and macroevolution. The latest entry addresses the idea of randomness as a part of natural selection, and whether it raises questions about the possibility of God using the evolutionary process as a means of creation. The script was written by biology student Joy Walters, with help from BioLogos president Darrel Falk.</p>

<p>For more, be sure to read Randall Pruim's recent series <a href="http://biologos.org/blog/series/randomness-and-gods-governance">Randomness and God’s Governance</a>, Kathryn Applegate's post <a href="http://biologos.org/blog/thats-random-a-look-at-viral-self-assembly2">That's Random: A Look at Viral Self-Assembly</a>, and our FAQ <a href="http://biologos.org/questions/chance-and-god">How Do Randomness and Chance Align with Belief in God's Sovereignty and Purpose?</a>.</p>

<h3>Author's Note</h3>

<p>I am so thankful that I grew up in a Christian environment, which both kindled and nurtured my relationship with Jesus Christ. The Biblical instruction I received from my parents, pastors, and teachers has been invaluable as I walk out my love for the Lord from day to day. However, there was one specific topic growing up which was not fully addressed, namely evolutionary theory. </p>

<p>Coming from a conservative Christian background, evolution was given little or no thought because of its seeming contradiction to the creation story in Genesis. To me, evolution meant a monkey became a human, and as far as I knew, I had never seen that happen! So, of course, it appeared too improbable to hold any truth. When it was discussed, an inadequate picture of its ideas was often painted, which caused immediate suspicion and rejection of the theory. I don’t think this was intentional, but most Christians have never learned an unbiased, in-depth theory of evolution that is completely detached from societal agendas and philosophical conclusions. Therefore, their explanations of the theory are often misinformed. </p>

<p>My senior year of high school, I took AP Biology, and finally learned the scientific reasoning supporting this theory. I was surprised by how logical and obvious the mechanisms of change (such as mutations, natural selection, genetic drift, and so on) were that gave rise to new species. My subsequent response was, “No wonder people believe evolution occurred.” At that point, I was convinced that microevolution (evolution within a species) existed, but I was still questioning macroevolution.  </p>

<p>Now, being at Point Loma Nazarene University as an undergrad in the Biology-Chemistry major and a year-round, student intern at BioLogos, my understanding of evolution has expanded enormously. I have enjoyed critically thinking through the evidence for evolution and reading articles that tackle difficult issues at the interface of science and Christian faith. Ultimately, I know that God has created all things, but the processes he used surpass my small understanding. </p>

<p>My personal wrestling with evolution and quest for truth has led to times of prayer and studying God’s Word, which has deepened my love for him in ways I cannot express. The first chapters of Genesis, in particular, have come alive. My whole life, the creation story was a straightforward list of facts about the creation of the world; I never searched further. I didn’t even perceive the truths Genesis declared over my very identity and God’s character. The more I study his Word and handiwork, I glimpse the awesomeness and majesty of the Creator, who loves me much more than I know. There is still so much to learn, but I am confident that he will lead me into all truth as I seek him out.</p>

<p>I desire to give others the opportunity to see evolution accurately and to distinguish it from the traditional, philosophical, and personal conclusions that too often cloud the scientific theory. I believe these conclusions alienate Christians from evolution more than the scientific theory itself. Ultimately, I do not mean to convince someone about evolution, but simply to give them the freedom to understand it. </p>

<p>Therefore, my goal for this podcast is two-fold:</p>

<ul><li>First, to offer a new perspective on randomness within natural processes that removes its negative connotations (especially as it relates to evolution).</li>
<li>Second, to expose why evolution is powerless to support conclusions beyond the physical realm.</li></ul>

<p>This will hopefully encourage others to study evolutionary theory and draw their own conclusions about its meaning in the framework of their faith.</p>]]></content:encoded>
        <pubDate>Fri, 15 Jun 12 05:00:15 -0700</pubDate>
        <dc:creator>Joy Walters</dc:creator>
        <!--<dc:date>Jun 15, 2012 05:00</dc:date>-->
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        <title>Series: Randomness and God’s Governance</title>
        <link>http://biologos.org/blog/series/randomness&#45;and&#45;gods&#45;governance?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/randomness&#45;and&#45;gods&#45;governance?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In this three&#45;part series from Pruim’s chapter in the book Delight in Creation: Scientists Share Their Work with the Church, mathematician Randall Pruim explains what scientists and mathematicians mean when they speak of something being “random”. He also addresses God&apos;s use of apparent randomness in creation as a part of his sovereign rule.</description>
        <content:encoded><![CDATA[<p>I’ve enjoyed playing games as long as I can remember. Among my earliest memories are playing <em>Candy Land</em>, <em>Chutes and Ladders,</em> <em>Don’t Break the Ice</em>, and <em>Don’t Spill the Beans</em>. When I was a child, whenever someone did not know what to get me for a birthday or Christmas present, a game was always a good choice. Today, in the back room of our house, we have a closet filled with games that my children and I have accumulated over the years. The rest of our games are either in a closet upstairs or in one of several large boxes in the attic. Periodically we rotate the location of the games for variety.</p>

<p>Many of the games I enjoyed playing involve a combination of strategy and randomness: card games of various sorts, backgammon, and board games like <em>Monopoly</em> and <em>Parcheesi</em>. Some games that rely exclusively on chance (like <em>War</em> and <em>Candy Land</em>) or too heavily on chance (like <em>Sorry</em>) quickly became uninteresting to me. In fact, for <em>Sorry</em>, <em>War</em>, and several other games, I introduced additional rules to change the balance of strategy and luck—for example, by allowing each player to hold a hand of cards rather than merely flip a card and follow its bidding.</p>

<p>When my children were young, I played many games with them, especially those involving some amount of chance. I always play to win, so games of pure strategy like chess gave me too great an advantage—at least when they were still young. I still remember the first time I played the German game <em>Mitternachtspartie</em> with my children and some of their cousins. The game uses a die on which the number 5 has been replaced with the image of Hugo the ghost. Each player rolls the die and moves one of his figures the specified number of squares, unless Hugo is rolled, in which case Hugo moves instead. </p>

<p>I quickly worked out the expected distance Hugo would move for each of my turns and the expected number of squares I would get to move my own figures each turn. Using that information, I could strategically place my figures in the opening portion of the game. I fully expected to win this first game, since my young children were going to have to learn from experience what I already knew by the mathematics of probability. I lost—badly. As it turned out, the die had two Hugos on it. So compared to my expectations, Hugo moved twice as often, and my figures moved slightly less far. That combination turned the carefully calculated positioning of my figures into a disaster.</p>

<h3>From Fun and Games to Science</h3>

<p>I still enjoy playing games, including games that involve chance. But these days I encounter randomness even more often in my profession. I was trained as a mathematician and now work at the intersection of mathematics, statistics, and computer science.  Like many scientists, I use randomness on a daily basis as part of our toolkit for modeling and investigating all sorts of phenomena. Models known as stochastic models, which explicitly incorporate random components, often via simulation in computer software, are used to model everything from diffusion to genetics to quantum mechanics. Insurance companies and financial institutions use stochastic models to manage risk. If we include all the applications of statistics, then almost no area of science is untouched by the use of randomness.</p>

<p>Most of the time, scientists and game players alike don’t devote much thought to just what makes randomness tick. But they both know that the better they understand the probabilities, the more successful they are. Nevertheless, if you ask many of them what it means for something to be random, they may struggle to put it into words. I won’t try to give a precise definition either, but it is important that we have some idea what we are talking about, so let’s consider one of the prototypical examples of randomness: the tossing of a fair coin.</p>

<p>If I flip a coin, the result could be heads or tails. Until I flip the coin, I don’t know which it will be. In this sense, the coin toss is unpredictable. If the coin is fair, each result is equally likely, so while I cannot say in advance whether a particular result will be heads or tails, I can say something about a large number of flips: approximately half should be heads and the other half tails.</p>

<p>A little mathematics even allows me to determine a range around 50% in which the percentage will almost surely lie. For example, if I flip a fair coin 1,000 times, the percentage of heads will most likely be between 45% and 55% (where “most likely” means a 99% chance). If the percentage of heads lies outside this range—especially if it is quite far outside this range—I am going to be suspicious that the coin flipping process is not fair. That’s one of the key ideas in statistics: not only can we calculate the frequency with which an event occurs, but we can compare data to a stochastic model to see if they are compatible or incompatible.</p>

<p>There are several interesting things we can learn by considering a coin toss. First, probability calculations rely on assumptions. If the assumptions are incorrect, then the probability calculations will also be incorrect. For example, if the coin is biased (such as one that is heads 60% of the time), but we assume it is fair, then the probability calculations given above will be wrong. Of course, if the assumptions are not too far from correct, the results may still be sufficiently accurate for scientific conclusions. If we have an appropriate way to collect data, then we can test our assumptions by comparing data to projections made based on the assumptions.</p>

<p>Second, “random” does not imply “equally likely.” A fair coin should have equal probabilities of heads or tails, but a biased coin is no less random. It’s just different. It is not as simple to handle arithmetically as a situation in which all outcomes are equally likely, but it is not otherwise special. It is a common mistake to assume random events are equally likely when they are not (or when that assumption is not justified).</p>

<p>Third, randomness is about the process. It is a fun experiment to flip a penny 100 times, then spin a penny 100 times and record the side that is showing when it finally tips over, then to stand the penny on end (this takes a steady hand and a little practice) and record which side is showing after pounding the table. These are three different processes, and they do not yield the same results.</p>

