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        <title>Custom Feed &#45; The BioLogos Forum</title>
    <link>http://biologos.org/resources/find/any/Genetics,ID Movement,Genesis/sort&#45;by&#45;Newest?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
    <description>This is a custom feed of BioLogos resources. Make a new feed at http://biologos.org/resources/find</description>
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    <dc:rights>Copyright 2013</dc:rights>
    <dc:date>2013-05-25T17:59:06-08:00</dc:date>    
    
    

            
            
        
      <item>
        <title>Series: Evolution Basics</title>
        <link>http://biologos.org/blog/series/evolution&#45;basics?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/evolution&#45;basics?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Written by BioLogos Fellow of Biology Dennis Venema, this series of posts is intended as a basic introduction to the science of evolution for non&#45;specialists.</description>
        <content:encoded><![CDATA[<p>Regular readers of the BioLogos Forum will know that over the past few years I have written extensively on various evidences for evolution, often with a focus on genetics evidence. Other posts have focused on scientific arguments put forward from groups such as the Intelligent Design Movement (IDM), or the Old Earth Creationist organization <em>Reasons to Believe</em> (RTB), with a view to showing why I find those arguments unpersuasive. Often these articles are deeply technical—to the point where my friends (perhaps on Facebook, perhaps in a conversation over coffee in the church foyer on Sunday) would comment that, as interesting as it looked, it was just over their heads. Now, these friends are intelligent people, and some are even interested in evolution—but they’re not folks who read extensively on the topic. Nor do they follow the IDM or RTB—they’re just average folks who would like to learn more, but need to start at the beginning and work up slowly – not jump in halfway through, with technical terms and jargon flying around. They need a <em>context</em> for the discussion. They need to explore the basics, &nbsp;first, before building on that understanding to explore the finer details.</p>

<p>So, I’ve decided to try a slightly different approach for the next while—one that has these sorts of folks in mind. From time to time, you can still expect those more in-depth, technical articles, or perhaps a discussion of some new research that makes the popular press, or even an analysis of some new argument from the IDM or RTB. These will be breaks from the new routine, however. For the most part, we’re going to stick to the basics, much like you would if you took an introductory evolution course at a university. Don’t worry, though: this course doesn’t have any prerequisites! All that’s needed is a willingness to learn.</p>

<h3>What you can expect</h3>

<p>The goal of this course is straightforward: to provide evangelical Christians with a step-by-step introduction to the science of evolutionary biology.&nbsp; This will provide benefits beyond just the joy of learning more about God’s wonderful creation. An understanding of the basic science of evolution is of great benefit for reflecting on its theological implications, since this reflection can then be done from a scientifically-informed perspective. From time to time we might comment briefly on some issues of theological interest (and suggest resources for those looking to explore those issues further), but for the most part, we’re going to focus on the science. For folks interested in the interaction between science and Christianity, I heartily recommend <a href="http://biologos.org/blog/science-and-bible">Ted Davis’ recent series</a> as a fabulous introduction to the topic.</p>

<p>You can also expect a slow, patient pace. Since this course is intended for folks with little or no background in biology, we’re going to take our time to make sure no one gets left behind. This might be frustrating to folks who already know a fair bit about evolution. Hopefully even more knowledgeable readers will learn some new and interesting details along the way—but the goal will primarily be to help folks who are less well versed in evolution increase their understanding.</p>

<p>You can also expect a survey of many different areas that have some bearing on evolution. We’ll examine geology, paleontology, biogeography, genetics, and a host of other topics in order to provide a “big picture” overview. This broad-brush approach means that any given individual post will not necessarily be “convincing” to folks who have doubts about evolution. Think about assembling a large jigsaw puzzle: placing any individual piece, on its own, doesn’t convincingly demonstrate what the overall picture will show. This course will be like that. Each topic we cover will put a few pieces in place here and there, slowly building towards the final overall picture.</p>

<p>Since evolution is an active science, this process will also highlight where there are “missing pieces” that are still being sought by scientists. All of this is well and good, since the purpose of this course is not so much to <em>convince</em> anyone of the validity of evolutionary theory, but rather to <em>inform</em> readers about the nature and scope of evolution as a scientific theory in the present day. My goal is to provide readers with a basic understanding of what evolution is and how it works. Given that as the primary goal, if one finds the scope of the evidence ultimately convincing (or not) is somewhat beside the point. The intent here is to provide readers with information they can use to make their own, informed decision.</p>

<h3>How you can help</h3>

<p>First and foremost, you can help by spreading the word about this series to folks you think would be interested in learning more about evolution in a non-threatening environment. Secondly, you can help me by asking questions in the comments. One of the challenges of being a specialist is having the ability to put oneself in the shoes of someone just starting out. What might seem obvious to me may not seem obvious to you, and I hope you’ll feel that no question is too basic or too simplistic. If you’re wondering about something, it’s almost guaranteed that other folks are, too! So, please don’t be shy. I’ll do my best to answer questions in the comments, though I hope that some of our more skilled commenters will (respectfully!) help out here, as well. Finally, you can help by letting me know what broader areas of evolution you find confusing. I have my own ideas about what areas of evolution are commonly misunderstood, but I’d love to hear from readers about what areas they find difficult to understand. I’ll use this input to shape the topics I will cover as we go forward.</p>

<h3>Getting started</h3>

<p>In the next post in this course, we’ll dive into the course content by introducing two key areas: how scientific theories work in general, and how evolution in particular works as the current organizing theory of modern biology.&nbsp;</p>
]]></content:encoded>
        <pubDate>Fri, 17 May 13 07:00:37 -0700</pubDate>
        <dc:creator>Dennis Venema</dc:creator>
        <!--<dc:date>May 17, 2013 07:00</dc:date>-->
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            <item>
        <title>Biological Evolution: What Makes it Good Science? Part 2</title>
        <link>http://biologos.org/blog/biological&#45;evolution&#45;what&#45;makes&#45;it&#45;good&#45;science&#45;part&#45;2?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/biological&#45;evolution&#45;what&#45;makes&#45;it&#45;good&#45;science&#45;part&#45;2?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>The Galápagos Islands were not a distinct “center of creation,” but a workshop for evolution in which an ancestral species made it to the yet uncolonized island and underwent a massive degree of speciation to adapt to the environment of the island. This is precisely what one would expect if the species of islands had arisen by evolution.</description>
        <content:encoded><![CDATA[<p>The second piece of evidence is found in living creatures, which are littered with the remnants of their ancestors’ ways of life.&nbsp; Bird and anteater embryos show tooth buds that are later absorbed and never erupt.&nbsp; Baleen whale embryos even develop teeth that are later resorbed.&nbsp; These are relics of their toothed ancestors.<sup>1</sup> Flightless kiwi birds have diminutive wings underneath their feathers, which testify to the ability of their ancestors to fly.&nbsp; Many cave-dwelling animals have rudimentary eyes that cannot see, even though eye development initiates in many of these species, but is later aborted.<sup>2</sup>&nbsp; The same can be said for the hind limbs of snakes, which form limb buds during embryonic development, but die off later.<sup>3</sup> All these are indications that they are descended from sighted and limbed ancestors, respectively.&nbsp;</p>

<p>Such remnants are also found in our genomes.&nbsp; Humans, unlike most mammals, cannot synthesize (make) our own vitamin C, but we carry the genes for synthesizing vitamin C.&nbsp; One of these genes encodes the GLO (L-gulonolactone oxidase) enzyme, and this gene in humans contains inactivating mutations and is therefore a “pseudogene.”&nbsp; This pseudogene and the genes that encode the enzymes of the vitamin C biosynthetic pathway are the remnants of our own evolutionary lineage from an ancestor that was able to synthesize its own vitamin C.<sup>4</sup> Furthermore, the GLO pseudogene is just one of a graveyard of inactivated genes, transposons, retroviruses and other non-functional sequences that litter our genome.&nbsp; While some of these sequences have been co-opted for particular functions, many of them have no known function.<sup>5</sup> We share many of these non-functional sequences with chimpanzees. &nbsp;The very presence of these genomic and anatomical flotsam and jetsam only makes sense if evolution has occurred.<sup>6</sup></p>

<p>A third piece of evidence for evolution comes from biogeography.<sup>7</sup> The flora and fauna of islands such as those of the Galápagos and Hawaii are radically unbalanced in that they lack many types of plants and animals but contain a profusion of clusters of similar species.&nbsp; Hawaii, for example, has no native mammals, reptiles, or amphibians, but a profusion of fruit flies and silversword plants.<sup>8</sup> One third of the 2,000 species of fruit flies are found on the Hawaiian Islands, which only covers 2 percent of the land on earth. &nbsp;These islands were never connected to the continents and arose as a result of volcanic activity and were, at least initially, completely uncolonized.&nbsp; The colonization of these islands occurred by means of occasional introduction of creatures from the mainland that then rapidly speciated on these islands to fill every available ecological niche.&nbsp; Thus, the organisms most closely related to island species come from the closest mainland areas, and often include those creatures most likely to find their way to islands, such as birds and flying insects.&nbsp;</p>

<p>The Galápagos Islands provide an excellent example of how biogeography provides evidence for evolution. The Galápagos have fourteen species of finch whose closest relative is probably the South American grassquit (<em>Tiaris</em>), yet only four of these finch species feed on seeds as finches normally do, while two others feed on cacti, seven eat insects, and another eats almost exclusively leaves.<sup>9</sup> Darwin, while visiting the Galápagos, still thought that species only varied within a particular kind (though he would not have used that terminology) but could adapt to various local environments and become particular subspecies. Therefore, he originally listed the warbler finch (<em>Certhidea olivacea</em>) as a wren and listed the small cactus finch (<em>Geospiza scandens</em>) as a member of the Icteridae or the family of meadowlarks and orioles.&nbsp; Only after Darwin had deposited his Galápagos specimens with the British ornithologist John Gould did Darwin discover (in a meeting with Gould that occurred during March, 1877), that his finch collection included thirteen or fourteen species of unusual finches that were all so closely related, Gould classified them in a single group all their own.&nbsp; This meeting showed Darwin that the immutable barrier between kinds of species did not exist.&nbsp; The Galápagos Islands were not a distinct “center of creation,” but a workshop for evolution in which an ancestral species made it to the yet uncolonized island and underwent a massive degree of speciation to adapt to the environment of the island.<sup>10</sup> This is precisely what one would expect if the species of islands had arisen by evolution.&nbsp;</p>

<p>A scientific theory also allows scientists to make predictions, and good theories provide accurate predictions.&nbsp; Can the theory of evolution allow accurate predictions?&nbsp; The answer, once again, is yes.&nbsp; Darwin himself predicted that the earth must be very old for evolution to occur.&nbsp; He did not know the age of the earth, but further research has shown that the earth is 4.55 billion years old, which is plenty of time for evolution to occur.&nbsp; Darwin also predicted that since plants on islands were most closely related to certain mainland plant species, the seeds of these plants should be able to withstand immersion in sea water for long periods of time, and again, Darwin was shown to be right.<sup>11</sup> Many decades after Darwin, we now know that variation in organisms is due to mutations in DNA and that these mutations are inherited, just as Darwin predicted.<sup>12</sup> Also, Darwin’s principle of natural selection predicts that particular sequences of DNA should behave in a manner that benefits only themselves and not their carriers, which modern research has thoroughly confirmed with the discovery of transposons and other types of “selfish DNA.”<sup>13</sup></p>

<p>Is evolutionary theory a good scientific theory?&nbsp; It has been repeatedly tested for over 150 years since its inception, and it has passed those tests successfully.&nbsp; The theory has been modified in response to new data, but the outlines of the theory have remained largely intact.&nbsp; It has existed at risk from new data.&nbsp; During the molecular biology revolution that began with the discovery of the structure of DNA by Franklin, Watson and Crick in 1953, the explosion of new data could have shown contemporary evolutionary theory to be wrong.&nbsp; However, some of the most powerful evidence for the theory of evolution has come from a field of science that did not even exist during Darwin’s time.&nbsp; The ability of a theory to withstand such intense scrutiny is a clear sign it is robust and enduring.&nbsp; As shown, the theory of evolution has predictive power, and it also integrates and makes sense of data from several fields of science, including ecology, paleontology, genetics, historical geology, paleoclimatology, and comparative anatomy and biochemistry.&nbsp; The highly integrative nature of evolutionary theory makes it a fine theory by any measure.&nbsp;</p>

<p>In conclusion, when measured against the standards of a good scientific theory, modern evolutionary biology clearly qualifies as good science.&nbsp; Ongoing debates within evolutionary biology exist about mechanism, rates, and causes, but not over whether evolution occurred.&nbsp; Such a question has been largely settled by the last 150 years’ worth of research.&nbsp; The future certainly looks bright for this field of science and I cannot imagine a more exciting topic to study.&nbsp;</p>

<h3>Notes</h3>

<p>1.&nbsp;Davit-Béal, Tiphaine,Abigail S. Tucker, and Jean-Yves Sire. “Loss of Teeth and Enamel in Tetrapods: Fossil Record, Genetic Data and Morphological Adaptations.” <em>Journal of Anatomy</em> 214, no. 4 (2009): 477–501.&nbsp;</p>