<p>Fourth, random processes produce patterns. I sometimes ask my students to mentally flip a coin and record the results as a sequence of letters (e.g., “HTTHHTHT”). Then I have them actually flip a coin and record the results. If the sequences are long enough, I can almost always tell them which is which. The sequences imagined by the students tend to have too few runs of consecutive heads or tails. The sequences based on real coin flips usually include several heads in a row. People not familiar with randomness are often surprised at the patterns that result and assume that the process must not have been random when they perceive a pattern. Our eyes and minds are drawn to similarities and patterns—even those that are produced purely randomly. This can lead us to draw false conclusions from coincidences of all sorts. </p>

<img src="http://biologos.org/uploads/static-content/Pruim_Randomness_1_1.png" alt="" height="528" width="500"  />

<p>Consider the image in Figure 1. It was constructed using a computer to randomly throw 300 darts at a square board. Every position on the board was equally likely to be hit by a dart. This does not, however, mean that the dots are evenly spaced. There are 100 smaller squares. The average is three dots per square. But your eye is likely drawn to some clusters and voids. My eye also catches a graceful downward swoop in the lower part of the upper left quarter. All of this is exactly what we should expect from this random process. If we repeated this experiment, we should expect similar results. Several of the smaller squares would be empty and some others would have two or three times the average number of dots, but these clusters and voids would appear in different places.</p>

<img src="http://biologos.org/uploads/static-content/Pruim_Randomness_1_2.png" alt="" height="757" width="476"  />

<p>Finally, randomness can be used to produce patterns intentionally. Consider the two pictures in Figure 2. You may think the two pictures are identical, but they are not. However, they were each constructed using the same random process: 

<ol><li>Start at the lower left corner of the big triangle. </li>
<li>Randomly choose one of the three corners of the big triangle.</li>
<li>Move half way to that corner, placing a dot at the new location. </li> 
<li>Repeat steps 2 and 3, 50,000 times.</li></ol>

<p>The first few steps of this process for each image are illustrated in Figure 3. Although the final images look very similar, the route taken to get there is very different. In fact, the only point the two images have in common is the starting point. As the creator of the program that generated these images, I knew full well that the result would resemble a fractal image known to mathematicians as Sierpinski’s Triangle, even though I did not know or exercise any control over how the individual points would be selected.</p>

<img src="http://biologos.org/uploads/static-content/Pruim_Randomness_1_3.png" alt="" height="816" width="487"  />

<p>Despite our familiarity with children’s games and the importance of stochastic models throughout the sciences, many Christians have a reaction to randomness that falls somewhere between uneasy and antagonistic. And yet, those same Christians may well watch the evening news to learn about public opinion polls forecasting upcoming elections, take prescription drugs approved by the FDA based on statistics found in clinical trials, obtain electrical power from a nuclear power plant that uses random fission reactions, and insure their cars with companies that rely on stochastic models to set the rates. The foundation of each of these activities is a thorough understanding of randomness that begins with the simple description above.</p>

<p>So where does the uneasiness come from? Likely it comes from the feeling that taking randomness seriously means not taking God seriously. Or put more strongly, it comes from a fear that believing in randomness means not believing in God.  Next week we’ll address that problem by asking the question, “Could God use randomness to achieve his purposes?”</p><br></br>
]]></content:encoded>
        <pubDate>Mon, 21 May 12 05:00:55 -0700</pubDate>
        <dc:creator>Randall Pruim</dc:creator>
        <!--<dc:date>May 21, 2012 05:00</dc:date>-->
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        <title>Adam&apos;s Dream</title>
        <link>http://biologos.org/blog/adams&#45;dream2?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/adams&#45;dream2?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>While the specific “how” of our being made into the image of God will probably always remain a mystery, the Bible and creeds are clear on the “why” of our creation: we were made to worship the Lord, and be in relation with Him and each other.</description>
        <content:encoded><![CDATA[<p>Discussion about Adam as the first divine "Image-bearer" often turns on the perceived conflict between scientific evidence contradicting belief in a single biological ancestor of all living human beings and Scriptural testimony that humans were made different from the rest of the creation: we have capacity to reflect the image of God.</p>

<p>Many posts on this Forum have suggested that the cosmological narrative in Genesis 1 is best read as being primarily about God’s identity and agency, rather than about the physical make-up or material history of the natural world.  Similarly, we demonstrate our highest regard for Genesis 2’s account of the creation of Eve—the second fully human being—by looking to its meaning in terms of spiritual and interpersonal relationships, rather than genetic ones.  While the specific “how” of our being made into the image of God will probably always remain a mystery, the Bible and creeds are clear on the “why” of our creation: we were made to worship the Lord, and be in relation with Him and each other.  That intimate, conscious and deeply symbolic knowledge of our maker and fellow human beings is a profound difference that sets us apart from the other creatures.</p>

<p>I have frequently argued that poets are often the most clear on some of the important issues of our faith, including this one.  Today we feature a work by Robert Siegel, who identifies the imagination as the faculty by which we recognize and name those spiritual relationships.  As he says, “It's the imagination, hence language and art, that establishes the connections”; it is the imagination that allows us to conceive of and name the links between ourselves and creation, ourselves and each other, ourselves and the Creator God.</p>

<p>Though we often focus on Adam’s naming of the animals, and then even of Eve, Siegel helps us remember that it was in <em>hearing</em> his own name that Adam’s whole humanity came into being: he experienced the richness of being called by God to bear His likeness, but also of being called to by one that was profoundly “like him.”  Put another way, we are speakers, but also equally hearers. May we, too, be awakened to ourselves and our image-bearing identity by a still, soft voice saying our name. May we, too, in gratitude and delight, call upon the name of the one, Jesus, who is both our God and our fellow man.</p>


<h3>“Adam’s Dream”</h3>
<p>by Robert Siegel</p>

<p><em>The Imagination may be compared to Adam's dream:<br />
he awoke and found it truth</em>. --Keats</p>

<p>He saw the garden spreading past the trees<br />
he'd been warned to avoid (yet keep a special eye on).<br />
He'd learned by scents, transported by the breeze,<br />
myriads of roses and how, by hand, the scion<br /><br />
of one to graft on another--and what was edible:<br />
whole families of legumes, grasses, roots,<br />
melons, peaches, apples, pears. Incredible,<br />
the variety of tastes just from the fruits!<br /><br />
But it wasn't enough. Even the breathing animals<br />
with friendly grunt or sigh, silken warm side,<br />
and large affectionate eye were not able<br />
to speak. When he named them, none replied:<br /><br />
His words fell dead on the air--though he said<br />
them everywhere, walking or running to each place:<br />
to the mountain, which echoed back the sounds he made,<br />
or the still pool, returning his own gaze.<br /><br />
But no one answered him until one night in a dream<br />
he woke and heard a soft voice speak his name.</p>

<p>“Adam’s Dream” first appeared in issue 3 of <a href="http://stonework03.blogspot.com/2005/11/stonework-issue-3.html" target="_blank">Stonework</a>, the literary journal of Houghton College. &copy; 2001 Robert Siegel</p><br> </br>

<p class="intro">Robert Siegel is the author of nine books of poetry and fiction, most recently <a href="http://www.amazon.com/gp/product/1557254303/ref=as_li_ss_tl?ie=UTF8&tag=thebiofou06-20&linkCode=as2&camp=217145&creative=399369&creativeASIN=1557254303">A Pentecost of Finches: New and Selected Poems</a><img src="http://www.assoc-amazon.com/e/ir?t=&l=as2&o=1&a=1557254303&camp=217145&creative=399369" width="1" height="1" border="0" alt="" style="border:none !important; margin:0px !important;" />. He has received prizes and awards from Poetry, Prairie Schooner, The Transatlantic Review, the Ingram Merrill Foundation, and the National Endowment for the Arts, and his poems have appeared in numerous journals and anthologies.  His fiction includes Alpha Centauri and the Whalesong trilogy, which received the Golden Archer and Matson awards.  With degrees from Wheaton, Johns Hopkins, and Harvard, Siegel has taught at Dartmouth, Princeton, and Goethe University in Frankfurt, and for twenty-three years at the University of Wisconsin-Milwaukee, where he directed the graduate creative writing program and is currently professor emeritus of English. He is married to Ann Hill Siegel, a photographer, and lives on the coast of Maine.</p><b></br>]]></content:encoded>
        <pubDate>Sun, 20 May 12 05:39:50 -0700</pubDate>
        <dc:creator>Mark Sprinkle</dc:creator>
        <!--<dc:date>May 20, 2012 05:39</dc:date>-->
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        <title>Chance Creation</title>
        <link>http://biologos.org/blog/chance&#45;creation?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/chance&#45;creation?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>It should not be surprising that John Cage asked the stuff he used to make paintings to take part in the process—to contribute its own identity to the intentional, purposeful, and determined work of creating “based on chance.”</description>
        <content:encoded><![CDATA[<p>Mathematician Randall Pruim ended the <a href="http://biologos.org/blog/randomness-and-gods-governance-part-1">first installment </a>of his series on randomness and God’s governance by noting that “many Christians have a reaction to randomness that falls somewhere between uneasy and antagonistic” because they think that “taking randomness seriously means not taking God seriously.” While Pruim will continue to explore randomness as a mathematical concept, I’d like to approach the counterintuitive idea that God would “intentionally” use chance processes in his creative work by looking at the practice of John Cage, an artist whose music and visual art was built around the use of chance. One set of Cage’s visual works in particular—the New River Watercolor series from 1988—can help us think about how “allowing” for chance is actually an opportunity for positive and intimate engagement with the created world. I’d like to offer this instance of human making using randomness as an analogy for thinking about how God uses randomness in his own making, and suggest that “chance” is always both limited and guided by the intentions of the creator.  To do that, though, we need to spend a little time understanding how Cage used chance in his work.  </p>

<p>In the 1950s, Cage began using various methods of “casting lots” to determine how elements of his music would be chosen and arranged—principally the Chinese system of <em>I Ching</em>.  His controversial program was to distance himself from his own creative process, and he explored many additional strategies to transform the role of “creator” into one of “observer.” Most famous of these was his musical composition, “4.33,” which consisted of a pianist sitting at the instrument doing nothing at all for four minutes and thirty-three seconds, while musician and audience listened to the ambient sounds of the concert hall.  Yet contrary to that main thrust of Cage’s work, a description of the activities during the week-long residency at the Mountain Lake Workshop where the New River Watercolor Series were made suggests that choice, constraint, and intention were integral and inescapable tools in putting randomness to work for creative ends.</p>

<p>Here’s art historian and theorist Howard Risatti’s description of Cage’s plan of action for the New River Watercolors, from the <a href="http://www.raykass.com/html/Cage/cage01.html">website</a> 
 of artist Ray Kass, who runs the Mountain Lake program and was Cage’s collaborator for his work there:</p>

<blockquote><p>Following upon [a previous (1983) Mountain Lake workshop] “painting experiment,” stones collected from the New River were sorted into three groups according to size, which were separately numbered; numerous and varied brushes were divided into two separately numbered groups; likewise, feathers to paint with, colors and washes, and papers were also divided and numbered. In this way, chance procedures using pages of random numbers that were now generated by a computer program could be used to determine the specific materials utilized for each painting (e.g., which painting instruments, what type of paper and which colors, how many washes, which stones to paint around, where to locate the stones on the paper).</p>
</blockquote>

<p>While this list enumerates all the specific variables that Cage and his team submitted to chance, there was an incredible level of personal engagement with the materials: Cage didn’t just show us drawings of where the<em> I Ching</em> said the rocks ought to be, he (or his assistants) placed them on the paper and used them as guides to paint around. Large custom brushes were constructed to lay on washes of color, and even the paints were hand mixed, combined, and diluted according to his desires.</p>

<img src="http://biologos.org/uploads/static-content/Cage_2txt.jpg" alt="" height="604" width="250" style="float:right;margin:0px 0px 0px 10px;"  />

<p>Cage’s use of chance, then, was not a “hands off” process, but neither was it a matter of total control: Cage selected processes to create a space of play between himself and the materials he used: the feather between himself and the paper, for instance, introduced variability of resistance and spring, its ability to hold paint, the width of the line. All of these things were elements of material ‘freedom,’ areas in which Cage asked the stuff he used to make the paintings to take part in the process—to contribute its own identity to the intentional, purposeful, and determined work of creating “based on chance.”  This should not be surprising, as all art, all creation that we can observe, happens as a dialectic between materials and the creator, and such engagement and interaction in no way lessons the purpose of making, the end in sight.</p>

<p>Kass’ book <em>The Sight of Silence: John Cage’s Complete Watercolors</em>, gives a much more complete account of the tools, processes, and interpersonal reactions between Cage, Kass, and the team of student assistants who helped at almost every stage of the creation of the works. The book goes to great length to honor Cage’s ideal of being present in but not controlling the outcomes (not least by nearly always putting words like “choice” in quotation marks), but the description of his process makes the centrality of Cage’s personal aesthetic and artistic motives inescapable, even more than his physical engagement.  What comes through perhaps even more than the way Cage intended to allow chance to ‘guide the creative process’ is that way Cage, himself, not only set the parameters of the chance he allowed into the system, not only engaged directly with the materials during the process, but also exercised judgment over the results, both in process and at the end:</p>


<blockquote><p>“Cage decided he didn’t want the images of the stones to overlap or go off the sides of the paper. To guarantee this restriction, he created conditions and rules to limit their possible placements.” (p. 51)</p>
</blockquote>
<blockquote><p>“For this single painting [Series IV, #1, pictured above] Cage chose to confine the images of the rocks to a lower area of the paper that represented the proportion of the “golden rectangle. . .” (p. 57)</p>
</blockquote>
<blockquote><p>“While “choice” established much of the work’s nature, “chance” highlighted the intrinsic nature of the materials to reveal a refreshing presence.” (p. 59)</p>
</blockquote>
<blockquote><p>“[H]e initially decided to remove [the first painting of Series III] from the group, and then, liking it more, changed his mind and returned it to the group that would be signed.” (p. 56)</p></blockquote>

<p>This last note is particularly interesting in that it highlights the fact that Cage was claiming these paintings, naming himself as their author, and was attentive to which ones he approved of enough to call his own. There is no way around the fact that Cage was subjectively as well as objectively the maker of these works: the author of the procedures by which they came to be, but well as the judge (and sometimes redeemer) of the results.  For Cage, randomness was a tool, no different than the brushes or rocks or paints is that its specific parameters were chosen at the outset, and always used within the context of his over-arching vision.  Perhaps we may likewise think of God’s use of chance—constrained by and tuned to the material conditions he established at the birth of the cosmos—as a way to both engage with and allow freedom for the creation itself.</p>

<p>With any work of art it is reasonable to ask, “Is it beautiful?” or more tellingly,  “Would I hang this on my wall?”  Seeing Cage’s watercolors for first time without any knowledge of the process or the relative fame of Cage himself, some might be intrigued by the structure of the work (the proportions of the golden rectangle, the overlapping stone shapes, the colors of the paint) while others would be completely uninterested, perhaps even after hearing about how they were made and seeing them in the context of the rest of the New River Watercolor series.  But if you had been there in the shop as an assistant, or even observer, if you had been party to the relationships that developed even over the few days Cage spent at the Mountain Lake Workshop, your sense of the beauty of these paintings (and perhaps even scraps of paper Cage used to try out brushes or washes), would take on a different meaning, in much the way we treasure the crayon drawings of our children not because they are spectacular art, but because they are tokens of our relationship.  </p>

<p>I make that observation to emphasize one other aspect of Cage’s creative process: that Cage was the instigator first and foremost of <em>relationships</em> of creation.  His process created not only paintings but the fellowship that developed as the work was being done.  That social, interpersonal dimension is what gives the objects a depth of meaning beyond their material composition, and suggests the particular roles humanity has been given by God.  One role is to join into the creative process as lesser, but not unimportant co-creators with him; the other is to observe, recognize and celebrate his activity in the world. Where some will see randomness as evidence of an absent God, our knowledge of this most personal and participatory aspect of creation points us to the God who is with us.</p>

<p>With God’s creation as with human art, we may (or may not) marvel at any one particular “work,” or even think the specifics of how it was made are interesting or attractive; but knowledge of and fellowship with the artist transforms our appreciation of the process as well as its results.   When we know the maker, we come to recognize and treasure even the most “random” bits of his handiwork, and name them as his, nonetheless.</p>

<h3>For Further Reading:</h3>

<p>Ray Kass. <a href="http://books.upress.virginia.edu/detail%2Fbooks%2Fgroup-3985.xml?q=kass">The Sight of Silence: John Cage’s Complete Watercolors</a>, 2011.


<p><a href="http://www.johncage2012.com/watercolors.html">Website</a> for John Cage Centennial Festival, Washington, DC. September 2012.<br> </br>

<img src="http://biologos.org/uploads/static-content/Cage_3txt.jpg" alt="" height="207" width="500"  />

<br> </br>

]]></content:encoded>
        <pubDate>Sun, 13 May 12 12:53:04 -0700</pubDate>
        <dc:creator>Mark Sprinkle</dc:creator>
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        <title>Fearful Symmetries</title>
        <link>http://biologos.org/blog/fearful&#45;symmetries?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/fearful&#45;symmetries?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Perusing the writings of atheistic scientists and philosophers like Daniel Dennett, one could easily get the impression that arriving at a simpler explanation for something equates to a revelation that things are “lower, cruder, and more trivial.”</description>
        <content:encoded><![CDATA[<p>In his essay <a href="http://www.firstthings.com/article/2010/09/fearful-symmetries" target="_blank"><em>Fearful Symmetries</em></a>, published in the October 2010 issue of the journal <em>First Things</em>, physicist Stephen Barr offered a critique of the modern tendency to make the investigative strategy of reductionism into a “metaphysical prejudice.”  It is a mistake, he says, to take the extraordinary success of the scientific practice of looking at things in smaller and simpler parts as proof that “the further we push toward a more basic understanding of things, the more we are immersed in meaningless, brutish bits of matter.”</p>

<p>Perusing the writings of atheistic scientists and philosophers like Daniel Dennett, one could easily get the impression that arriving at a simpler explanation for something equates to a revelation that things are “lower, cruder, and more trivial.”  But at the heart of Barr’s critique is the observation that in fundamental physics and advanced mathematics, “simpler” does not mean more chaotic and inchoate, but rather more elegant and beautiful.  Those who hold to a philosophical reductionism “overlook the hidden forces and principles” that govern the processes of cosmic evolution.</p>

<p>Barr’s article lays out the way that the work of scientists and mathematicians exploring the fundamental principles of physics (from Kepler to Einstein to those currently running the Large Hadron Collider in Switzerland) actually suggests “that order does not really emerge from chaos, as we might naively assume; it always emerges from greater and more impressive order already present at a deeper level.”  This excerpt gives his first example, the starting point from which he guides us into strangely beautiful world of particle physics, and towards the discovery that “matter, although mindless itself, is the product of a Mind of infinite profundity and infinite simplicity.”</p>