<p>2.&nbsp;Tian, Natasha M. M.-L., and David J. Price. “Why Cavefish are Blind.” <em>BioEssays</em> 27 (2005): 235–38; Yamamoto Y, Stock DW, and Jeffery WR (2004) Hedgehog Signalling Controls Eye Degeneration in Blind Cavefish. <em>Nature</em> 431:844–7; Jeffery, W. R. “Adaptive Evolution of Eye Degeneration in the Mexican Blind Cavefish.” <em>Journal of Heredity</em> 96, no. 3 (2005): 185–196.&nbsp;</p>

<p>3.&nbsp;Bejder, L., and B. K. Hall. “Limbs in Whales and Limblessness in Other Vertebrates: Mechanisms of Evolutionary and Developmental Transformation and Loss.” <em>Evolution and Development</em> 4, no. 6 (2002): 445–58.&nbsp;</p>

<p>4.&nbsp;Lachapelle, M. Y., and G. Drouin. “Inactivation Dates of the Human and Guinea Pig Vitamin C Genes.” <em>Genetica</em> 139, no. 2 (2011): 199–207.</p>

<p>5.&nbsp;Avise, John C. <em>Inside the Human Genome: A Case for Non-Intelligent Design</em>. New York: Oxford University Press, 2010.&nbsp;&nbsp; Romano, C. M., F. L. Melo, M. A. Corsini, E. C. Homes, and P. M. Zanotto.&nbsp; “Demographic Histories of ERV-K in Humans, Chimpanzees and Rhesus Monkeys.”<em> PLoS One</em> 2, no. 10 (2007): e1026. <a href="http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0001026">http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0001026</a>.&nbsp;</p>

<p>6.&nbsp;Max, “Plagiarized Errors and Molecular Genetics,” <a href="http://www.talkorigins.org/faqs/molgen">http://www.talkorigins.org/faqs/molgen</a>.</p>

<p>7.&nbsp;Coyne, Jerry A. “Intelligent Design: The Faith that Dare Not Peak Its Name.” In <em>Intelligent Thought: Science Versus the Intelligent Design Movement</em>, edited by John Brockman, 3–23. New York: Vintage, 2006.&nbsp;</p>

<p>8.&nbsp;Kricher, John. <em>Galápagos: A Natural History</em>. Princeton, NJ:&nbsp; Princeton University Press, 2006.&nbsp;</p>

<p>9.&nbsp;Grant, Peter R., and Rosemary B. Grant. <em>How and Why Species Multiply: The Radiation of Darwin’s Finches</em>. Princeton, NJ: Princeton University Press, 2011.&nbsp;</p>

<p>10.&nbsp;Sulloway, Frank J. “Why Darwin Rejected Intelligent Design.” In <em>Intelligent Thought: Science Versus the Intelligent Design Movement</em>, edited by John Brockman, 107–25. New York: Vintage, 2006.&nbsp;</p>

<p>11.&nbsp;Darwin, Charles.&nbsp;“On the action of sea-water on the germination of seeds.” <em>Journal of Proceedings of the Linnean Society of London</em> (Botany). 1 (1857): 130–140.</p>

<p>12.&nbsp;Futuyma, Douglas J. <em>Evolution</em>. 3rd ed. Sundbury, MA: Sinauer Associates, 2013.&nbsp;</p>

<p>13.&nbsp;Dawkins, Richard. <em>The Selfish Gene</em>. New York: Oxford University Press, 2006.</p>
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        <pubDate>Tue, 16 Apr 13 08:00:46 -0700</pubDate>
        <dc:creator>Michael Buratovich</dc:creator>
        <!--<dc:date>Apr 16, 2013 08:00</dc:date>-->
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            <item>
        <title>Comparing Interpretations of Genesis 1</title>
        <link>http://biologos.org/blog/comparing&#45;interpretations&#45;of&#45;genesis&#45;1?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/comparing&#45;interpretations&#45;of&#45;genesis&#45;1?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>For concordists, the temptation is to interpret every Bible verse to match the current scientific picture.  For non&#45;concordists, the temptation is to interpret every Bible verse that appears to disagree with science as figurative.</description>
        <content:encoded><![CDATA[<h3>Summary of Several Interpretations of Genesis 1</h3>

<p>In <em>concordist</em> interpretations, God made the earth using the sequence of events described in Genesis 1. In <em>non-concordist</em> interpretations, God created the earth using a different timing and order of events than those described Genesis 1.</p>

<table>
	<tbody>
		<tr>
			<th style="border: 1px solid black; text-align:center;" width="50%">Concordist Interpretations:</th>
			<th style="border: 1px solid black; text-align:center;" width="50%">Non-concordist Interpretations:</th>
		</tr>
		<tr>
			<td style="border: 1px solid black; padding: 5px 5px 5px 5px;"><strong>Young Earth Interpretation</strong><br />
			Creation occurred about 6,000 years ago, during six 24-hour days, in the order described. A scientific study of the earth should confirm this.</td>
			<td style="border: 1px solid black; padding: 5px 5px 5px 5px;"><strong>Proclamation Day Interpretation</strong><br />
			The days of Genesis 1 took place in God’s throne room, wherein God proclaimed each step of creation. The throne-room days are not related to days or time periods on earth.</td>
		</tr>
		<tr>
			<td style="border: 1px solid black; padding: 5px 5px 5px 5px;"><strong>Gap Interpretation</strong><br />
			Earth was created long ago (Gen 1:1), became “formless and empty” (Gen 1:2), and was restored about 6,000 years ago during six 24-hour days.</td>
			<td style="border: 1px solid black; padding: 5px 5px 5px 5px;"><strong>Creation Poem Interpretation</strong><br />
			The number and ordering of the “days” of Genesis 1 are chosen for poetic and thematic reasons rather than historical reasons.</td>
		</tr>
		<tr>
			<td style="border: 1px solid black; padding: 5px 5px 5px 5px;"><strong>Day-Age Interpretation</strong><br />
			Creation occurred over billions of years. Each “day” of Genesis 1 corresponds to a long epoch. Events occurred in the order given in the text, but stretched out over a longer time period.</td>
			<td style="border: 1px solid black; padding: 5px 5px 5px 5px;"><strong>Kingdom and Temple Interpretations</strong><br />
			As the great King, God gives humans dominion as in a “land grant” covenant. Alternatively, God inaugurates the cosmos as his temple. In both cases, the text is not focused on the physical universe.</td>
		</tr>
		<tr>
			<td style="border: 1px solid black; padding: 5px 5px 5px 5px;"><strong>Appearance of Age Interpretation</strong><br />
			Creation occurred about 6,000 years ago during six 24-hour days, but it was created to look like it had a long history of billions of years.</td>
			<td style="border: 1px solid black; padding: 5px 5px 5px 5px;"><strong>Ancient Near Eastern Cosmology Interpretation</strong><br />
			Genesis 1 matches the physical picture of the world believed in Ancient Near East religions, but presents a dramatically different theological picture, proclaiming one God as creator of all rather than many gods.</td>
		</tr>
	</tbody>
</table>

<p>How should Christians go about choosing among all of these interpretations? Such a decision should be based on consistent principles and prayerful reflection, not just on “what sounds good.” Here are our own conclusions.</p>

<h3>Weaknesses in Concordist and Non-Concordist Interpretations</h3>

<p>Both concordist and non-concordist interpretations of Genesis 1 arise from good motives, a desire to show that the Bible does not conflict with nature’s testimony. &nbsp;But both types of interpretations have their pitfalls.</p>

<p>For concordists, the temptation is to interpret every Bible verse to match the current scientific picture. The meanings of particular phrases can be bent out of shape to match a particular scientific finding. For example, Hebrew words that literally meant <em>birds</em> or <em>plants</em> to the original audience are redefined to meet some modern scientific category such as insects or single-celled organisms, just to make the order of events line up. By focusing on trying to match the details of the ancient text to twenty-first century knowledge, the concordist may miss meanings in the passage that were clear in the original cultural context, including important spiritual insights. Moreover, concordists can be forced to regularly change and update their interpretations as modern scientific knowledge grows and changes. For instance, the Gap Interpretation twisted the meaning of Genesis 1:2 outside its original intent; later it failed to match new scientific evidence.</p>

<p>For non-concordists the temptation is to interpret every Bible verse that appears to disagree with science as figurative without first studying the text. By interpreting a text that was intended tobe understood literally as metaphoric, they may bend the meanings of particular phrases to refer to purely spiritual ideas and ignore the historical meanings they had in the original cultural context. At one extreme non-concordists can apply the same strategy to all Bible passages and even interpret Jesus’ miracles and resurrection as spiritual symbols simply because they think that miracles are scientifically impossible.</p>

<p>For both concordists and non-concordists the temptation is to let science drive the interpretation of Scripture more than it should. When an apparent conflict arises between science and a biblical text, it can and should motivate us to consider a biblical passage more closely. The scientifically discerned testimony from God’s book of nature can even be a useful tool for deciding between two or more biblical interpretations that are otherwise equally valid. But the interpretations themselves are not <em>determined</em> by science; they must be driven by theological considerationsand be consistent with the rest of Scripture.</p>

<p>To avoid these risks we need to look at what the best biblical scholarship has to say about the passage rather than at how it fitswith science. Finally, we must take care that the desire to resolve conflicts does not distract us from the main message God has forus in the text. Our primary calling as Christians is to live our lives according to the clear messages of God’s Word; it is a lesser calling to debate the subtleties of interpretation of less clear passages.</p>

<h3>Genesis 1 in Its Original Context</h3>

<p>To choose among the various interpretations, we recommend using a consistent approach based on the principles of biblical interpretation discussed in chapter 4.&nbsp; The first principle, that each passage should be interpreted in light of the rest of the Bible, provides some guidance. For instance, the Bible’s teaching on God’s truthfulness and his glory displayed in creation might lead us away from the Appearance of Age Interpretation.&nbsp; The differences between the Genesis 1 and Genesis 2 accounts might point toward a non-concordist interpretation.</p>

<p>The second principle of interpretation gives more direction. It reminds us <em>first</em> to work out what the passage meant in its original literary, cultural, and historical context, and <em>then</em> figure out what meaning it has for us today. How do the various interpretations fit this principle? Of the four <em>concordist</em> interpretations discussed in chapter 5, the Young Earth Interpretation seems to come closest to what ancient peoples would have heard in the text. The Gap and Day-Age concordist views would have baffled the original audience, since these ancients would have had no concept of geological ages; if they could not fathom time periods of millions or billions of years, the text must have meant something different to them.</p>

<p>Of the four <em>non-concordist</em> interpretations of Genesis discussed in this chapter, the Proclamation Day Interpretation, while it has some basis in the text, seems least likely to be the meaning heard by the original audience. The proclamations are implemented as soon as God says them, and there is no reference to a different timing or sequence of events in terrestrial time. In our view a combination of the Ancient Near East Cosmology, Kingdom and Covenant, and Creation Poem Interpretations come closest to what the original audience would have heard. The differences between the Genesis text and the pagan stories highlight the sovereignty of God and the goodness of creation. The elegant poetic structure and inspired phrases reinforce the theological messages of the Kingdom and Temple interpretations.</p>

<h3>Genesis 1 for Modern Readers</h3>

<p>With a better understanding of what the original audience heard,we have insight into God’s message for them and thus for us. <em>If God’s purposes in Genesis 1 did not include teaching scientific facts to the Israelites, then we should not look here for scientific information about the age or development of the world.</em> For modern readers, as for the original audience, the message of Genesis 1 is its powerful theological truths. God does not use theBible to teach us the physical processes he uses to make the rainfall or the earth orbit the sun or to form the mountains. Instead, in a beautifully crafted and impressively short text, God teaches us all about</p>

<ul>
<li>his sovereignty.</li>
<li>the goodness of creation.</li>
<li>the honored status of humankind as his image bearers.</li>
</ul>

<p>God has given us a text that speaks of the physical world in simple terms, based on how it appears, in order that all peoplemight understand it. &nbsp;The common language of this text has made it accessible to people of many times and cultures, aiding the communication ofthe gospel around the world.</p>

<p>Does a non-concordist interpretation of Genesis 1 mean that we have sacrificed a literal understanding of the gospel? No. TheGospels were surely heard by their first audience as historical eyewitness accounts by the disciples, and everything about the emphasis and tone in those books indicates that Jesus’ resurrection and miracles are essential events in the story. That is how we should read the Gospel stories still today. In Genesis 1, on theother hand, the first listeners heard nothing new about the physical universe; all the emphasis was on <em>who</em> created the world and humanity and <em>why</em> they were created.</p>

<p>What does this mean for science? It means that Genesis 1 is not a science textbook. The text was never intended to teach scientificinformation about the structure, age, or natural history of the world. Thus, comparing Genesis 1 to modern science is likecomparing apples to oranges. Or perhaps more accurately, comparing Genesis 1 to modern science is like comparing Psalm 93:1 (“The world is firmly established; it cannot be moved”) to modern astronomy. Genesis is neither in agreement nor in conflict with the sequence of events found by astronomy and geology.</p>

<p>As scientific knowledge increases and changes over the centuries, its understanding of the physical structure and historyof the earth will change. But through all of those centuries the theological truths of Genesis 1 remain the same: there is one sovereign God who makes light from darkness, creates an ordered world from chaos, and fills an empty world with good creatures. Humans need not fear the capricious whims of a pantheon ofgods but can instead trust in the one true God who made us in his image and declares us “very good.”</p>