<h3>Fearful Symmetries</h3>

<blockquote><p>“Let’s start with a simple but instructive example of how order can appear to emerge spontaneously from mere chaos through the operation of natural forces. Imagine a large number of identical marbles rolling around randomly in a shoe box. If the box is tilted, all the marbles will roll down into a corner and arrange themselves into what is called the “hexagonal closest packing” pattern. (This is the same pattern one sees in oranges stacked on a fruit stand or in cells in a beehive.) This orderly structure emerges as the result of blind physical forces and mathematical laws. There is no hand arranging it. Physics requires the marbles to lower their gravitational potential energy as much as possible by squeezing down into the corner, which leads to the geometry of hexagonal packing.</p>

<p>At this point it seems as though order has indeed sprung from mere chaos. To see why this is wrong, however, consider a genuinely chaotic situation: a typical teenager’s bedroom. Imagine a huge jack tilting the bedroom so that everything in it slides into a corner. The result would not be an orderly pattern but instead a jumbled heap of lamps, furniture, books, clothing, and what have you.</p>

<p>Why the difference? Part of the answer is that, unlike the objects in the bedroom, the marbles in the box all have the same size and shape. But there’s more to it. Put a number of spoons of the same size and shape into a box and tilt it, and the result will be a jumbled heap. Marbles differ from spoons because their shape is spherical. When spoons tumble into a corner, they end up pointing every which way, but marbles don’t point every which way, because no matter which way a sphere is turned it looks exactly the same.</p>

<p>These two crucial features of the marbles—having the same shape and having a spherical shape—should be understood as principles of order that are already present in the supposedly chaotic situation before the box was tilted. In fact, the more we reduce to deeper explanations, the higher we go. This is because, in a sense that can be made mathematically precise, the preexisting order inherent in the marbles is greater than the order that emerges after the marbles arrange themselves. This requires some explanation.</p> 

<p>Both the preexisting order and the order that emerges involve symmetry, a concept of central importance in modern physics, as we’ll see. Mathematicians and physicists have a peculiar way of thinking about symmetry: A symmetry is something that is done. For example, if one rotates a square by 90 degrees, it looks the same, so rotating by 90 degrees is said to be a symmetry of the square. So is rotating by 180 degrees, 270 degrees, or a full 360 degrees. A square thus has exactly four symmetries.</p>

<p>Not surprisingly, the hexagonal pattern the marbles form has six symmetries (rotating by any multiple of 60 degrees: 60, 120, 180, 240, 300, and 360 degrees). A sphere, on the other hand, has an infinite number of symmetries—doubly infinite, in fact, since rotating a sphere by any angle about any axis leaves it looking the same. And, what’s more, the symmetries of a sphere include all the symmetries of a hexagon.</p>

<p>If we think this way about symmetry, careful analysis shows that, when marbles arrange themselves into the hexagonal pattern, just six of the infinite number of symmetries in the shape of the marbles are ex-pressed or manifested in their final arrangement. The rest of the symmetries are said, in the jargon of physics, to be spontaneously broken. So, in the simple example of marbles in a tilted box, we can see that symmetry isn’t popping out of nowhere. It is being distilled out of a greater symmetry already present within the spherical shape of the marbles.”</p></blockquote>

<p>In the full essay, Barr gives a richer description of how this most basic kind of symmetry is just one sort of order, and how even this form points to other much more complex kinds of symmetry whose properties may be described only through the tools of complex mathematics. As he says, “the symmetries that characterize the deepest laws of physics are mathematically richer and stranger than the ones we encounter in everyday life.” But even more important than the fact that such mathematical concepts exist and are beautiful, more important even than the way such esoteric mathematical symmetries have suggested imminently practical experimental projects, is the way they point to a universe that is anything but brutish and trivial, though its elegance may be hard to see:</p>
 
<blockquote><p>“It is true that the cosmos was at one point a swirling mass of gas and dust out of which has come the extraordinary complexity of life as we experience it. Yet, at every moment in this process of development, a greater and more impressive order operates within—an order that did not develop but was there from the beginning. In the upper world, mind, thought, and ideas make their appearance as fruit on the topmost branches of an evolutionary tree. Below the surface, we see the taproots of reality, the fundamental laws of physics that shimmer with ideas of profound simplicity.”</p></blockquote>

<p class="intro">This essay appears with the permission of <a href="http://www.firstthings.com/" target="_blank"><em>First Things</em></a>.  To read Barr’s complete essay, please click <a href="http://www.firstthings.com/article/2010/09/fearful-symmetries" target="_blank">here</a>.</p>]]></content:encoded>
        <pubDate>Thu, 15 Mar 12 04:59:59 -0700</pubDate>
        <dc:creator>Stephen Barr</dc:creator>
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        <title>Beginning with the End in Mind</title>
        <link>http://biologos.org/blog/evolutionary&#45;convergence?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
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        <description>In today&apos;s video, Oxford physicist Ard Louis discusses the famous debate between renowned evolutionary biologists Stephen Jay Gould and Simon Conway Morris over the idea of evolutionary convergence.</description>
        <content:encoded><![CDATA[<p align="center"><iframe src="http://player.vimeo.com/video/33680427?title=0&amp;byline=0&amp;portrait=0" width="571" height="321" frameborder="0" webkitAllowFullScreen mozallowfullscreen allowFullScreen></iframe></p>

<p class="intro">Today's video is courtesy of filmmaker Ryan Pettey, director/editor of Satellite Pictures and features physicist Ard Louis.</p>

<p>In today's video, Oxford physicist Ard Louis discusses the famous debate between renowned evolutionary biologists Stephen Jay Gould and Simon Conway Morris. Gould believed (and wrote in his book <em>Wonderful Life</em>) that if the "tape" of evolution were rerun, the chance that anything like human intelligence would emerge is essentially zero. In other words, humanity is here through random accident. Gould pointed to the work of Morris and fellow scientists in their research of the Burgess Shale as evidence for this view.</p>

<p>However, Morris himself disagrees, pointing to what is called evolutionary convergence. As Morris notes, there are numerous examples of identical features evolving multiple times throughout the history of life independently. Morris believes that if the tape of life were replayed, we would see something like humans emerge. A Christian might say, it looks like we were planned.</p>


<p>Some Christians might find Simon Conway Morris' viewpoint, with its implicit teleology, more attractive. Others, perhaps motivated by a high view of providence, may find Gould's emphasis on contingency equally congenial to their faith.  What do you think?</p>]]></content:encoded>
        <pubDate>Thu, 15 Dec 11 05:51:27 -0800</pubDate>
        <dc:creator>Ard Louis</dc:creator>
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        <title>Dead Bones with a Living Message</title>
        <link>http://biologos.org/blog/our&#45;family&#45;tree?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
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        <description>In this video, Pääbo covers a lot of ground, noting several lines of genetic evidence for the evolution of modern humans from earlier hominids in Africa, as well as for the interbreeding between early humans and Neanderthals.</description>
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<p>As we noted in <a href="http://biologos.org/blog/biologos-and-the-june-2011-christianity-today-cover-story">our response</a> to the June article in <em>Christianity Today</em> “The Search for the Historical Adam,” the evidence for gradual creation is overwhelming, with more studies supporting the evolutionary process being published each year. We’ve looked at many of these evidences: from fossils, from comparative anatomy, from genetics. Today, we’d like to highlight for our readers a compelling video from the annual TED Conference featuring geneticist Svante Pääbo. You may remember Pääbo from his efforts to extract and sequence DNA from 30,000(+) year old Neanderthal bones (we mentioned his work <a href="http://biologos.org/blog/a-geneticists-journey">here</a>).</p>

<p>In this eighteen minute video, Pääbo covers a lot of ground, noting several lines of genetic evidence for the evolution of modern humans from earlier hominids in Africa, as well as for the interbreeding between early humans and Neanderthals. We’ve covered some of this data before, but it’s particularly compelling to hear it described by one of the scientists leading the field of study.</p>

<p>However, our goal at The BioLogos Foundation isn’t just to make the Church aware of the fascinating and convincing scientific evidence for gradual creation. As we have said <a href="http://biologos.org/blog/a-geneticists-journey">before</a>:</p>

<blockquote><p>BioLogos exists to help Christians think carefully about the ramifications of these new data in light of long-standing traditional ways of viewing human creation. We have some re-thinking to do, but it can be done and will be done within the context of a Christian faith that is fully orthodox and thoroughly evangelical. Any time we draw closer to truth, to God’s truth, we have nothing to fear. There is still much to learn, but we can look back at what we have learned with awe—absolute awe.</p></blockquote>

<p>It is truly amazing that we know so much now about our early days.  For example, Africans do not have DNA which is specifically derived from Neanderthals, whereas people in the rest of the world do carry a small amount.  This confirms the picture of human history derived from studying fossils.  Neanderthal bones have not been found in Africa, so it isn’t surprising that their DNA is not there either.  The fact that non-Africans have some of the DNA found in Neanderthal bones confirms that which geneticists knew from other studies: we have two distinct groups of human ancestors—those who left Africa in ancient times and those who stayed.</p>

<p>God chose to reveal himself and to begin working with a distinct sub-group of ancient  humans, those descended from Abraham and Sarah.   To Abraham, God made a marvelous promise.   Drawing his attention to the stars above, God said that someday Abraham’s descendents would outnumber the countable stars in the universe.  And so it came to be.  Indeed through our adoption into the family, we are all children of Abraham.  The God of Abraham is our God too and each one of us is one of those stars too numerous for Abraham to count.</p>

<p>Sometimes, it seems that we are uncomfortable with the notion that God made us through a gradual process that included apes in our family tree.  It is almost as though we would prefer dirt to apes.  Perhaps, in at least some cases, this is due to an inadequate appreciation for the fact that God loves, really loves, all of creation, not just us.  As special as we know we are, we can’t read Psalm 104, Genesis 1, Genesis 9 (where the covenant is not just with Noah but with all living creatures), or Job 38-41 without being reminded that <em>all</em> living creatures are God’s creation (see <a href="http://biologos.org/blog/creation-which-creation">here</a>).  The Neanderthals, the Denisovans, <em>Homo erectus</em>, and the australopithecines were God’s creation too!  Still, we modern humans have been singled out.  We’ve been <em>called</em> out.</p>

<p>True our family tree, as Pääbo shows here, is intriguing.  But let us never forget, that the most important thing about this tree is that God is the vine which exists at its core, and we are called to be the branches which bear fruit.  The fact that many of us have a small amount of Neanderthal DNA, some of us have Denisovan DNA, and others have neither is interesting, but it is really just a side issue for people of faith.  As a result of God’s visit to Abraham, followed eventually by God’s taking on flesh in the person of  Jesus of Nazareth, we can all know God as our heavenly Father.  We are children of God and as such, we are God’s representatives.  We are called to image God.  We are called to love God.  And we are called to love each other and to deeply respect all that he has made.</p>]]></content:encoded>
        <pubDate>Tue, 29 Nov 11 11:00:18 -0800</pubDate>
        <dc:creator>Darrel Falk, Mapes, Stephen</dc:creator>
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        <title>Series: Understanding Evolution</title>
        <link>http://biologos.org/blog/series/understanding&#45;evolution?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/understanding&#45;evolution?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>This blog series by Dennis Venema undertakes the task of clarifying numerous aspects of evolution that often become misconstrued by Christians. He first discusses the idea of speciation in a population over time, later applying it to the speciation process that occurred among hominids (human ancestors) which led to modern humans. He continues to support this idea by exploring so called “Mitochondrial Eve,”“Y Chromosome Adam” and other compositional clues of the human genome.</description>
        <content:encoded><![CDATA[<h3>Geographic isolation and reproductive barriers</h3>
<p>As we have seen, speciation (the events that lead to reproductive isolation between populations of organisms) can be a prolonged and complex process. Populations can become isolated geographically (e.g. through migration) and begin to accumulate genetic differences that may raise a barrier to reproduction between them. This barrier may only be a partial barrier, however. The stickleback populations we discussed previously are an example: the first event leading to speciation was physical separation when some marine fish colonized new freshwater habitats. Even after significant differences accumulated between the marine and freshwater forms, a second wave of colonization of fresh water by the marine form brought the two groups into contact again, leading to some genetic exchange even as the two groups remained largely distinct. At the point of the second colonization, whether one or two species is/are present is a point of discussion: the case can be made for either.  A scientist arguing for one species would point out that the two groups can still produce fertile offspring, whereas a colleague might argue for two based the distinct characteristics and ecological niches of the two populations, as well as the observation that the hybrids resulting from interbreeding are not as well adapted to either niche. The point is clear: speciation, as a slow process, is a <em>gradient</em>, and a clear line of demarcation cannot be drawn on a gradient. To return to our flip-book analogy, every adjacent page is only slightly different from the pages on either side. If we compare widely separated pages, the differences are clear. The point is that there is no single page in between them that we can identify as the point where the images “became different.”</p>

<p>While this discussion might seem a little academic and uninteresting (perhaps because one might discount such events as mere ‘microevolution’ of sticklebacks), we have recently learned that similar events shaped human speciation. As far as we can tell, sticklebacks are not aware of, nor concerned about, the theological implications of how they came to be, but we certainly are for our own species (and perhaps even for sticklebacks). What was once an area of interest mainly for specialists is about to become a topic of intense discussion among evangelicals: we have only recently learned that a portion of the lineage leading to modern humans interbred with other hominid species they encountered as they migrated out of Africa ~50,000 years ago. In order to explain what happened, let’s pick up the tale at an earlier point, around 450,000 years earlier.</p>

<h3>Out of Africa, twice over</h3>
<p>Somewhere between 500,000 and 300,000 years ago, the ancestors of the Neanderthals (<em>Homo neanderthalensis</em>) left Africa and migrated into the Middle East region, and from there on to Europe and parts of Asia. (Recall that human ancestors, at this point, are all still in Africa, and will stay put until around 50,000 years ago). Neanderthals persisted in the Middle East and Europe until ~30,000 years ago, meaning there was a time where the humans leaving Africa about 50,000 years ago could have interbred with them before they went extinct. This remained an open question until techniques improved to recover and sequence ancient DNA. It is now possible to obtain and sequence DNA from Neanderthal remains, and the complete genome sequence of Neanderthals was published in early 2010. The results were fascinating: DNA sequence comparisons between the two species indicates that modern, non-African humans have about 1-4% Neanderthal DNA in their genomes. This variation, however, is not present in sub-Saharan Africans, since they are descended from humans that did not leave Africa and and thereby, because of geographical separation, never had the opportunity to interbreed with Neanderthals. We also know that the group that left Africa went through a reduction in population size to a about  1200 individuals (a genetic bottleneck), whereas those that stayed behind maintained a larger  population size (about 6000) over the same period.</p>

<h3>New details</h3>
<p>In addition to this information, we have recently discovered a new hominid species from Asia, as Darrel Falk recently <a href="http://biologos.org/blog/a-geneticists-journey">highlighted</a> here on BioLogos. This species, named the “Denisovans” is known to us only from a few bone fragments and one molar, but - wonder of wonders in this age of paleogenomics - this was enough for us to determine its complete genome sequence. The results were, again, fascinating: the Denisovans are relative of Neanderthals that split off from them after their common ancestor left Africa. The Neanderthals went west to Europe, and the Denisovans colonized Asia (and evidence suggests they were quite widespread). Even more interesting is that comparing Denisovan and human DNA indicates that some humans (modern Melanesians) have about 5% Denisovan DNA in their genomes. This variation is not found in Europeans or Africans.</p>

<h3>Putting the story together</h3>
<p>Assembling all of this information reveals the following tale: the common ancestor of Neanderthals and Denisovans migrated from Africa to the Middle East between 500,000 and 300,000 years ago, leaving a population behind that would eventually become modern humans (at around 200,000 years ago). In the Middle East, the populations destined to become Neanderthals and Denisovans part ways, with their differences accumulating over the next several hundred thousand years to make them distinct species. When a population of modern humans leave Africa around 50,000 years ago, they encounter, and breed with, Neanderthals shortly after. This genetic exchange is small, since there are partial reproductive barriers in place, but a small fraction of Neanderthal DNA becomes established in this lineage. Groups from this population then part ways, with some migrating into Europe and others into Asia. This latter group then encounters the Denisovan hominids, interbreeds with them, and a fraction of Denisovan DNA takes hold as a result. This population goes on to colonize southeast Asia, Oceania and Australia, where we see this variation today in Melanesians.  Modern humans thus have different evolutionary trajectories: Melanesians have both Neanderthals and Denisovans in their lineage, Europeans have Neanderthals, and Africans have neither.</p>

<h3>New data, new questions</h3>
<p>Even as I stand amazed in what God has revealed to us about our origins through science,  I know that this new information will be difficult for some within the evangelical community to accept. Moreover, it is almost certain that some Christian groups, unfortunately, will misrepresent this data to their constituents (whether intentionally or not), and thus spread confusion that hinders the needed theological conversation. Still, I have reason for hope: God has seen it fit to reveal this information to us, and that suggests that He believes the evangelical Christian community is ready for this conversation to happen. As Darrel mentioned at the end of his <a href="http://biologos.org/blog/a-geneticists-journey">recent piece</a>, we at BioLogos want to assist our evangelical sisters and brothers in this conversation in any way we can, in full confidence that it can be done in an edifying way:</p>

<blockquote><p>BioLogos exists to help Christians think carefully about the ramifications of these new data in light of long-standing traditional ways of viewing human creation. We have some re-thinking to do, but it can be done and will be done within the context of a Christian faith that is fully orthodox and thoroughly evangelical. Any time we draw closer to truth, to God’s truth, we have nothing to fear. There is still much to learn, but we can look back at what we have learned with awe—absolute awe.</p></blockquote>]]></content:encoded>
        <pubDate>Fri, 28 Oct 11 08:25:23 -0700</pubDate>
        <dc:creator>Dennis Venema</dc:creator>
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        <title>Evolution: Is God Just Playing Dice?</title>
        <link>http://biologos.org/blog/evolution&#45;is&#45;god&#45;just&#45;playing&#45;dice?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/evolution&#45;is&#45;god&#45;just&#45;playing&#45;dice?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>With his standard panache, the late Harvard paleontologist Stephen J. Gould argued strenuously that evolution had no inherent directionality. We are mere accidents; a &quot;tiny twig on an improbable branch of a contingent limb on a fortunate tree&quot;.</description>
        <content:encoded><![CDATA[<p class="intro">This article first appeared on <a href="http://www.huffingtonpost.com/matt-j-rossano/evolution-is-god-just-pla_b_986984.html" target="_blank">The Huffington Post</a>.</p>

<blockquote><p>"Reply the tape a million times ... and I doubt that anything like Homo sapiens would ever evolve again"  (Stephen Jay Gould from "Wonderful Life", 1989 p. 289, Harvard University Press.).</p></blockquote>