<p class="intro">For more discussion of Biblical interpretation, see chapters 4, 5, and 6 of&nbsp;<em>Origins</em>. Next week, we'll look at an excerpt on astronomy and the age of the universe.</p>

<p><strong>Excerpt from Chapters 5 and 6 of&nbsp;<em>Origins: Christian Perspectives on Creation, Evolution, and Intelligent Design</em>&nbsp;(Grand Rapids, MI: Faith Alive Christian Resources), 2011. Reprinted with permission. To order purchase a copy of the book or e-book, please call 1-800-333-8300&nbsp;or visit our website&nbsp;<a href="http://www.faithaliveresources.org">www.faithaliveresources.org</a>.</strong></p>

<p><strong>Want a free copy of&nbsp;<em>Origins</em>?&nbsp; For a limited time,&nbsp;<a href="/donate/origins">donations of $50 or more will receive a &nbsp;copy of the book!</a>&nbsp;Plus, from now through April, your gift will be doubled thanks to a matching grant from a generous donor. You can learn more&nbsp;<a href="/donate">here</a>.</strong></p>
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        <pubDate>Fri, 12 Apr 13 08:00:15 -0700</pubDate>
        <dc:creator>Deborah Haarsma, Haarsma, Loren</dc:creator>
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        <title>Meet Jimmy Lin, “Medical and Scientific Doxologist”</title>
        <link>http://biologos.org/blog/meet&#45;jimmy&#45;lin&#45;medical&#45;and&#45;scientific&#45;doxologist?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/meet&#45;jimmy&#45;lin&#45;medical&#45;and&#45;scientific&#45;doxologist?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In our current culture, we’re defined by our jobs. It’s having a vocation. I wanted to shift away from that. I didn’t want to be a doctor first and foremost, or a scientist, but one who praises God.</description>
        <content:encoded><![CDATA[<p><strong>EMILY RUPPEL: You had a lot on your plate when you spoke with Michael Hickerson in 2012. What are you up to now?</strong></p>

<p><strong>JIMMY LIN</strong>: Currently I’m on faculty at Washington University at St. Louis, where I am a research instructor in the pathology department. Also, a year and a half ago, I founded the <a href="http://www.raregenomics.org/">Rare Genomics Institute</a> (RGI)—a nonprofit that helps find cures for people with rare diseases.</p>

<p><strong>ER: What qualifies as a “rare disease”?</strong></p>

<p><strong>JL:</strong> These are diseases like cystic fibrosis and Huntingdon’s disease—diseases that affect less than 200,000 Americans each year. There are over 7000 different rare diseases, and less than 5% of them have any therapy. Altogether, they affect about 25-30 million people.</p>

<p>This creates what we call a “long tail problem”—it’s hard for a top-down research system to create research programs for all 7000 rare diseases. So instead, we are creating a bottom-up platform from which the patients themselves can create research projects and help fund them. We connect patients with physicians and researchers, customize a research program with top medical universities, design the experiment, and then use an online fundraising platform to fund the study through [mostly] friends and family of the patient.</p>

<p>Basically, we create a “foundation in a box.” By partnering with the Rare Genomics Institute, patients and their friends and families who want to study rare diseases don’t have to go through the hoops of creating their own nonprofit or lab—we do that for them. So, instead of creating 7000 different nonprofits, we create a generalized platform from which studies can be conducted.</p>

<p><strong>ER: Who qualifies for care through the Rare Genomics Institute?</strong></p>

<p><strong>JL:</strong> Anyone with a rare disease can come to us. The main thing we’re doing right now is diagnosis. When families come to us, they either don’t know the disease that’s affecting them or their child, or they don’t know the gene that’s wrong.</p>

<p>For instance, if a child had a condition that doctors couldn’t identify, his or her parents might come to us for help. What we’d do then is sequence the genes of the mother, father, and child, and compare them to reference genome to determine what mutations each of the parents have. Depending on what the disease is and what the gene causing it is, we can filter out mutations that don’t mean anything using the parents’ genomes—then, after filtering, we can potentially pinpoint the genes that fit the genetic pattern of the disease. This is the first step.</p>

<p>After that, we are building infrastructure to determine the effect of these changes and a way to help. For example, after looking at the literature, we can perhaps design experiments using cells extracted from the patient; this part of the process is different for every disease. Then, if we can determine that there is, for instance, a pathway missing a specific enzyme, we can try using drugs, a bone marrow transplant, or gene therapy to try to put healthy cells into the child… But there’s a variety of diseases, of course, so there’s a variety of different approaches—and we’re just starting to explore these aspects.</p>

<p><strong>ER: How did RGI get started?</strong></p>

<p><strong>JL:</strong> It really started when I was in medical school at Johns Hopkins—there was this boy that came to our clinic to be seen. My research was in cancer genome sequencing, and the family had come to our department looking for answers about what was wrong with their son. At that point, the family was almost hopeless—they had gone to so many doctors, run so many tests—I decided I wanted to try to help children like this. That’s when my friends and I decided to start the Rare Genomics Institute.</p>

<p>Currently, there are about 50 researchers associated with the organization, and we are all volunteers. It’s growing much, much faster and been more amazing than we’ve ever imagined—we’re already making an impact. In May of last year, we were able to discover a new disease using the world’s first crowd-sourced, crowd-funded genome. Working with researchers at Yale, we delineated a disease of which our patient was the first identified.</p>

<p>Right now, we’re in the middle of raising funding and hiring staff to make this organization one that is self-sustaining, and to increase its impact even more.</p>

<h3>Excerpts from Michael Hickerson Interview</h3>

<p><strong>MH: …you call yourself a doxologist. What’s the full term you used in your Jubilee bio?</strong></p>

<p><strong>JL</strong>: Medical and scientific doxologist.</p>

<p><strong>MH: How did you decide on that term and what does it mean to you?</strong></p>

<p><strong>JL:</strong> I listen to a bunch of teaching by <a href="http://en.wikipedia.org/wiki/J._I._Packer">J.I. Packer</a>&nbsp;, who teaches theology at Regent College and is one of the leading thinkers on these things. Interestingly, before any one of his classes, he says “Theology is for doxology,” and then the whole class sings the Doxology together out loud in class. I thought, “Wow, that is so great,” because everybody sometimes learns theology just for intellectual things [instead of for worship].</p>

<p>That’s not just true for theology, it’s for everything: biology is for doxology; chemistry is for doxology. That’s when I started to think, I should consider myself, first and foremost, as a person who praises God in what I do. And then no longer make “Christian” the adjective, right? “Doxologist” is the noun. But then what kind of doxologist am I? So I call myself a medical and scientist doxologist. I would call someone, for example, in the marketplace, a business doxologist. Or, someone who does art, an artistic doxologist. To really have the noun as our identity, and then our vocation as just a descriptor of how we do that.</p>

<p><strong>MH: That’s a great point. A noun is always stronger than the adjective. So, you want that to be the focus, rather than the add-on.</strong></p>

<p><strong>JL:</strong> In our current culture, we’re defined by our jobs. It’s <em>having</em> a vocation. I wanted to shift away from that. I didn’t want to be a doctor first and foremost, or a scientist, but one who praises God. And evidently, within science you don’t want to call yourself a Christian Scientist. That’s another religion, so . . .</p>

<p><strong>MH: [laughs] That’s right. I run into that, as well, when I’m teaching or talking about science to Christians. You always run into that stumbling block.</strong></p>

<p><strong>JL: </strong>With “scientific doxologist,” people don’t confuse them. You do have to explain what it means. And that gets in a little story actually, on what it means about vocation. It’s a small lesson — a teaching point when you do talk to people about vocation and calling. That’s why I use it.</p>

<p><strong>MH: I guess my final question would be what spiritual practices help sustain you? What helps you stay in contact with God and keep a good foundation?</strong></p>

<p><strong>JL:</strong> First, I am interested in many, many different things. I sort of mix it up in terms of spiritual practices. Besides the fundamentals, of course, of quiet time, devotional reading, and scriptural reading, I do theological study because I have to do that academically. I find a lot of time with God through the spiritual disciplines, such as times of solitude — which is very interesting for someone who is in academics to no longer think about ideas but just to be quiet before God — how silence, time to think by yourself, or sitting in silence is also something you should foster.</p>

<p>In terms of spiritual formation, what you really need is definitely a good community of people. I have a very supportive community at my church. I’m the deacon of devotions, so that of course keeps me on track. It encourages me as I, in my own spiritual walk, encourage other people. Fundamentally, I think for all Christians, whether you are academic or no matter your vocation or calling, being in the Word and prayer are the most important things. Doing that and being spiritually fed is what is important.</p>
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        <pubDate>Mon, 25 Mar 13 08:33:45 -0700</pubDate>
        <dc:creator>Jimmy Lin, Ruppel, Emily</dc:creator>
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        <title>Genes, Cells, and the Changing Face of Technology, Part 1</title>
        <link>http://biologos.org/blog/genes&#45;bacteria&#45;and&#45;the&#45;changing&#45;face&#45;of&#45;technology&#45;part&#45;1?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/genes&#45;bacteria&#45;and&#45;the&#45;changing&#45;face&#45;of&#45;technology&#45;part&#45;1?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Right on this tabletop, you could make materials that by current manufacturing processes would otherwise cause a great amount of environmental hazard … In 50 years, we should be able to do things in ways we don’t do them now, that will be cheaper, less toxic, less polluting, more efficient, and so forth…</description>
        <content:encoded><![CDATA[<p><strong>EMILY RUPPEL: You’ve said that as technology in the 20th century was influenced by chemistry and physics, in the 21st century, it’s going to be influenced by biology. Can you give us a sense of what that future might look like?</strong></p>

<p><strong>DOUG LAUFFENBURGER</strong>: It could look like a lot of things. One way to envision what I mean is to put yourself back a hundred years. For instance, in 1913, an electronic computer was unimaginable. But using physics, quantum physics, leading to semiconductors and devices like that, people figured out over the next 20 to 30 years how you could build a machine to do calculations and so forth. And then, of course, all sorts of thing happened…</p>

<p>We’re roughly at that stage with biology, even though it seems like things are more imaginable because—and we don’t have to go strictly century by century here—because we can already guess the way some things might change, whereas in 1913 there was no inkling, really, as to what would happen in the computer revolution.</p>

<p>So, to enumerate some of the things that are conceivable—let’s just start with computers, because we were just there.</p>

<p>There’s a notion that computers get faster and cheaper by making their logic gates smaller, and how you improve a design with physics keeps bumping up against how you make these little units smaller. Well, using biology, the solution seems self-evident—you just line up the pieces of DNA, and if you put the right pieces of DNA in the right places, the resulting parts are so much smaller than the things we can do with physics. You can imagine, even though it’s just a theory now, computers continuing to become many times smaller and cheaper—and be made via environmentally benign manufacturing processes—through biomolecular construction.</p>

<p>Now that’s exciting from one point of view, but from another, it’s not that revolutionary, because you’re just using DNA as a piece of physics. It’s not really biology—it’s merely a biological molecule being used to make better physics.</p>

<p>For a different example, if you think about the way we make things, the way we manufacture plastics, gasoline, energy—we have to do all that using chemistry, and to make that chemistry happen, we have to input a lot of energy—in fact, one of the most costly industries in terms of energy usage <em>is</em> the energy industry. You have to put in so much energy to refine petroleum and things like that. And to make plastics, ceramics—things of that nature—is also very energy intensive, and it’s also where a lot of pollution comes from, because you’re mixing together all these chemicals that really didn’t want to be mixed together. You get what you want, but you get a lot of byproducts, toxins, etc.</p>

<p>Well, people have started to realize that a lot of this work can be redone through the use of biology. You can turn corn into fuel or plastic, and you can make magnetic or electrical storage devices out of biological units (viruses can pattern the crystals, so instead of using mixtures of toxic chemicals, you just pull the viruses with the right properties together). Right on this tabletop, you could make materials that by current manufacturing processes would otherwise cause a great amount of environmental hazard.</p>

<p>As for another exciting development—well, to preface, one of the problematic things about modern agriculture is the necessity of using fertilizers (there are insecticides to be concerned about, too), but fertilizer manufacturing is terrible for the environment. You have to make fertilizer out of ammonia and that’s a horribly polluting and energy-intensive manufacturing process. What you could potentially do, instead, is program into bacteria the genes that take nitrogen out of air, turning it into organic nitrogen then just scatter the bacteria onto the field—and you wouldn’t need to <em>make</em> ammonium using the current very caustic processes.</p>

<p>These are the sorts of things I mean—and we haven’t even touched on medicine, yet. People tend to think about medicinal advances, first, but before you even get to medicine, you can think about energy, manufacturing, materials, and agriculture. In 50 years, we should be able to do things in ways we don’t do them now, that will be cheaper, less toxic, less polluting, more efficient, and so forth.</p>

<p><strong>ER: A lot of people are nervous about the idea of “programming” life. Can you respond to this fear as a Christian?</strong></p>