<p>With his standard panache, the late Harvard paleontologist Stephen J. Gould argued strenuously that evolution had no inherent directionality. It was a cosmic crapshoot - in no way destined to produce anything complex, self-conscious or human. We are mere accidents; a "tiny twig on an improbable branch of a contingent limb on a fortunate tree" ("Wonderful Life" p. 291). Highly fortunate indeed! Eons ago, a dinosaur-dominated earth held little promise for mammalian ascendancy (let alone primates or humans). Our distant ancestors might have remained little more than scurrying nuisances nipping at the feet of giants if not for a most unlikely calamity - a massive meteor strike which swept away the dinos and forever altered the earth's bio-saga. Who would have guessed? </p>

<p>Evolution's capricious nature seemed to represent a severe stumbling block for the Abrahamaic religious traditions. In their narrative, humans represented the culmination of God's creative work - the very purpose for creation itself. But evolution is an awfully shoddy way of enacting a divine plan. Gould delighted in annoying the faithful by emphasizing this very point:  </p>

<blockquote><p>"Odd arrangements and funny solutions are the proof of evolution - paths that a sensible God would never tread but that a natural process, constrained by history, follows perforce" ("The Panda's Thumb", 1980, pp. 20-1). </p></blockquote>

<p>Theologians, however, were quick to point out that the chance element in evolution was neither new nor necessarily contrary to the Judeo-Christian view of God. Human history was replete with chance; evolution only extended the theme. Moreover, chance allowed for freedom - a virtue high on God's agenda. However theologically sound these retorts may have been, their force was often lost on the average believer. The accidental nature of human existence provided just another reason to reject evolution altogether in order to preserve God's special concern for humanity.  </p>

<p>Gould was a talented science writer, but he overplayed evolution's whimsy. Increasingly, science is showing that the evolutionary process has many built in constraints which limit its possibilities and bias its pathways. Take, for example, the ubiquitous phenomenon of convergence - the tendency for highly diverse species to independently evolve similar adaptive (analogous, not homologous) traits. Most of us are familiar with the saber-toothed tiger, the scourge of our hominin ancestors. Less familiar are a group of South American marsupials called the thylacosmilids who independently evolved similar protruding saber-teeth. Convergence can also be seen in a number of specifically human traits. For example, we share a mode of locomotion, bipedalism, with birds, kangaroos, and some dinos. The lateralized and convoluted structure of our brains can also be found in octopi, this despite the fact that vertebrates and cephalopods diverged from one another over 450 million years ago. </p>

<p>In his book "Life's Solution" (2003, Cambridge Press) Cambridge Palaeobiologist Simon Conway Morris documents scores of examples of convergent evolution from insect body designs to the social systems of dolphins and chimpanzees (both fission-fusion). The important lesson is that there are only a limited number of ways that evolution can solve the adaptive problems posed by the earth's ecosystems. Time and again, evolution stumbles upon the same general design features from which to fashion adaptive traits.</p>

<p>Now add to this the Baldwin effect - an idea originally proposed in 1896 wherein organisms are posited to actively shape their own selective forces. For example, suppose some fairly intelligent primates begin fashioning tools, giving them access to new resources and a competitive advantage over non-tool users. Any genetic predisposition facilitating tool use would also be positively selected. </p>

<p>A severe limitation on Baldwin effects has always been the unpredictability of genetic mutation. For any heritable genetic changes to occur (so the thinking has always been) our tool wielding primate would just have to wait around and hope for a lucky "tool use" mutation to pop up. But maybe not. Two recent books, Jablonka and Lamb's "Evolution in Four Dimensions" (2005 MIT press) and Kirschner and Gerhart's "The Plausibility of Life" (2005, Yale University Press) discuss connections between recent work in genetics and Baldwinian processes. What if the primate's tool use actually raised the probability that a tool-relevant genetic change would take place which could then be passed along to offspring?     </p>

<p>Recent genetic research (in a field called epigenetics) shows that experiences occurring over one's lifetime can produce heritable genetic changes. For example, mice exposed to two weeks of environmental enrichment (more social interaction, activity, novel objects to explore) show evidence of enhanced memory function (not surprising). More surprising is that their offspring also show evidence of enhanced memory even though they were never exposed to environmental enrichment (Journal of Neuroscience, 29, p. 1496). Thus, the increased environmental stimulation created a genetic change in the parents that was then transmitted to offspring. This change appears to involved altered patterns of gene regulation (how genes are turned on and off during development). Similar effects have been noted in humans (see European Journal of Human Genetics, 14, p. 159). </p>

<p>Convergence, epigenetic inheritance, and Baldwin effects are only a few of the mechanisms serving as directional constraints on evolution's pathways. In his review of the various factors affecting the evolutionary process, anthropologist Melvin Konner concludes:</p>

<blockquote><p>"There are no intrinsic <strong>driving</strong> factors in evolution, but there are intrinsic constraints and canalized paths along which either evolution or development may more easily proceed" ("The Evolution of Childhood," Harvard Press, 2010, p. 59, emphasis in original). </p></blockquote>

<p>Of course, none of these constraining factors guarantee our arrival on the evolutionary stage. They do, however, raise the odds that in time a complex, rational, self-aware creature capable of entertaining both scientific and religious ideas might emerge. </p>

<p>The more we understand evolution, the less it seems like neither the bogeyman that creationists fear nor the universal God-dissolving acid some atheists crave.</p>]]></content:encoded>
        <pubDate>Tue, 11 Oct 11 05:00:54 -0700</pubDate>
        <dc:creator>Matt J. Rossano</dc:creator>
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        <title>From Chaos to Order: The Random Process as the &quot;Precision Tool&quot;of God</title>
        <link>http://biologos.org/blog/understanding&#45;random?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/understanding&#45;random?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>For many, the importance of apparent randomness in evolution can be a major stumbling block when considering whether God could have created through an evolutionary process.</description>
        <content:encoded><![CDATA[<p>For many, the importance of apparent randomness in evolution can be a major stumbling block when considering whether God could have created through an evolutionary process. After all, if God created for a purpose, how could there be room for “unguided and purposeless” processes? Aren’t randomness and design naturally opposed?</p>

<p>While these are indeed complex questions, some of the problems do stem from misunderstandings about what randomness means in a scientific sense and what role it plays in evolution. To help clarify some of these details, we offer these resources.</p>

<p align="center"><iframe src="http://player.vimeo.com/video/22675654?title=0&amp;byline=0&amp;portrait=0" width="533" height="300" frameborder="0"></iframe></p>

<p>The “Randomness” installment of our Distinctions series (first posted earlier this year) looks at some of the basic misconceptions about the role of randomness in evolution. While it is understood by many simply to mean blind, undirected and purposeless, in truth, randomness is far more complex and awe-inspiring than this overly-simplified definition. Whether through genetic mutations or the combinations that occur between sperm and eggs, these processes can be seen as the continual unfolding of something that is decidedly not random--creation itself. Randomness, in essence, generates certainty.  This is further illustrated in the second video. </p>

<p align="center"><iframe src="http://player.vimeo.com/video/25365944?title=0&amp;byline=0&amp;portrait=0" width="533" height="300" frameborder="0" webkitAllowFullScreen allowFullScreen></iframe></p>

<p>In the clip “Randomness” from the upcoming film <em>A Leap of Truth</em> by Ryan Pettey, Richard Colling, Ard Louis, and John Polkinghorne offer several examples of random processes leading to order rather than disorder. As Dr. Louis points out, the scientific definition of “randomness” is quite different from our everyday understanding of the word. In fact, random generation is the most efficient way to generate complexity. Polkinghorne further notes that we live in a world where the balance of random mutations is almost perfectly tuned for fruitful life on Earth.  This, we learn, is God's process:  Randomness given time, can lead to that which is nearly certain.  </p>

<p>This is beautifully illustrated in the following re-post from last year.  Here, in a blog called "That's Random,"  Kathryn Applegate offers two examples of random motion leading to certainty in the process of assembling a virus.  Because random processes can lead to that which is almost certain, it is not at all surprising that this has frequently been used by God over billions of years to create order out of chaos--God's creation, by God's way, in God's time. </p>

<h3>That's Random</h3>

<p>You hear it all the time: “That’s so random!” When used by people of my generation, the word “random” can simply mean “cool” or “surprising.” Or it can mean something like “disconnected,” as in the phrase, “I had a random thought” (which returns 189,000 hits on Google, by the way—random!).</p>

<p>Despite this usage, most of us know that randomness has something to do with probability, and that it often implies a lack of conscious intentionality. But what do mathematicians and scientists mean when they say something is random? Can a random process lead to an ordered, even predictable outcome? Is there evidence that God makes use of random processes to fulfill his creative purposes?</p>

<p>These are big questions, and we won’t address them all today. But I think randomness is an important topic to cover for two reasons: 1) it is integral to many processes in biology (and math, physics, chemistry, etc.), and 2) it is commonly misunderstood to be incompatible with Christianity.</p>
<p>As I said above, most of us know that randomness has something to do with probability.  If you pick a card “at random” from a shuffled deck, you have a small probability of drawing an ace (4 out of 52, or a 7.7% chance).  If you flip a coin, you have an equal probability of getting heads or tails.</p>
<p>Randomness also seems to imply a lack of intentionality or purposefulness.  After all, you might hope for an ace when you draw a card, but you can’t choose one on purpose.  You might call heads when you flip a coin, but you can’t know beforehand what the outcome will be.  Thus the outcome is <em>indeterminate</em>, but is it purposeless?  Not necessarily.  Indeterminacy simply means the result cannot be predicted from the outset.</p>  
<p>It should be noted that indeterminacy does not imply that God does not have foreknowledge of future events.  Christians ought not to be uncomfortable with the idea of God interacting with his creation through chance.  We often describe a seemingly-random (i.e. unplanned by us) sequence of events as being “providential,” or planned by God.  A good introduction to the way divine action could drive physical processes can be found in this <a href="http://biologos.org/questions/evolution-and-divine-action/">Question</a>.</p>
<p>In biology, it is very hard or impossible to calculate precise probabilities for most processes, so when we say a process is random, we typically mean it is extremely unpredictable.  Eventually we will discuss randomness within biological evolution, but first we must consider some simpler processes, like the self-assembly of a virus.</p>
<p>Viruses are remarkably efficient entities.  Coiled tightly within a protein-based shell is a small amount of DNA needed for self-replication.  The shell, called a capsid, is made of many repeating protein subunits and is therefore highly symmetrical (see figure).  Important biomedical insights have certainly been gleaned from structural studies of viruses, but viruses also teach us about the emergence of order from non-order.</p>  
<p>The virus life cycle has four main steps: 1) enter a host cell, 2) hijack the cell’s replication and translation machinery to make many copies of itself, 3) assemble into many virus particles, and 4) exit the cell to invade another host.</p>
<p>When I first learned about this process, I found it very hard to believe it just “happens.”  The idea that a bunch of molecules bumping into each other inside a crowded cell could spontaneously assembly into a fully-functional virus seemed a bit far-fetched.  Many viral capsids have over 100 protein subunits that must interact with each other in just the right way, or it won’t work.  Surely there must be something driving this process, right?</p>
<p>There is!  Random motion.  I had to see it to believe it.  I distinctly remember sitting in class during my first year of graduate school when the professor demonstrated self-assembly of a virus using a 3D <a href="http://models.scripps.edu/" target="_blank">model</a> as shown in the following video.  In less than 30 seconds, you can watch a jumbled heap of proteins become a beautifully ordered structure.</p>
<p align="center"><object width="480" height="385"><param name="movie" value="http://www.youtube.com/v/X-8MP7g8XOE&hl=en_US&fs=1&rel=0"></param><param name="allowFullScreen" value="true"></param><param name="allowscriptaccess" value="always"></param><embed src="http://www.youtube.com/v/X-8MP7g8XOE&hl=en_US&fs=1&rel=0" type="application/x-shockwave-flash" allowscriptaccess="always" allowfullscreen="true" width="480" height="385"></embed></object></p>
<p>As the narrator explains, sub-assemblies form and break apart en route to the most stable structure, the full capsid.  As the sub-assemblies begin to form, further associations with free subunits become more favorable and as a result occur rapidly, while the final steps may take considerably longer.  While the subunits in the model are rigid, in reality the proteins take on multiple conformations, allowing the capsid to “breathe.”</p>
<p>Amazing as it is, the system we just considered—one virus capsid in a jar—is pretty simple.  One wonders how self-assembly can happen in a crowded cell, where there are countless other molecules diffusing around, potentially getting in the way.  We can’t directly <em>see</em> how it happens in a cell, but we can reconstitute the process in a test tube using different combinations of constituent molecules.</p>
<p>Consider two viruses, where each protein subunit in one virus is the mirror image of the corresponding subunit in the other.  Putting the two viruses together by hand would be pretty tricky, because the constituent parts look so similar.  But random motion can do the job in short order:</p>
<p align="center"><object width="480" height="385"><param name="movie" value="http://www.youtube.com/v/YbpTusoDEgA&hl=en_US&fs=1&rel=0"></param><param name="allowFullScreen" value="true"></param><param name="allowscriptaccess" value="always"></param><embed src="http://www.youtube.com/v/YbpTusoDEgA&hl=en_US&fs=1&rel=0" type="application/x-shockwave-flash" allowscriptaccess="always" allowfullscreen="true" width="480" height="385"></embed></object></p>
<p>From this model, we can see clearly, in real-time, how distinct complex structures can arise from their parts randomly interacting with one another.  Many large viruses also use special scaffolding proteins to assist in the assembly process, and some even use their own genomes as a scaffold.  In addition, two closely-related viruses that happen to infect the same cell can exchange parts to create a new virus.  This is one way viruses can evolve quickly to evade the host’s immune system.</p>
<p>Here we have seen how viruses demonstrate a principle inherent in God’s world—that order can emerge out of chaos from random processes.</p>]]></content:encoded>
        <pubDate>Tue, 13 Sep 11 22:00:20 -0700</pubDate>
        <dc:creator>Ryan Pettey</dc:creator>
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        <title>Ask an Evolutionary Creationist: A Q&amp;A with Dennis Venema</title>
        <link>http://biologos.org/blog/ask&#45;an&#45;evolutionary&#45;creationist&#45;a&#45;qa&#45;with&#45;dennis&#45;venema?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/ask&#45;an&#45;evolutionary&#45;creationist&#45;a&#45;qa&#45;with&#45;dennis&#45;venema?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Even if Darwin had never lived and no one else had come up with the idea of common ancestry, modern genomics would have forced us to that conclusion even if there was no other evidence available.</description>
        <content:encoded><![CDATA[<p class="intro">This week, BioLogos senior fellow Dennis Venema participated in Rachel Held Evans' ongoing "Ask a..." series for her website (where these answers were <a href="http://rachelheldevans.com/ask-an-evolutionary-creationist-response" target="_blank">first posted</a>). After asking her readers to suggest questions they had about science, faith, and evolutionary creation, Rachel selected the seven best for Dennis to respond to. Below are his answers, which Rachel describes as "challenging, accessible, and full of grace." For more from Rachel's "Ask a..." series, be sure to visit her <a href="http://rachelheldevans.com/" target="_blank">website</a>.</p>

<p><strong>1. From Scot: Could you explain the difference between creationism, intelligent design, and "evolutionary creationism"?</strong></p>

<p>“Creationism” is one of those words that almost always needs clarification. For many, “creationism” is synonymous with Young-Earth Creationism, the view that the Genesis narratives are to be taken literally. This view holds that the entire cosmos is around 6,000 years old, that the fossil record was laid down almost in its entirety during a literal, global worldwide flood, that God created humans directly out of dust, and that Adam and Eve are the progenitors of the entire human race. The organization Answers in Genesis is probably the best-known proponent of this view. </p>

<p>Old-Earth Creationism typically holds to a local flood, and accepts Big Bang cosmology. Despite agreeing with mainstream science on these issues, they deny evolution: they believe that the vast majority of species (and especially humans) were independently created by God during earth’s long history. Old-earthers also hold to a literal Adam and Eve as the progenitors of our entire species. Reasons to Believe is the best-known organization that promotes this view. You can read one of my (somewhat technical) critiques of their anti-evolutionary genetics arguments <a href="http://biologos.org/blog/an-evangelical-geneticists-critique-of-reasons-to-believe-pt-1">here</a>. </p>

<p>Intelligent Design (ID) is a view that many feel is a form of creationism, though the ID Movement itself often rejects the label, claiming that it is strictly an alternative scientific view. The ID Movement is a “Big Tent” approach for all and sundry who reject at least some part of evolutionary biology. As such, there are Young-Earth Creationists, Old-Earth Creationists, and others within the movement. The main ID view is that some features of life are too complex to be the result of evolution, thus indicating that they were “designed” – a word that functions as the equivalent of “created” within this group. The Discovery Institute is the best-known organization for promoting ID. I’ve spent a lot of time critiquing the ID movement, and you can find  much of that material on the <a href="http://biologos.org/search/results/e59904ec0c26784a3ff4159cf0e775a8/">BioLogos web site</a> (do an author search there using my name).</p>

<p>Despite their (large) differences, all of the above positions deny some aspect of modern science. The only Christian perspective on origins that fully accepts mainstream science is the Evolutionary Creation / Theistic Evolution view. This view holds that science is not an enemy to be fought, but rather a means of understanding some of the mechanisms God has used to bring about biodiversity on earth. This view accepts that humans share ancestry with all other forms of life, and that our species arose as a population, not through a single primal pair. There are different views within the EC community on whether there was a historical couple named Adam and Eve – some hold that there was, and that they were selected by God from a larger population as representatives. Other folks in the EC community feel that Adam and Eve are typological figures,  such as a representation of the failure of Israel to keep the covenant. The science (human population genetics) is clear that our species arose as a population, and that is what I have focused on (since that is my area of expertise). I try to leave the theology to others, but often folks want to talk theology on these points, not science.</p>

<p><strong>2.  From Paige: What has been the most compelling evidence for you personally that has solidified your position as an evolutionary creationist?</strong></p>

<p>Well, the evidence is everywhere. It’s not just that a piece here and there fits evolution: it’s the fact that virtually none of the evidence we have suggests anything else. What you see presented as “problems for evolution” by Christian anti-evolutionary groups are typically issues that are taken out of context or (intentionally or not) misrepresented to their non-specialist audiences. For me personally (as a geneticist) comparative genomics (comparing DNA sequences between different species) has really sealed the deal on evolution. Even if Darwin had never lived and no one else had come up with the idea of common ancestry, modern genomics would have forced us to that conclusion even if there was no other evidence available (which of course manifestly isn’t the case).</p>