<p><strong>DL</strong>: As a Christian, I would say that God gave humankind dominion over the earth, to do good things—he gave us minds, a passion for understanding how things work, and then he put in this world all these fascinating processes, which, if we figured them out, we could do good things, could feed more people—could feed more people without causing extensive damage to the environment. And cure disease and injury. And the list goes on. I think all that is good, and that God would be pleased that we would be using His creation to live better—I’m not saying more luxuriously, but more happily, contentedly, with each other.</p>

<p><strong>ER: But back to the topic—advances using biology in the next century. You had just mentioned medicine…</strong></p>

<p><strong>DL</strong>: So, yes, there’s also medicine. Now, obviously, in thinking about this, the use of stem cells comes to immediately the fore. There are a lot of diseases out there that you really <em>do</em> need to correct using cellular processes. Right now, we try to make these corrections through chemistry. For instance, we give you a pill, and that pill should interfere with something that’s going wrong in your body—and yet it’s really never adequate to just <em>interfere</em> with something that goes wrong in the body, because you don’t really set it right just by getting in the way of it.</p>

<p>The opportunity with stem cells is that you can say, “I’ll replace the cells in the body that are doing something wrong with cells that are actually doing it right again.” If you program cells to be neurons, heart cells, or bone cells, you can <em>regenerate</em> properly functioning physiology. Rather than, say, replacing a hip with a metal part, you could regenerate the bone, itself, or you could regenerate neurons in Alzheimer’s patients. Never in the past has medicine been able to regenerate a proper physiology; it’s only tried to replace it with an inadequate surrogate, or minimize how much damage a disease is doing. With the use of stem cells, you can actually imagine returning the body to its proper physiology.</p>

<p>A different use of stem cells is to generate human tissue in the laboratory for better studies of human physiology and pathology and improved testing of drug effectiveness and toxicity.&nbsp; This will be a major advance over animal models, because of the significant disparities between animal physiology and human physiology.</p>

<p>A key point to emphasize is that there are different kinds of stem cells, which involve big differences in potential concerns. For Christians, clearly, stem cells derived from embryos present a tremendous ethical issue. Fortunately, a good proportion of stem cell technologies can be pursued using stem cells from adult tissue. These cells can be stimulated to develop into certain tissue-specific physiological behavior, or can now even be “re-programmed” to become quite similar to the more broadly flexible stem cells derived from embryos but now not requiring the embryonic source. Happily, the days of reliance on embryo-derived stem cells appear to be over for purposes of beneficial technologies.</p>

<p>We also should consider genomic medicine, and what’s attractive about that field is that with the way we do medicine now, which is chemistry-based—say you have a disease, and we might give you a pill to correct it—well, the biggest problem with that is that while I think this pill will help ameliorate your condition, maybe it won’t. Maybe that drug only works in ten percent of the patients and not ninety percent.</p>

<p>For example, consider cancer. You’ve got a particular kind of cancer, and we prescribe a certain treatment… well, <em>hopefully</em> you’re among the lucky ten percent, and you’ll be in much better shape in two or three years. If you’re not, then we’ve wasted your time. In fact, we’ve probably hurt you rather than helped you, because we’re using chemistry to interfere with things, and even though we might be reducing the damage of some things, we’re probably causing toxicity elsewhere in the system, because that same chemistry is also interfering over there.</p>

<p>So the value of genomic medicine is to get enough information about you through sequencing your genome that we can say, “Ah, for you this particular pill is not a good idea; it will actually do more damage than good. But for your brother, it’s likely to work, and the ratio of benefit to harm is much better.” This is the reason genomic medicine is more imminent—it’s what’s closest on the horizon to being realized—because we can use the same drugs we have now, we’ll just be using them more effectively. At the moment, we can sequence genomes, and we do have these treatments that help, and it’s just a matter of matching up these two technologies.</p>

<p>Now, on the other hand, when you think about genome sequencing, you can find out all sorts of things, and you have to decide, “What if I learn something negative?”</p>

<p><strong>EDITOR’S NOTE</strong>: Join us next week as we continue the conversation about genomic medicine, bioengineering, and being a Christian in science.</p>
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        <pubDate>Tue, 12 Mar 13 08:00:34 -0700</pubDate>
        <dc:creator>Doug Lauffenburger, Ruppel, Emily</dc:creator>
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        <title>Denis Alexander on Understanding Creation Theology</title>
        <link>http://biologos.org/blog/denis&#45;alexander&#45;on&#45;the&#45;barriers&#45;to&#45;traditional&#45;creation&#45;theology?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/denis&#45;alexander&#45;on&#45;the&#45;barriers&#45;to&#45;traditional&#45;creation&#45;theology?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In this video Conversation, Denis Alexander asserts that contemporary Christians are not taking the early chapters of Genesis seriously enough.</description>
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<p>In this video Conversation, Denis Alexander addresses two prominent barriers for Christians to accept evolutionary creation. The first is Biblical interpretation. When contemporary Christians interpret the early chapters of Genesis literally, they do so out of a desire to take the text seriously. Yet the early church fathers saw these chapters as figurative—and that figurative interpretation did not lesson the important foundational truths taught in these passages. The contemporary literal reading is actually a modern approach to the text in that our scientific mindset inappropriately shapes the interpretation. Since science did not even exist at the time that Genesis was written, an overly literal interpretation can actually cause us to miss the inspired message that the Biblical authors were communicating.</p>

<p><span style="line-height: 1.3em;">The second barrier is the rhetoric of the New Atheists, who claim that it is impossible to accept evolution while still believing in God. Christians should challenge this. Traditional Christian views are not in conflict with modern science. Instead, they see nature as God's work, with St. Augustine writing that "nature is what God does." As humanity develops a scientific understanding of nature, we will only learn more about the handiwork of God.&nbsp;</span></p>
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        <pubDate>Fri, 15 Feb 13 07:00:14 -0800</pubDate>
        <dc:creator>Denis Alexander</dc:creator>
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        <title>A Scientific Commentary on Genesis 7:11</title>
        <link>http://biologos.org/blog/a&#45;scientific&#45;commentary&#45;on&#45;genesis&#45;711?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/a&#45;scientific&#45;commentary&#45;on&#45;genesis&#45;711?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Although committed to the principle of sola Scriptura, Calvin recognized that the Bible would have been written in terms its original recipients would have understood. Calvin inherited the medieval cosmology of his time, a way of viewing the world heavily influenced by Greek thought and one which was about to receive shocks from astronomers such as Copernicus and Galileo. But not just yet.</description>
        <content:encoded><![CDATA[<p><strong>Genesis 7:11</strong>: In the six hundredth year of Noah's life, in the second month, on the seventeenth day of the month, on that day all the fountains of the great deep burst forth, and the windows of the heavens were opened.</p>

<p><strong>Genesis 8:1</strong>: But God remembered Noah and all the wild animals and all the domestic animals that were with him in the ark. And God made a wind blow over the earth, and the waters subsided; 2 the fountains of the deep and the windows of the heavens were closed, the rain from the heavens was restrained, 3 and the waters gradually receded from the earth.</p>

<hr />

<p>The Flood narrative of Genesis 7-9 has played a prominent role in science and religion debates for over three hundred years and gave rise in earlier centuries to geological theories such as old earth catastrophism. While literary studies have uncovered the chiastic structure of the Flood story (see Gordon Wenham, “The Coherence of the Flood Narrative” Vetus Testamentum 28 (1978):336-48) and with it the theological pivot point of the entire narrative (Gen. 8:1 – “And God remembered Noah…), much of the popular attention remains on the questions regarding details (Is there THAT much water in the world to cover ALL the mountains to a depth of 15 cubits? Could you really fit two or seven of every animal species in an ark that size?) </p>

<p>Looking at a smaller matter, we find at the beginning and the middle of the narrative indications of an ancient Near Eastern worldview. As the story is told, the flood was not merely the result of excessive rain, but actually the convergence of the waters above the earth with the waters below the earth. It is, as one translation puts it, as if the sluice gates at the deep and of the heavens were thrown open and water poured in from above and below. This is a consistent picture from the Old Testament of a three-tiered universe—a dome above the earth holding back the heavenly waters, a flat earth with water on its surface, and water under an earth which is held up by pillars. </p>

<p>That the story is told using the cosmology of its time should not be unduly unsettling, nor that the story is reinterpreted as new understandings of the universe come into favor. By way of example, consider John Calvin and his understanding of the structure of the universe. Although committed to the principle of sola Scriptura, Calvin recognized that the Bible would have been written in terms its original recipients would have understood.   </p>

<p>Calvin inherited the medieval cosmology of his time, a way of viewing the world heavily influenced by Greek thought and one which was about to receive shocks from astronomers such as Copernicus and Galileo. But not just yet. Calvin still subscribed to the common conception of his day in which the four elements—earth, air, fire, and water—comprised the earthly sphere and possessed unique characteristics. The nature of air and fire was to rise, while the nature of earth and water is to sink.  Earth, being heavier than water, should sink to the center of the cosmos and water should compose the next layer. Both earth and water are spherical, i.e., naturally form spherically around the cosmic center. Thus the heavier spherical element of earth should be encased entirely within the lighter spherical element of water.</p>

<p>Notice what this does to the flood story. For Calvin, the amazing thing is that the world isn’t constantly under water and subject to flooding. In the cosmology of Calvin’s day, it does not take an act of God to cause a universal flood, but rather an actively present and restraining hand of God to keep the waters back in everyday circumstances and make inundation by water something other than universal. </p>

<p>Obviously, Calvin was wrong. Or perhaps we should say that medieval cosmology was flawed and justifiably gave way to new conceptions of the universe. The answer is not to return to an ancient Near Eastern cosmology, but to reinterpret cautiously within new and better cosmologies and to pay closest attention to the text and the theology of scripture.  </p>

<p>The geological and planetary sciences bring their own unique contributions and are of more interest than the latest expedition to discover the ark on Mt. Ararat. Is the flood story a universalization of a catastrophic regional event that burned itself into the psyche of ancient cultures in the Mediterranean basin? Various theories regarding a Black Sea venue for a catastrophic flood event are still in process of being sorted out. It’s intriguing. Or the question where the water on Planet Earth comes from? Was it always here as an emanation of vapors from the earth’s crust in its early formation, or has it accumulated over eons through the steady bombardment of earth by small, icy comets? It’s an intriguing scientific question that is in the midst of determination through testing.</p>

<h3>Preaching Suggestions</h3>

<p>When preaching on the story of the Flood, it is easy to get lost in the debates over particulars. As mentioned elsewhere, to tackle all the peripheral issues threatens to turn a sermon into a geology lecture. Other settings are better suited to addressing those questions, and those are best addressed open-endedly. </p>

<p>A brief explanation of ancient Near Eastern cosmology can be helpful to contextualize the story. If there are those who are tempted to think that a cosmology embedded in the Bible must be inspired and definitive, one can note that cosmology has changed by the New Testament. The Bible itself isn’t wed to a particular structure of the universe. </p>

<p>What is important is to keep the theology of the text front and center, and in that theology there are at least three non-negotiables from the flood narrative. First, human sin and violence threatens to undo a good creation (the flood is a de-creation event, a return of the waters mentioned in Genesis 1:2). Second, God remembers Noah, and never forgets his promises. Third, the end of the flood is a covenant with the whole earth regarding the stability and endurance of the natural order.
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        <pubDate>Tue, 05 Feb 13 08:00:43 -0800</pubDate>
        <dc:creator>Rolf Bouma</dc:creator>
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        <title>Science and the Bible: Assessing the Evangelical Encounter with Evolution</title>
        <link>http://biologos.org/blog/science&#45;and&#45;the&#45;bible&#45;assessing&#45;the&#45;evangelical&#45;encounter&#45;with&#45;evolution?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/science&#45;and&#45;the&#45;bible&#45;assessing&#45;the&#45;evangelical&#45;encounter&#45;with&#45;evolution?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Having now completed our study of the five main views about “Science and the Bible” held by conservative Protestants, I conclude with a final column, assessing the whole situation as I see it today.</description>
        <content:encoded><![CDATA[<p>Having now completed our study of the five main views about “Science and the Bible” held by conservative Protestants, I conclude with a final column, assessing the whole situation as I see it today. </p>

<p>For more than a century, evangelicals and fundamentalists have typically rejected both evolution and higher biblical criticism. Sometimes there are good reasons: the claims of some biblical scholars are so outrageous and the claims of some scientists so anti-religious, that a strongly negative response is entirely appropriate. Too often, however, the evangelical encounter with modern science conforms to what <a href=" http://www.youtube.com/watch?v=eQviXavl1BA">historian Mark Noll</a> has called “the scandal of the evangelical mind”—namely, “that there is not much of an evangelical mind.” Attitudes toward science have been crucial to this analysis. As Noll says, “since 1960 creationism has done more than any other issue except abortion to inflame the cultural warfare in American public life.” (p. 192) </p>

<p>Readers who want to know more about Noll’s book and its reception should go <a href="http://www.liberalevangelical.org/index.php?option=com_content&view=article&id=144:the-scandal-of-the-evangelical-mind-by-mark-noll&catid=68:reviews-recent-a-relevant&Itemid=123">here</a> and <a href="http://www.firstthings.com/article/2008/08/003-the-scandal-of-the-evangelical-mind-a-symposium-33">here</a>. His conclusions about evangelicals and science are fully consistent with those I am about to present.</p>

<h3>Evangelicals in Tension with Science</h3>

<p>Evangelicals exhibit <em><strong>considerable tension and ambivalence</strong></em> when it comes to science, especially human evolution. On the one hand, evangelicals enthusiastically embrace the findings of science, when it comes to most applications in medicine and engineering. They also accept the experimental sciences, such as physics, chemistry, physiology, or thermodynamics. They have no problems with gravitation, the periodic table, the circulation of the blood, or the law of entropy. Here, their attitude is highly empirical: if it can be shown from repeatable experiments and observations, it’s true and presents no challenge whatsoever to religious belief.</p>

<p>On the other hand, evangelicals are quite hesitant to accept some conclusions of the so-called historical sciences, such as geology, cosmology, and evolutionary biology. Fundamentalists reject the very legitimacy of those sciences, and have created their own alternative explanation, “creation science,” which comports with their particular views of biblical authority and hermeneutics. Evangelicals are more ambivalent. As we’ve seen, many evangelicals accept the big bang and modern geology, with a 4.65 billion-year-old earth and the enormously long history of living things before humans arrived on the planet. But evolution–understood here to mean the common descent of humans and other organisms–presents very serious problems for many, perhaps most, evangelicals. This motivates them to look for alternative views.  </p>

<p>The alternatives evangelicals embrace are precisely those we have studied in this series. Some eagerly support the YEC view. Others prefer one of the many varieties of the OEC view. Many like the strident tone of the ID movement, with its vigorous assault on biological and cultural “Darwinism” and its near-universal rejection of human evolution. For most evangelicals, however, TE is probably not a viable option at present, for biblical and theological reasons.</p>

<h3>Reconciling Evolution with Scripture</h3>

<p>Most evangelicals do not see any reasonable way to combine human evolution with the following beliefs:</p>

<ul><li>the uniqueness of humans, who alone bear the “image of God”</li>

<li>the fall of Adam and Eve, the original parents of all humans, from a sinless state, by their own free choices to disobey God</li>

<li>the responsibility of each person for their own actions and beliefs, within a universe that is not fully deterministic</li>

<li>the redemption of individual persons by the atoning sacrifice of Christ.</li></ul>

<p>Evangelicals cannot and must not be separated from these crucial beliefs about human dignity, freedom, responsibility, sin, and redemption. The 64-dollar question is: can these beliefs be maintained without simultaneously affirming the necessity of an historical, separately created first human pair? The answer is probably in the hands of evangelical academics, especially theologians and biblical scholars. Can they be persuaded that the scientific evidence for evolution is sufficiently strong to warrant a re-examination of the traditional view?  Can a credible gospel and credible science be harmonized?  </p>

<p>There exists an enormous gap between popular conceptions of science–conclusions, methods, and attitudes–and those of scientists themselves. This gap is not unique to science among practitioners of specialized knowledge, and it is not unique to evangelicals among the lay public.  But it is real and very significant, and it affects theologians and biblical scholars no less than anyone else. Those who try to bridge this gap are mostly scientists (in their role as educators at colleges and universities and insofar as they write books for lay readers) and science journalists.  Many influential members of those professional communities are skeptical or even strongly hostile toward Christian beliefs, and this can exacerbate an already difficult state of affairs. If ways can be found to popularize good science, while showing appropriate sensitivity to the concerns of evangelicals, it would be a very good thing.</p>

<h3>Signs of Hope</h3>

<p>Certainly there are reasons to hope.  The conversation about science and religion is considerably broader now than it was at the time of the Scopes trial in 1925. Back then, many Protestants faced a very grim choice. On the one hand, they could follow politician William Jennings Bryan and the fundamentalists, rejecting modern science in the name of biblical authority and orthodox beliefs. On the other hand, they could follow theologian Shailer Mathews and the modernists, rejecting biblical authority and orthodox beliefs in the name of modern science. There was no one out there like John Polkinghorne, Francis Collins, Joan Centrella, Owen Gingerich, Simon Conway Morris, William Phillips, or Ian Hutchinson—to name just a few of the many top scientists today who accept evolution while affirming the divinity of Jesus, the bodily resurrection, and the actual divine creation of the universe. But they are all scientists, not theologians (except for Polkinghorne, who is both). In Galileo’s day, it was the scientists who eventually convinced the theologians and biblical scholars to accept Copernicus’ theory of the earth’s motion around the sun. But, it took a long time, and the process was difficult and often painful. Thus far, the biblical scholars and theologians who have tried to move the conversation forward have not been very well received, as Richard Ostling has <a href="http://www.christianitytoday.com/ct/2011/june/historicaladam.html">so capably reported</a>. I suspect we are in for more of the same.</p>

<h3>It’s Your Turn to Talk</h3>
<p>That’s what I think. What do you think? I’ll mainly be listening quietly, since I’ve now said all I wanted to say. Thank you all for hanging in there for ten months—far longer than I had originally anticipated. After a short respite I’ll return with a new series, but I’ll keep the topic under wraps for the time being.</p>]]></content:encoded>
        <pubDate>Thu, 17 Jan 13 06:00:57 -0800</pubDate>
        <dc:creator>Ted Davis</dc:creator>
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        <title>Series: Made in the Image of God: The Theological Implications of Human Genomics</title>
        <link>http://biologos.org/blog/series/made&#45;in&#45;the&#45;image&#45;of&#45;god&#45;the&#45;theological&#45;implications&#45;of&#45;human&#45;genomics?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/made&#45;in&#45;the&#45;image&#45;of&#45;god&#45;the&#45;theological&#45;implications&#45;of&#45;human&#45;genomics?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>This series by Denis Alexander reflects on advancements in genomics as well as their theological implications. He focuses on the relatedness of hominin genomes, arguing that this does not interfere with the image of God in humans. The image of God depends more on the capacity for relationship and covenant, not on a list of particular physical qualities. He then discusses why the recent studies of genomics provide “no grounds for genetic determinism.”</description>
        <content:encoded><![CDATA[<p class="intro">This post first appeared on <em><a href="http://www.huffingtonpost.com/dr-denis-alexander/made-in-the-image-of-god-_b_1182892.html" target="_blank">The Huffington Post</a></em>.</p>

<p>About a year ago I posted the <a href="/blog/made-in-the-image-of-god-the-theological-implications-of-human-genomics-1">first article in this series</a>, asking whether recent advances in genomics made any difference to the Judeo-Christian notion of humanity being made in the 'image of God'. That article focused on DNA sequencing data from our closest relatives. This article will focus on the issue of genetic determinism.</p>

<p>Theologians have spent many centuries mining the rich vein of the 'image of God' metaphor. Central to the idea is humanity with spiritual capabilities and responsibilities, equipped for moral decision-making and a relationally rich life in community. Historically, the idea has contributed to the conviction that each human individual has an absolute value, independent of their ethnicity, educational level, health status or income.</p>

<p>Do recent advances in genomics threaten or support such a view of humankind, or are they just neutral? Irrespective of one's belief in God, or not, this is of more than passing interest. Imagine the poor person wrestling for years with the great questions of life and finally deciding to become an atheist, only to then be informed that a cognitive bias derived from his particular set of genetic variants made that decision pretty much inevitable anyway. Such news might be equally unsettling for the person who had just struggled to faith following years of agnosticism. Our deepest human feelings are closely connected with the idea that we choose our own path through life.</p>

<p>The flourishing of genomics in the early part of the 21st century has certainly conveyed the message to many that one's destiny is written into one's genome. Whereas scientists are generally scrupulously careful not to give the impression that there is any such entity as a "gene for" some human trait, by the time the latest discovery appears in the media, such caution is often thrown to the winds. The past year has seen the trumpeting of a <a href="http://www.newscientist.com/article/dn20451-teen-survey-reveals-gene-for-happiness.html" target="_blank">"gene for happiness,"</a> a <a href="http://www.huffingtonpost.com/2011/11/15/kindness-genes-caring-trustworthiness_n_1093483.html" target="_blank">"kindness gene"</a> and a "believer gene." It is not even a question of education, but "genes are to decide" if you are a "caring person." <a href="http://www.decodeme.com/" target="_blank">Genetic testing websites</a> assure us that "your genes are a road-map to better health," and we all know that road-maps are fixed. Small wonder that there is a creeping genetic fatalism around that subverts the idea of personal responsibility.</p>

<p>Fatalism in itself impacts on human behavior. Studies have shown that subjects exposed to the writings of authority figures doubting free-will are then more likely to cheat. Conversely, workers convinced of the reality of free-will are rated higher in the work-place than those whose beliefs tend more towards determinism.</p>

<p>The reality is that recent genetics research has continued to move steadily away from any notion of genetic fatalism, highlighting the sheer complexity of the genome, and providing some fascinating examples of the ways in which our choices impact upon our own genomes. There is no gene "for" any complex human trait because in fact genes encode proteins or other types of information-containing molecules, and thousands of genes collaborate together during human development in interaction with the environment to generate the unique human individual that each person represents. Those requiring an introduction for the non-specialist are referred to <a href="http://www.amazon.com/Language-Genetics-Introduction-Templeton-Religion/dp/1599473437/ref=sr_1_2?s=books&ie=UTF8&qid=1325614584&sr=1-2" target="_blank">"The Language of Genetics."</a></p>

<p>Epigenetics adds further layers of variation and complexity. This refers to the chemical modifications of the DNA that cause genes to be switched on or off. It is such epigenetic modifications that generate the 220 specialized tissues of our bodies. Such acquired changes can even be inherited across several generations, certainly in plants and animals, and maybe in humans as well. In choosing to smoke, drink in excess, or take drugs, we also choose to modify our genomes.</p>

<p>So it turns out that even identical twins are not really genetically identical, developing different profiles of epigenetic modification as they go through life. This no doubt contributes to the otherwise surprising result that the age of death of identical twins, who share identical genomes, is comparable with that observed in non-identical twins, whose genomes are as different from each other as any two sibs. In one study of 184 pairs of twins in Spain, the difference in the age of death between the identical twin pairs was seven years on average, but such averages hide the fact that the age differences ranged from a couple of weeks to eighteen years. In the case of the non-identical twins, the difference in age at time of death was nine years, and the range was three to nineteen years. So there was really not that much in it.</p>

<p>What would happen if there was a genetic marker that identified nearly everyone in prison, marking them out as genetically distinct from half the world's population? What would that do to our ideas about genetic fatalism and convictions about moral responsibility? As it happens that marker already exists. Out of 131 countries worldwide, <a href="http://www.nationmaster.com/graph/cri_pri_fem-crime-prisoners-female&int=-1" target="_blank">an average of 96 percent of the prisoners are male</a> and, in this case, no complicated genetic studies are needed to know that the genetic marker that identifies this population is the Y chromosome. So universal is the correlation between the Y chromosome and criminality that we can safely say that no other genetic correlation will ever be found between a variant genome and criminality that surpasses this one. And yet we still hold nearly all males responsible for their criminal actions and put them in jail as soon as they're convicted. Furthermore, we note that most people who possess a Y chromosome go through life without committing a crime. So having a Y chromosome, with its unique set of genes, does not "determine" human criminality, although clearly we cannot go to the opposite extreme and say that it is completely irrelevant for patterns of human behavior.</p>

<p>The point in citing such examples is not to suggest that our genomes have nothing to do with our lives. They certainly do, not least in their significant contributions to our personality differences. The point rather is that the latest results in genetics provide no grounds for fatalism, instead highlighting the richness and diversity of the human population, and our own moral responsibilities, including the challenge to be good stewards of our genomes.</p>

<p>An argument for the existence of God this is not. But for those of us whose world-view is shaped by the conviction that we humanity are made in God's image, it is good to know that the latest genetics is consistent with such a perspective.</p>]]></content:encoded>
        <pubDate>Tue, 15 Jan 13 06:00:13 -0800</pubDate>
        <dc:creator>Denis Alexander</dc:creator>
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        <title>Augustine of Hippo and Two Books Theology, Part 2</title>
        <link>http://biologos.org/blog/augustine&#45;of&#45;hippo&#45;and&#45;two&#45;books&#45;theology&#45;part&#45;2?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/augustine&#45;of&#45;hippo&#45;and&#45;two&#45;books&#45;theology&#45;part&#45;2?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Augustine had a great deal to say about those chapters in Genesis that are especially controversial within Christianity today.</description>
        <content:encoded><![CDATA[<h3>Scripture and Creation</h3>

<p>Augustine had a great deal to say about those chapters in Genesis that are especially controversial within Christianity today. In fact, Augustine dedicated about as much as any other Christian writer to the first few chapters of Genesis, so there is little guesswork we have to do in ascertaining what he believed Scripture to claim about creation. First of all, Augustine clearly rejected the notion that God had created the earth in six 24-hours periods. Instead, he believed that the universe was created instantaneously, and that the six days reported in Genesis were a metaphor for the various levels of dimensions of the created realm—something akin to what ancients referred to as the ‘Great Chain of Being’. But this is not to say that Augustine believed that the world was created as it is today in that instant. Rather, he affirmed that God created the world with inchoate potential for further development, like an acorn that will grow into a great tree when planted in the ground. </p>