<p>For example, we see the genes for air-based olfaction (smelling) in whales that no longer even have olfactory organs. Humans have the remains of a gene devoted to egg yolk production in our DNA in exactly the place that evolution would predict. Our genome is nearly identical to the chimpanzee genome, a little less identical to the gorilla genome, a little less identical to the orangutan genome, and so on – and this correspondence is present in ways that are not needed for function (such as the location of shared genetic defects, the order of genes on chromosomes, and on and on). If you’re interested in this research, you might find this (again, somewhat technical) <a href="http://www.youtube.com/watch?v=CqsvEwByKU0" target="_blank">lecture</a> I gave a few years ago helpful. You can also see a less technical, but longer version <a href="http://www.youtube.com/watch?v=Of0PjoZY4L0" target="_blank">here</a> where I do my best to explain these lines of evidence to members of my church. For those wanting even more info, a few years ago I recorded <a href="http://www.blog.beyondthefirmament.com/video-presentations/christianity-biology/" target="_blank">a series of lectures</a> given to my non-majors, intro biology class that explored evolution and Christian responses to it in depth.</p>

<p><strong>3.  From Rob:  I have trouble with randomness in natural selection.  Why is it essential in scientific terms that evolutionary development is random?  How does that fit with the notion of a God who is involved in the world? …Random evolution would not be theism (or it wouldn't Biblical Christianity).  It would be deism; the Great Clockmaker who set everything in motion and then kept hands off.  Why is randomness essential scientifically, and how does a Christian accept it theologically?</strong></p>

<p>I think you mean randomness in mutation: natural selection is anything but random (it’s a process whereby certain variants in a population reproduce more successfully than others). Evolution has a random component (mutations arise that may be detrimental, neutral or beneficial) and an emphatically non-random component (the different variants within a population do not all reproduce at the same frequency, meaning that the next generation will not be exactly like the previous one). So, as a whole, evolution is not random since it has a strongly non-random component. Evolution is actually remarkably good at producing similar results over and over again: consider how similar ichthyosaurs (descended from terrestrial reptiles) and dolphins (descended from terrestrial mammals) are. That’s the non-randomness of evolution at work. Some evolutionary creationists have argued that this non-randomness of evolution is a way that God uses evolution to shape His creation (the best work on this topic is <em><a href="http://www.amazon.com/gp/product/0521603250/ref=as_li_ss_tl?ie=UTF8&tag=thebiofou06-20&linkCode=as2&camp=217145&creative=399373&creativeASIN=0521603250">Life's Solution</a><img src="http://www.assoc-amazon.com/e/ir?t=&l=as2&o=1&a=0521603250&camp=217145&creative=399373" width="1" height="1" border="0" alt="" style="border:none !important; margin:0px !important;" /></em> by noted Cambrian paleontologist Simon Conway Morris).</p>

<p><strong>4.  From HMV: I agree with you that the evidence seems to point to evolution being true. I've read Biologos and the old Evolution and Evangelicals blog.  I've read books where people try to rework theology in light of this scientific knowledge.  And yet, I'm left feeling confused and unsatisfied about doctrines like sin, the Fall, salvation, etc.  What about you--have you found a satisfying way to maintain your evangelical theology in light of evolution?</strong></p>

<p>This is a tricky question, because it hinges on the inherently subjective term “satisfying.” What I might find satisfying you might not – and in order to answer the question I have to guess at what you mean by it. </p>

<p>Personally, the concept of Divine accommodation has been helpful to me. This is a theology that has a long heritage in Protestant circles (e.g. Calvin).  In a nutshell, it’s the idea that God, in his grace, brings himself down to the level of the audience he is communicating with. For Genesis, that audience is an ancient near-eastern culture, not our modern scientific one. For Genesis, my view is that God wants to communicate that he is the Creator of all that there is, that he has given humanity a special image-bearing role within it, but our sinfulness has broken that relationship, et cetera – but that he doesn’t see a need to give them a science lesson first. I would recommend Denis Lamoureux’s book <em><a href="http://www.amazon.com/gp/product/1556358865/ref=as_li_ss_tl?ie=UTF8&tag=thebiofou06-20&linkCode=as2&camp=217145&creative=399373&creativeASIN=1556358865">I Love Jesus & I Accept Evolution</a><img src="http://www.assoc-amazon.com/e/ir?t=&l=as2&o=1&a=1556358865&camp=217145&creative=399373" width="1" height="1" border="0" alt="" style="border:none !important; margin:0px !important;" /></em> and, though not directly related to science, Peter Enns’ book <em><a href="http://www.amazon.com/gp/product/0801027306/ref=as_li_ss_tl?ie=UTF8&tag=thebiofou06-20&linkCode=as2&camp=217145&creative=399373&creativeASIN=0801027306">Inspiration and Incarnation</a><img src="http://www.assoc-amazon.com/e/ir?t=&l=as2&o=1&a=0801027306&camp=217145&creative=399373" width="1" height="1" border="0" alt="" style="border:none !important; margin:0px !important;" /></em> may also be helpful to you (it certainly was to me).</p>

<p><strong>5.  From Chris: From the perspective of an evolutionary creationist, what meaning and value do you extract from the creation accounts in Genesis and why would they be important for the Christian faith if they can't be taken literally?</strong></p>

<p>See the answer above – I see the Genesis narratives as God graciously reaching down to an ancient culture in order to communicate to them that he is their creator, that they are alienated from him, and that he desires that they be restored to fellowship through his offer of covenant with him (ultimately pointing to the need for God to step into history himself as the One who can keep the covenant on our behalf).</p>

<p><strong>6.  From Paige:  I'll never forget sitting in one of Dr. Charlie Liebert’s classes several years ago and hearing him ask the question: "What came first, death or sin?" If we believe that there was no death before sin, it causes a wrinkle in our ability to hold to the theory of evolution. As a scientist, this question caused him to reexamine the evidence. How have you personally dealt with this "wrinkle?"</strong></p>

<p>Yes, if you believe that no death of any kind (plant, animal, bacterial) occurred before human sinfulness, then this precludes an evolutionary view, since the fossil record is (obviously) a record of things, well, dying. If you hold that no human death came before sinfulness, then it depends on what you call human (there is a gradation of forms leading up to the modern human skeleton in the fossil record, as well as the overwhelming genetic evidence that we arose through an evolutionary process) and what you consider sin (i.e. when did we become accountable to God for our actions?). There is also the long-standing observation that God decrees that Adam and Eve will surely die the day they eat of the fruit – and then they live for several hundred years after the fact. I’d also recommend reading through Romans 5:12 – 8:17 (which, as you know, is all about Adam, sin and Christ as the second Adam) and making a mental checklist of how Paul uses the term death in this passage. References to physical human death are in the minority – suggesting that Paul’s understanding of what is going on in Genesis has a lot more nuance than a simple literal reading would imply.</p>

<p><strong>7.  From Jane (from her husband, an atheist): All of the questions posted so far approach the topic from the viewpoint of assuming belief in a god.  As an atheist, I don’t share that assumption.  (For those who might not appreciate it, evolution offers a mechanism for understanding the existence of living organisms that doesn’t require the existence of a god.)  If you transitioned from an anti-evolutionary/pro-intelligent design view to an evolutionary creationist view a few years ago,” why didn’t you keep going and just embrace evolution and drop the theistic aspect?</strong></p>

<p>Your question implies that there is a natural trajectory from accepting evolution to rejecting God. As a theist, specifically an evangelical Christian, I don’t agree with this point, though I understand where you are coming from. Let me explain.</p>

<p>Your assumption, that “evolution offers a mechanism for understanding the existence of living organisms that doesn’t require the existence of a god” holds weight only if one has the view that “natural explanations” and “theistic explanations” are a zero-sum game. This is a God-of-the-gaps approach, where God has less and less to do as we understand more and more how nature works (and a view I reject). Logically, if I held this view I would view science as an inherently evil activity, since any natural explanation diminishes the activity of God from this viewpoint. Your view is also one that science cannot establish as correct, since science cannot speak to the absence of divine action in an observed phenomenon.</p>

<p>If, on the other hand, one believes that “natural explanations” reveal the means by which God ordains and sustains his creation, then “natural explanations” are not a threat to theism at all, but rather a window into the ways God acts in the world. This is the view I hold, and it too is a view that science cannot establish. Both theistic evolution and atheistic evolution are philosophical / theological interpretations of what science can establish: evolution.</p>

<p>As for “drop(ping) the theistic aspect” – this would imply that my faith was based on a particular understanding of creation such that I would question my faith when I questioned the mechanism of creation and/or my interpretation of Genesis. This wasn’t really an issue for me, since my faith was, and is, based on believing that Jesus of Nazareth is in fact the resurrected Lord of the entire world (to roughly paraphrase how N.T. Wright puts it) and that the resurrection is God the Father’s vindication of Jesus’ messiahship (as a sinless, suffering servant that, mystery of mysteries, turns out to be God Himself, incarnate). None of that belief was ever predicated on a specific interpretation of Genesis with respect to scientific details, and as such, accepting evolution as a mechanism by which God creates did not alter those beliefs. (If you’d like to see a rational, historically-rooted investigation of the credibility of the resurrection, N.T. Wright’s <em><a href="http://www.amazon.com/gp/product/0800626796/ref=as_li_ss_tl?ie=UTF8&tag=thebiofou06-20&linkCode=as2&camp=217145&creative=399369&creativeASIN=0800626796">The Resurrection of the Son of God</a><img src="http://www.assoc-amazon.com/e/ir?t=&l=as2&o=1&a=0800626796&camp=217145&creative=399369" width="1" height="1" border="0" alt="" style="border:none !important; margin:0px !important;" /></em> is the standard by which others are judged.)</p>]]></content:encoded>
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        <dc:creator>Rachel Held Evans, Venema, Dennis</dc:creator>
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