<p>Augustine therefore affirmed that Creation has evolved and continues to evolve, though not driven by random natural processes, as affirmed by classical Darwinism. Instead, such evolution is governed providentially both via the inchoate potentialities present in the world from its beginning and by God’s ongoing governance of the universe.<sup>4</sup>  We should be careful not to turn Augustine too quickly into a modern advocate of theistic evolution, but the similarities are nevertheless significant. Augustine affirmed these ideas not on the basis of an attempt to accommodate Scripture to scientific discovery, but based upon his own reading of Scripture! Indeed, I think it fair to say that the great father of Western Christianity was something of a proto-evolutionary theist, and therefore one whose work deserves far more attention by those seeking to be faithful to both Scripture and Christian tradition while making sense of the claims of contemporary science.</p>

<p>Of course, we need to be careful not to push such claims <em>too</em> far. Augustine himself resists such a move by recognizing both the contingency of human interpretations of Scripture and the dangers of unintentionally imposing our own views on Scripture. A rather long, but significant quote from Augustine makes this point all too clear:</p>

<blockquote>Let us suppose that in explaining the words, “And God said, ‘Let there be light,’ and light was made,” one man thinks that it was material light that was made, and another that it was spiritual. As to the actual existence of “spiritual light” in a spiritual creature, our faith leaves no doubt; as to the existence of material light, celestial or supercelestial, even existing before the heavens, a light which could have been followed by night, there will be nothing in such a supposition contrary to the faith until unerring truth gives the lie to it. And if that should happen, this teaching was never in Holy Scripture but was an opinion proposed by man in his ignorance.<br /><br />

On the other hand, if reason should prove that this opinion is unquestionably true, it will still be uncertain whether this sense was intended by the sacred writer when he used the words quoted above, or whether he meant something else no less true. And if the general drift of the passage shows that the sacred writer did not intend this teaching, the other, which he did intend, will not thereby be false; indeed, it will be true and more worth knowing. On the other hand, if the tenor of the words of Scripture does not militate against our taking this teaching as the mind of the writer, we shall still have to enquire whether he could not have meant something else besides. And if we find that he could have meant something else also, it will not be clear which of the two meanings he intended. And there is no difficulty if he is thought to have wished both interpretations if both are supported by clear indications in the context.<br /><br />

Usually, even a non-Christian knows something about the earth, the heavens, and the other elements of this world, about the motion and orbit of the stars and even their size and relative positions, about the predictable eclipses of the sun and moon, the cycles of the years and the seasons, about the kinds of animals, shrubs, stones, and so forth, and this knowledge he holds to as being certain from reason and experience. Now, it is a disgraceful and dangerous thing for an infidel to hear a Christian, presumably giving the meaning of Holy Scripture, talking nonsense on these topics; and we should take all means to prevent such an embarrassing situation, in which people show up vast ignorance in a Christian and laugh it to scorn. The shame is not so much that an ignorant individual is derided, but that people outside the household of the faith think our sacred writers held such opinions, and, to the great loss of those for whose salvation we toil, the writers of our Scripture are criticized and rejected as unlearned men.<br /><br />

 If they find a Christian mistaken in a field which they themselves know well and hear him maintaining his foolish opinions about our books, how are they going to believe those books in matters concerning the resurrection of the dead, the hope of eternal life, and the kingdom of heaven, when they think their pages are full of falsehoods on facts which they themselves have learnt from experience and the light of reason? <br /><br />

Reckless and incompetent expounders of holy Scripture bring untold trouble and sorrow on their wiser brethren when they are caught in one of their mischievous false opinions and are taken to task by those who are not bound by the authority of our sacred books. For then, to defend their utterly foolish and obviously untrue statements, they will try to call upon Holy Scripture for proof and even recite from memory many passages which they think support their position, although they understand neither what they say nor the things about which they make assertion.<sup>5</sup></blockquote>

<p>I am tempted here to let Augustine have the final word, but I think there are three final points worth highlighting here as a way of connecting this quote to the two books theory and thereby concluding our discussion of Augustine:</p>

<ol><li>The Book of Nature is clearly revelatory of God’s providential work in Christ, and even nonbelievers are capable of comprehending its complex order through the proper use of reason and experience (i.e. science properly understood).</li>
<li>The Book of Scripture is clearly revelatory of God’s providential work in Christ, and therefore is true and authoritative in <em>all</em> matters. The problem is that we often misinterpret Scripture by imposing our own preconceptions upon it rather than allowing it to speak for itself.</li>
<li>God’s two books can and should be read together in harmony when we are open to allowing them to speak for themselves on their own terms. Ultimately, they cannot contradict each other because the source of both is the same God and if they seem to be in contradiction it is because we have misread one or both of them, and we need to be willing therefore to allow ourselves to be open to thinking about either one in different ways, trusting that God will ultimately lead us to see the truth of the whole.</li></ol>

<h3>Notes</h3>
<p class="date">4.  In truth, these two kinds of providence are one and the same for Augustine because God in some ‘stands’ outside of time as its eternal creator. So, for Augustine, eternality is not everlasting time, but the complete lack of temporality altogether. In this sense, all of creation at all times is eternally present to God, and there is ultimately no difference between God’s governance over creation at its beginning from God’s governance at any other moment in its history. In a way, God governs all of history all at once.<br />
5.  This quote is excerpted from St. Augustine, <em>The Literal Meaning of Genesis</em>, 2 vols., translated and annotated by John Hammond Taylor, SJ (Paulist Press, 1982), volume one of which can be read <a href="http://college.holycross.edu/faculty/alaffey/other_files/Augustine-Genesis1.pdf">here</a>.</p>
]]></content:encoded>
        <pubDate>Sat, 05 Jan 13 06:00:56 -0800</pubDate>
        <dc:creator>Mark H. Mann</dc:creator>
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        <title>Series: To Serve and Preserve—Genesis 2 and the Human Calling</title>
        <link>http://biologos.org/blog/series/to&#45;serve&#45;and&#45;preservegenesis&#45;2&#45;and&#45;the&#45;human&#45;calling?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/to&#45;serve&#45;and&#45;preservegenesis&#45;2&#45;and&#45;the&#45;human&#45;calling?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In this series, David Buller pays careful attention to the original language and cultural context of Genesis 2, revealing that our responsibility to care for creation is a sacred task given to us by God, not merely a modern secular activity.  By taking Scripture seriously, we learn that we have a God&#45;given mandate to be diligent stewards of His creation.</description>
        <content:encoded><![CDATA[<p>The Bible provides us with several beautiful, theologically rich accounts of creation – in Genesis 1 and 2, but also in the Psalms and Job as well. If I had to pick a favorite from these passages, I think I’d choose Genesis 2, which tells the story of creation by zeroing in on the creation of humanity and a garden somewhere “in the East.” This chapter is packed with theological truths, yet we unfortunately often miss them; we may think of this chapter as less significant than Genesis 1, or merely as a setup for Genesis 3. At the same time, our curiosity about scientific matters (and blindness to symbolic language) might predispose us to skip right over the theological truths that this passage teaches. But if we approach Genesis 2 on its own terms, what might we learn from it?</p>

<p>A careful study of this chapter is important because it gives us a beautiful picture of the proper relationships we should have with God, the natural world, and each other. Numerous posts could be written on each of these relationships, but in this post I’d like to focus on how Genesis 2 describes our relationship to the rest of creation. These relationships are given deeper significance when we recognize that the garden is being described as a temple-like “sacred space,” not just an ordinary garden. There are numerous clues in the passage that this is the case. John Walton writes that the Garden/temple parallels “are givens that are simply assumed by the author and audience”<sup> 1</sup> of Genesis, but we completely miss them if we take fail to read the text the way the ancient author and audience would have.</p>

<h3>Temples and Gardens</h3>

<p>In the Ancient Near East (ANE), all sacred space was conceived of as something like a temple; it was a place where humans would serve God and experience their closest access to Him.  Thus in ANE cultures, a temple complex was seen as being the apex and a microcosm of creation and the earthly abode of the god(s). Descriptions of temples often pictured a river flowing from under the temple and flowing out through an adjacent garden, symbolizing the fertile extravagance of the divine provision. A temple garden would be no mere backyard vegetable patch, but rather an elaborate, beautifully landscaped botanical park.</p>

<p>The same temple/river picture can be seen in the description of the eschatological temple in Ezekiel (ch. 47) and Revelation (chs. 21-22, where the final temple is God Himself). Sound familiar? In Genesis 2 we also have a river flowing “from Eden [‘Abundance’] to water the garden” (v. 10).<sup>2</sup> Not only is the Garden filled with “every beautiful tree with edible fruit” (v. 9), but the area itself is rich with gold, resins, and gemstones (sometimes translated “bdellium and onyx”), the same materials later used to decorate Israel’s tabernacle, temple, and priestly garments. Furthermore, many scholars are convinced that the design of temple’s Menorah (candlestick) deliberately echoes the Garden’s Tree of Life, and some also think that the Ark of the Covenant in the temple parallels the Tree of the Knowledge of Good and Evil.<sup>3</sup></p>

<h3>Made for Sacred Service</h3>

<p>As inhabitants of this temple-garden, it comes as no surprise that Adam and Eve enjoyed a special closeness to God’s presence (Gen. 3:8 pictures God taking an evening walk through the Garden). But as inhabitants of the Garden, they had special responsibilities as well; they were told “to farm it and take care of it” (v. 15). The two Hebrew words used here have a broader range of meaning than their English translations suggest. As John Walton writes, the broader meaning of the word here translated “to farm” (particularly when used in a sacred context) “is often connected to religious service deemed as worship (e.g., Ex. 3:12) or of priestly functionaries serving in the temple precinct (e.g., Num. 3:7-10).”<sup> 4</sup></p>

<p>The usage in Genesis 2 seems to have two layers of meaning: “farm/cultivate the Garden” (since it is an agricultural space) and “serve/worship God” (since the Garden is also a sacred space). The dual meanings are as intertwined in Hebrew grammar as they are intended to be in practice. The second Hebrew word (translated “take care of”) has a deeper religious meaning as well. The word can refer to protecting farmland from external threats, but in a danger-free sacred space like the Garden, the word more generally refers to “performing duties on the [temple] grounds,” that is, to “sacred service.”<sup>5</sup></p> 
 
<p>Walton therefore translates these two Hebrew words as “serve and preserve.”  These same words appear again together several times in Numbers to describe the priest’s duties in the temple.  Because of all this, Gordon Wenham describes Adam as “perhaps…an archetypal Levite” with a “quasi-priestly” role in the garden.<sup>8</sup>  Eve was created as Adam’s companion and “helper” in his work, a word which nowhere in the OT refers to a subordinate assistant, but rather to one who is at least equal to the one being helped.<sup>9</sup></p>

<p>Genesis 2 should banish from our minds any idea that creation care is somehow “secular” work for a Christian, or that it is not even our responsibility. This was the first task given to humanity, to serve and worship God by cultivating and protecting the natural world. The centrality of our responsibility in this regard is even clearer when we back up to the beginning of the chapter. We know there was a river “flow[ing] from Eden to water the garden” (v. 10), symbolizing that “all fertility emanates from the presence of God.”<sup> 10</sup> Nonetheless there could be no cultivated plants in the garden because “there was still no human being to farm the fertile land” (v. 5). With no gardener and no rain, the ground was watered indiscriminately; a human was needed to irrigate the waters and support a garden.<sup>11</sup> Therefore, God “formed the human from the topsoil” (Hebrew wordplay equivalent to “human from the humus”) before planting the garden. God certainly could have watered it another way without needing us, but He chose not to, and the resulting collaborative picture here is a beautiful one. All provision flows from God, but He has chosen to give us an essential part in further channeling his provisions in the natural world. Far from countering God’s creative work by destroying nature, we are intended to work with Him to preserve and further it.</p>

<p>Of course, though created primarily to glorify God, the world was also made to provide us abundantly with the food and resources that we need to live (Gen. 2:16). Yet we don’t need to look far to see that we have often failed in our responsibility to properly care for creation. We live in a fallen world, and sin has fractured the intended harmony of our relationships with God, creation, and each other (as described in Genesis 3:14-24).</p>

<p>I recently heard a striking crystallization of this fallen perspective in Spencer Tracy’s narration in the opening scene of the sprawling 1962 western film “How the West Was Won.” As the camera flies over majestic Western fields and mountains, the narrator tells us that “This land has a name today, and is marked on maps. But the names and the maps all had to be won, won from nature and from primitive man.” This is the fallen perspective – advancing our human purpose on earth is done through <em>defeating</em> nature and other people (derogatively labeled “primitive,” as well) apart from God. This perspective perfectly illustrates the conflict-based relationships that sin brings about, already described for us back in the first chapters of the Bible.</p>

<p>Are we doomed, then, to live helplessly in this way? If this is just the way the world is and the way we are, shouldn’t we just accept that? Apart from Christ the answer would be “yes,” but the New Testament makes it clear that though we are still fallen, the saving work of Christ has brought about a profound change in us. As N.T. Wright makes clear in his book <em>Surprised by Hope</em>, Jesus taught (and the Resurrection vindicated) that the Kingdom of God “was and is breaking in to the present world, to earth.”<sup> 12</sup>  Christ’s Resurrection was the first act of the future new creation. If we are truly “born again” into this new reality, this new way of living, we must strive (in the Spirit’s power) to live lives of wholeness and right relationships, putting our sinful nature to death (Colossians 3). In doing so, we would be wise to include Genesis 2 as we seek to follow God’s will and God’s Kingdom, “on earth as it is in heaven” (Matt. 6:10).</p>

<p class="intro">In part 2 of this series, David describes how Genesis 1, Genesis 2, and modern scientific accounts offer complementary and mutually enriching perspectives in our understanding of God's creation.</p>

<h3>Notes</h3>
<p class="date">1.  John H. Walton, <em>Ancient Near Eastern Thought and the Old Testament: Introducing the Conceptual World of the Hebrew Bible</em> (Grand Rapids, MI: Baker Academic, 2006), 125.<br />
2.  Biblical quotations are from the Common English Bible unless otherwise noted.<br />
3.  Both symbolized divine wisdom that humans had to receive from God obediently, with the proper “fear of God” that the Old Testament wisdom literature stresses as a prerequisite. Disobediently eating the Tree’s fruit would lead to death and disobeying God would lead to expulsion from the Garden. Similarly, disobediently touching the Ark brought death (Num. 4:15, 2 Sam. 6:1-7) and disobeying God’s instruction led to Israel’s exile from their Eden, the land of Canaan.<br />
4.  John H. Walton, <em>Genesis</em> (Grand Rapids, MI: Zondervan, 2001), 172.<br />
5.  Ibid., 173.<br />
6.  Ibid., 192.<br />
7.  See Numbers 3:7-8, 8:26, 18:5-6.<br />
8.  Gordon J. Wenham, “Sanctuary Symbolism in the Garden of Eden Story,” in <em>“I Studied Inscriptions from Before the Flood”: Ancient Near Eastern, Literary and Linguistic Approaches to Genesis 1-11</em>, ed. Richard S. Hess and David Toshio Tsumura (Winona Lake, IN: Eisenbrauns, 1994), 401.<br />
9.  Walton, <em>Genesis</em>, 176.<br />
10.  Ibid., 170.<br />
11. This follows Walton’s illuminating exegesis of this passage in <em>Genesis</em>, 164-65.<br />
12.  N.T. Wright, <em>Surprised by Hope: Rethinking Heaven, the Resurrection, and the Mission of the Church</em> (New York: HarperOne, 2008), 201.</p>

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        <pubDate>Thu, 03 Jan 13 06:00:12 -0800</pubDate>
        <dc:creator>David Buller</dc:creator>
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        <title>Series: Science and the Bible: Intelligent Design</title>
        <link>http://biologos.org/blog/series/science&#45;and&#45;the&#45;bible&#45;intelligent&#45;design?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/science&#45;and&#45;the&#45;bible&#45;intelligent&#45;design?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In this series, Ted Davis identifies the history, core tenets and assumptions about the Intelligent Design view.</description>
        <content:encoded><![CDATA[<h3>What’s in a name?</h3>
<p>According to <a href="http://www.merriam-webster.com/">Merriam Webster</a>, the term “intelligent design” has been used since at least 1847, in reference to “the theory that matter, the various forms of life, and the world were created by a designing intelligence.”  That’s a decent definition, also consistent with those offered by today’s proponents of intelligent design (ID). For example, the leading ID think tank, The Discovery Institute (Seattle), has <a href="http://www.intelligentdesign.org/whatisid.php">this</a>:</p>

<p style="margin: 0 0 0 10px;"><em>Intelligent design refers to a scientific research program as well as a community of scientists, philosophers and other scholars who seek evidence of design in nature. The theory of intelligent design holds that certain features of the universe and of living things are best explained by an intelligent cause, not an undirected process such as natural selection.</em></p>

<p>And in the opening sentence of a book he edited with philosopher Michael Ruse, ID theorist William Dembski said, “Intelligent Design is the hypothesis that in order to explain life it is necessary to suppose the action of an unevolved intelligence.” (<em>Debating Design</em>, p. 3)</p>

<p>On the other hand, while a recent contest on a prominent intelligent design (ID) <a href="http://www.uncommondescent.com/intelligent-design/contest-who-invented-the-phrase-intelligent-design-judged/">website</a> uncovered several other early uses of the term, it is important to note that it does not always mean exactly the same thing in each reference. The term itself has an interesting history, and while ID authors obviously did not invent the term “intelligent design,” they have given it specific content in recent years.  Indeed, they have even <em>removed</em> content in some cases: a point I will return to later is that, though it seems the only viable candidate for such an “unevolved intelligence” is God, ID proponents sometimes seem to do cartwheels to avoid saying as much.  When a term has such a complicated past, there simply is no substitute for looking at specific references in their own contexts as we move to seeing how ID plays out today as one of the 5 ways of relating science and the Bible. </p>

<p>Interestingly, many Protestant “modernist” scientists and theologians from William Jennings Bryan’s day (see my <a href="http://biologos.org/blog/science-and-the-bible-theistic-evolution-part-5">previous column</a>) unhesitatingly endorsed the idea that a designing intelligence lay behind nature. At least one such person, Nobel prize-winning physicist Arthur Holly Compton, even used the very term “intelligent design” in an address he gave at a Unitarian church in 1940: “The chance of a world such as ours occurring without intelligent design becomes more and more remote as we learn of its wonders.” (Quoting his pamphlet from 1940, <em>The Idea of God as Affected by Modern Knowledge</em>, p. 13. For more about this aspect of Compton’s views, click <a href="http://www.asa3.org/ASA/PSCF/2009/PSCF9-09Davis2.pdf">here</a>.) However, Compton regarded design as a philosophical and theological inference from science, not an explanation <em>within</em> science to be invoked when other explanations fail. He also accepted the common ancestry of humans and other organisms. This is a significant difference from the ID movement today, which offers ID as a <em>scientific alternative</em> to Darwinian evolution and (at least in many cases) seeks to undermine public confidence in common ancestry (even though ID <em>per se</em> is not actually opposed to it). </p>

<p>If any ID proponents are sympathetic to the type of religious modernism that Compton and his friends embraced, I cannot tell you who they are. In a curious, ironic twist, ID is often used by conservative Christian apologists partly to defend a cluster of traditional theological and hermeneutical positions that none of the modernists would have defended. A further irony: the intellectual descendants of the modernists—those scientists and theologians who occupy the left wing of the modern “dialogue” of science and religion—exhibit a studied avoidance of the term “design,” disconnecting them on that score from the modernists of the 1920s. </p>

<p>Many other contemporary writers, including some evangelical TEs, are also reluctant to use the word “design,” precisely because in their view it has been co-opted by ID proponents and they do not want readers to misunderstand their position(s). They may agree with ID proponents that certain features of the universe reflect divine design, but because they do not see design as a <em>scientific</em> explanation they employ other language. (Likewise, the YECs have co-opted the word “creationism” to mean just one specific understanding of God’s creative activity, leading most advocates of other views either to provide their own definitions of the word or else to avoid using it altogether. Politics dogs this conversation at every turn.)</p>

<h3>Core Tenets or Assumptions of Intelligent Design</h3>
<p>With that bit of historical context for the term “Intelligent Design,” let’s now look at the first of the Core Tenets of this perspective in its current state, and as it is most often used by those associated with the Intelligent Design movement.</p>

<p><strong>(1) The Bible is <em>NOT</em> to be mentioned (at least for now); ditto for “God” and “theology” as far as possible.</strong></p>

<p>This is a deliberate strategy, adopted for political reasons to keep arguments at the level of philosophy and science. Here, “political” refers to the American political system, with its constitutional disestablishment of religion, not to partisan politics. Since the 1980s, federal courts have consistently ruled that “creationism” (which was specifically of the YEC variety in the relevant cases) is sectarian religion, not science, and therefore it cannot be taught in public school science classes. Anxious to avoid a similar fate, proponents of ID always want to ensure that they are not perceived as advocates of “creationism.” The less they mention God and the Bible, the reasoning goes, the less likely they are to fall afoul of those decisions.</p>

<p class="caption-center"><img src="http://biologos.org/uploads/static-content/first_amendment.jpg" alt="" height="331" width="424"  /><br />The First Amendment to the U.S. Constitution, pertaining to the freedom of religion and the freedom of the press. <br />Source: http://www.rochester.edu/college/psc/images/Courses/Spring2008/FirstAmendment.png</p>

<p><a href="http://en.wikipedia.org/wiki/Phillip_E._Johnson">Phillip Johnson</a>, the former law professor who effectively began the ID movement some twenty years ago, has put it bluntly: “To put things on a more rational basis, the first thing that has to be done is to get the Bible out of the discussion.” He quickly adds, “This is not to say that the biblical issues are unimportant; the point is rather that the time to address them will be after we have separated materialist prejudice from scientific fact.” (<a href="http://www.touchstonemag.com/archives/article.php?id=12-04-018-f">“The Wedge: Breaking the Modernist Monopoly on Science,”</a> <em>Touchstone: A Journal of Mere Christianity</em>, July/August 1999, p. 22.) </p>

<p>If God and the Bible are really to be left out for the time being, then why am I discussing ID in a series on “Science and the Bible”? It’s a fair question. I simply don’t see any way meaningfully to avoid talking about ID apart from the culture wars in which it is embedded (I’ll say more about this in a subsequent column), and the Bible is never far from the surface when the battle being fought involves origins. Conservative Christians sense that ID really <em>is</em> about God—Dembski’s “unevolved intelligence”. As Dembski himself <a href="http://www.leaderu.com/offices/dembski/docs/bd-the_ac.html">has said</a>, “no intelligent agent who is strictly physical could have presided over the origin of the universe or the origin of life”, and there aren’t a lot of candidates for that job. Many Christians also identify strongly with the ways in which ID seeks to confront the secular establishment, in an explicitly-stated effort to combat what Johnson calls “the modernist scientific and intellectual world, with its materialist assumptions.” (“The Wedge,” p. 23.) They see it as a way of getting traditional theistic perspectives and Christian values back into the academy, once “design” has become an acceptable academic talking point—and it isn’t very far from there to conversations about “science and the Bible.” If this were not so, then why would so much ID literature be published by Christian presses? Indeed, when I tell church audiences with a straight face that ID purports not to be about the Bible at all, I’m usually met with considerable skepticism.</p>

<p>When I’m back in about two weeks, we’ll look at further Core Tenets of ID—the ones that have even less to do with the Bible, explicitly, and more to do with the way we approach the  study of the natural world.</p>
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        <pubDate>Tue, 18 Dec 12 07:00:11 -0800</pubDate>
        <dc:creator>Ted Davis</dc:creator>
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        <title>Series: Surprised by Jack: C.S. Lewis on Mere Christianity, the Bible, and Evolutionary Science</title>
        <link>http://biologos.org/blog/series/surprised&#45;by&#45;jack?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/surprised&#45;by&#45;jack?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In this five&#45;part series, David Williams responds to the book The Magician’s Twin: C.S. Lewis on Science, Scientism, and Society by John West and the Discovery Institute, showing that C.S. Lewis was a very complicated thinker whose views are hard to line up exactly with any camp in the current debates over the compatibility of Christian faith and evolutionary science.</description>
        <content:encoded><![CDATA[<p>“All reality is iconoclastic.”<sup>1</sup> When C.S. Lewis—or ‘Jack’ as his friends called him—penned that line in 1961, he was writing about God’s proclivity for repeatedly smashing our inevitably half-baked notions about Him.  But much the same can be said for what reality does to our own cultural icons as well. And, if nothing else, Lewis himself has become a cultural icon for many American evangelicals, identified by many as the 20th century’s Christian intellectual <em>par excellence</em>.</p>

<p>With his compelling personal story of becoming England’s “most reluctant convert,” his towering intellect, and his inimitable eloquence, American evangelicals’ lionization of Lewis is certainly understandable.<sup>2</sup> But when we attempt to lionize people we often ironically end up taming them, paring their claws so that our heroes and our preconceptions can safely cohabitate in our imaginations.  But Lewis is no safer a lion than Aslan, and he will not go quietly into our tidy evangelical boxes.  To be frank, American Evangelicalism’s infatuation with Lewis is in many respects somewhat odd.  For here is a pathologically populist movement with a penchant for Big Tent Revivalism, an obsession with liturgical innovation, a deep-seated suspicion of ecclesiastical tradition, and a raw nerve about the doctrine of justification, falling head-over-heels for a tweed-jacketed, Anglo-Catholic Oxford don—a curmudgeonly liturgical traditionalist who was fuzzy on the atonement, a believer in purgatory, and, as we shall see, whose views on Scripture, Genesis, and evolution position him well outside of American Evangelicalism’s standard theological paradigms.  All of that is to say that Lewis was not “just like us”—<em>any</em> of us—and if we would do him justice, we must be prepared to be <em>surprised</em> by Jack.</p>

<p>In what follows, I would like to look at three areas relevant to faith and science discussions where Lewis’s stated views might be surprising for his American Evangelical admirers—namely, his views on Scripture generally and Genesis in particular, his views on Adam and the doctrine of the Fall, and his views on evolutionary science and the myth of ‘Evolutionism.’</p>

<h3>Reflections on the Scriptures: Lewis on the Bible, Myth, & Fact </h3>

<p>Lewis derived his theological understanding of the Bible from his reading of Scripture, his intimate knowledge of the Church Fathers and the Medieval Doctors, and also from his awareness of modern biblical scholarship.  While Lewis was regularly critical of Modernist biblical scholarship’s naturalistic dismissal of the miraculous, its pedantry, literary tin-ear, and over-eagerness to conflate Jesus’ story with the stories of pagan mythologies (he had precious little patience for Rudolf Bultmann, for instance ), he was not at all given to the knee-jerk reactionary Fundamentalism which has held so much sway in American Evangelical culture.  In fact, Lewis incorporated many of the more well-supported conclusions of modern biblical criticism into his theology of Scripture, not least critical opinions about the historicity of much of the Old Testament.  In good Anglican fashion, Lewis creatively drew upon the deep resources of the Church’s grand Tradition in order to think through the contemporary problems posed by modern critical scholarship.  Here I wish to focus on three features of Lewis’s theological conception of Scripture—his understanding of the Bible as being <strong>incarnational</strong> and <strong>sacramental</strong> in character, and <strong>Christotelic</strong> in focus—before turning to his theological reading of Genesis 1-3.<sup>4</sup></p>

<h3>Inspiration and Incarnation</h3>

<p>According to Lewis, the Bible is both a vessel of the divine Word and also a profoundly human collection of documents. In his longest, most substantive piece on Scripture, chapter XI of <em>Reflections on the Psalms</em>, Lewis frames a thoroughly incarnational understanding of the Bible:</p>

<blockquote>The human qualities of the raw materials show through.  Naïvety, error, contradiction, even (as in the cursing Psalms) wickedness are not removed.  The total result is not “the Word of God” in the sense that every passage, in itself, gives impeccable science or history.  It carries the Word of God; and we (under grace, with attention to tradition and to interpreters wiser than ourselves, and with the use of such intelligence and learning as we may have) receive that word from it not by using it as an encyclopedia or an encyclical but by steeping ourselves in its tone or temper and so learning its overall message.<sup>5</sup></blockquote>

<p>Lewis’s reference to “[the] human qualities” of the Bible’s “raw materials” is suggestive.  As Peter Enns puts it in his book <em>Inspiration & Incarnation: Evangelicals and the Problem of the Old Testament</em>, the Incarnation of the Son and the inspiration of Scripture are “analogous.”<sup>6</sup>  Lewis clearly agrees.  He goes on in the chapter to articulate a theology of Scripture precisely in incarnational terms:</p>

<blockquote>For we are taught that the Incarnation itself proceeded “not by the conversion of the godhead into flesh, but by taking of (the) manhood into God”; in it human life becomes the vehicle of Divine life.  If the Scriptures proceed not by conversion of God’s word into literature but by taking up of a literature to be the vehicle of God’s word, this is not anomalous.<sup>7</sup></blockquote>

<p>According to Lewis, the means whereby God gives us Scripture is not by faxing us transcripts of inner-Trinitarian dialogue direct from Heaven, but rather, on analogy with the Incarnation, by taking up very human literature and utilizing it to communicate His Divine life to us.  </p>

<p>“We might have expected, we may think we should have preferred, an unrefracted light giving us ultimate truth in systematic form—something we could have tabulated and memorised and relied on like the multiplication table.”<sup>8</sup>  But God has instead deigned to give us a very human book, just as He deigned to send us a fully human Savior.  Lewis makes this point most poignantly in his Introduction to J.B. Phillips’s <em>Letters to Young Churches</em> where he writes:</p>

<blockquote>The same divine humility which decreed that God should become a baby at a peasant-woman’s breast, and later an arrested field-preacher in the hands of the Roman police, decreed also that He should be preached in a vulgar, prosaic and unliterary language.  If you can stomach the one, you can stomach the other.  The Incarnation is in that sense an irreverent doctrine: Christianity, in that sense, an incurably irreverent religion.  When we expect that it should have come before the World in all the beauty that we now feel in the Authorised Version we are as wide of the mark as the Jews were in expecting that the Messiah would come as a great earthly King.<sup>9</sup></blockquote>

<p>For Lewis, God’s work in the inspiration of Scripture not only communicates but also <em>emulates</em> God’s humble, self-effacing work in the Incarnation.  If the heart of Christianity, “an incurably irreverent religion,” should be the Incarnation, “an irreverent doctrine,” then it ought to come as no surprise that that doctrine should be most fundamentally communicated via an irreverent book. </p>

<p>A corollary of Lewis’ incarnational and sacramental view of Scripture is that when it comes to studying the Scriptures we must be prepared to be surprised.  Lewis warns against “the Fundamentalist’s” procedure of attempting to frame our ideas of Scripture <em>a priori</em>, deducing parameters for what the Scriptures can and cannot be from our preconceptions about God.  Lewis thinks such an approach to be a nonstarter:</p>

<blockquote>[There] is one argument which we should beware of using…: God must have done what is best, this is best, therefore God has done this.  For we are mortals and do not know what is best for us, and it is dangerous to prescribe what God must have done–especially when we cannot, for the life of us, see that He has after all done it.<sup>10</sup></blockquote>

<p>Instead, says Lewis, we should take a humble, a posteriori approach, looking and seeing just what kind of book it is that God has actually given us before making grand doctrinal declarations.  “To a human mind,” Lewis recognizes, an incarnational Bible “seems, no doubt, an untidy and leaky vehicle.”<sup>11</sup>  But it appears that this is what God has given us, and we must trust that God knows what He is doing.  As Lewis says, “Since this is what God has done, this, we must conclude, was best.”<sup>12</sup></p>


<h3>Myth Became Fact</h3>
<p>For Lewis, the Word is also like the sacrament. Just as ordinary water, bread, and wine are taken up into and become conduits for and communicators of the Divine life that we so desperately need, so, also, all-too-ordinary human writings are taken up into and become conduits for and communicators of the Divine life and word.  In Lewis’s view, we must receive the Divine word by approaching Scripture in a sacramental manner.  We “receive that word,” as Lewis says, again, “not by using [Scripture] as an encyclopedia or an encyclical but by steeping ourselves in its tone or temper and so learning its overall message.”<sup>13</sup> For Lewis, at least when it comes to the Old Testament, receiving the Word means more than simply paying critical attention to the surface meaning of the text, the <em>sensus literalis</em>.  Instead, we must press beyond the surface to the <em>sensus plenior</em>, to the “second sense” of the Old Testament, namely, Christ Himself.  “It is Christ Himself, not the Bible, who is the true word of God,” Lewis once wrote in a private letter.  “The Bible, read in the right spirit and with the guidance of good teachers, will bring us to Him.”<sup>14</sup> While such Christological <em>sensus plenior</em> interpretation may have fallen out of favor with many Protestants (to say nothing of thoroughgoing Modernist historical-critics), Lewis believes that “[we] are committed to it in principle by Our Lord Himself.”<sup>15</sup> Citing Jesus’ words to His disciples on the road to Emmaus, Lewis argues that Christ “accepted—indeed He claimed to be—the second meaning of Scripture.”  Citing a litany of Dominical sayings and New Testament texts, Lewis is clear that Christ is mysteriously the true spiritual center, climax, coherence, sum, and substance of the Old Testament Scriptures.<sup>16</sup></p>

<p>Lewis stands in good company in thinking along these lines.  The “good teachers” from which Lewis learned this hermeneutic are undoubtedly Aquinas, Bernard of Clairveaux, Augustine, Origen, and Irenaeus, not to mention the Apostles and Christ Himself.  In short, Lewis is standing within the mainstream tradition of pre-Reformation theological interpretation.  But Lewis is not simply striking a traditionalist posture.  Like a scribe trained for the Kingdom, he is prepared to bring forth treasures new and old.  By positioning himself within the grand tradition of pre-modern theological interpretation, Lewis frees himself to follow his highly-attuned modern literary-critical instincts regarding the historicity of much of the Old Testament while simultaneously upholding both a robust belief in the historicity of the Incarnation and a vital theological hermeneutic.    He writes:</p>

<blockquote>The earliest stratum of the Old Testament contains many truths in a form which I take to be legendary, or even mythical—hanging in the clouds, but gradually the truth condenses, becomes more and more historical.  From things like Noah’s Ark or the sun standing still upon Ajalon, you come down to the court memoirs of King David.  Finally you reach the New Testament and history reigns supreme, and the Truth is incarnate.  And “incarnate” here is more than a metaphor.  It is not an accidental resemblance that what, from the point of view of being, is stated in the form “God became Man,” should involve, from the point of view of human knowledge, the statement “Myth became Fact.”<sup>17</sup></blockquote>

<p>He sets up the above paragraph by saying, “[The Christian story] is like watching something come gradually into focus; first it hangs in the clouds of myth and ritual, vast and vague, then it condenses, grows hard and in a sense small, as a historical event in first century Palestine.”<sup>18</sup> Apart from the Incarnation, then, much of the Old Testament would be but “myth,” “ritual,” and “legend.”  These elements of the Old Testament only become tangible historical “Fact,” for Lewis, in the person and work of Christ.</p><br></br>

<p class="intro">Next time, Williams looks at how this understanding of Scripture framed Lewis' reading of Genesis 1-3.</p>


<h3>Note</h3>
<p class="date">1. C.S. Lewis, <em>A Grief Observed</em>, (San Francisco: Harper Collins, 2001), 66<br />
2. See Smietana, Bob, “C.S. Lewis Superstar: How a reserved British intellectual with a checkered pedigree became a rockstar for evangelicals,” <a href="http://www.christianitytoday.com/ct/2005/december/9.28.html">http://www.christianitytoday.com/ct/2005/december/9.28.html</a><br />
3. “Through what strange process has this learned German gone in order to make himself blind to what all men except him see?,” wrote Lewis in “Modern Theology and Biblical Criticism,” in Walter Hooper, ed., <em>Christian Reflections</em> (Grand Rapids: Eerdmans, 1995), 156<br />
4. I owe the word “christotelic” to my teachers at Westminster.  See especially the discussion in Peter Enns’ <em>Inspiration and Incarnation: Evangelicals and the Problem of the Old Testament</em>, (Grand Rapids: Baker Academic, 2005)<br />
5. Lewis, <em>Reflections on the Psalms</em>, (San Diego: Harcourt Inc., 1986), 111-12<br />
6. See note xii above.<br />
7. Lewis, <em>Reflections on the Psalms</em>, 116<br />
8. Ibid, 112<br />
9. Lewis, “Modern Translations,” in <em>God in the Dock</em>, (Grand Rapids: Eerdmans, 1970), 230<br />
10. Lewis, <em>Reflections on the Psalms</em>, 112<br />
11. Ibid<br />
12. Ibid, 113<br />
13. Ibid, 112<br />
14. Lewis in a letter, 8 November, 1952, in W.H. Lewis, ed., <em>Letters of C.S. Lewis</em>, (New York: Harcourt Brace Jovanovich, 1966), 247 cited in Martindale and Root, <em>The Quotable Lewis</em>, 72<br />
15. Lewis, <em>Reflections on the Psalms</em>, 117<br />
16. Ibid, 117-19<br />
17. Lewis, “Is Theology Poetry?,” in <em>The Weight of Glory and Other Essays</em>, (New York: Harper Collins, 2001), 129<br />
18. Ibid</p>

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        <pubDate>Thu, 13 Dec 12 04:00:31 -0800</pubDate>
        <dc:creator>David Williams</dc:creator>
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        <title>Surveying George Murphy&apos;s Theology of the Cross</title>
        <link>http://biologos.org/blog/surveying&#45;george&#45;murphys&#45;theology&#45;of&#45;the&#45;cross?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/surveying&#45;george&#45;murphys&#45;theology&#45;of&#45;the&#45;cross?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>If God himself is willing to die, particularly in such a gruesome way, then perhaps we should at least consider the possibility of God allowing the death of other creatures, too. But would this really be compatible with what we know of God through Scripture?</description>
        <content:encoded><![CDATA[<p style="margin: 0px 30px 0px 30px;"><em>Truly, I say to you, unless a grain of wheat falls into the earth and dies, it remains alone; but if it dies, it bears much fruit</em>. —John 12:24</p>

<h3>Introduction</h3>

<p>One of the reasons that some of us are hesitant to accept evolutionary creation is that it seems to make God responsible for the suffering and death of innumerable creatures over millions of years—before humans ever existed or sinned against their creator.  Since we believe in and worship a God who is loving, benevolent, and all-powerful, it sounds quite implausible that our God would have created a world like that; therefore, any scientific evidence for evolution <em>must</em> be incorrect.</p>

<p>Other people look at the scientific evidence for evolution and find a compelling case that it has taken place during our earth's history.  On this basis they may conclude that if evolution is true, then the belief in an all-powerful, perfectly good God must be false!</p>

<p>The trouble with both of these views is that they tend to invoke a completely abstract, philosophical god, not the living God of the Bible—the God who became a human being, experienced unimaginable suffering, and died in a grotesque and humiliating public display.  The death of Jesus completely defied the expectations (and common sense) of his followers, as well as the expectations of any “rational” understanding of the way the Creator of the universe should act in the world.  On the cross, in the person of Jesus, God took upon himself far more suffering than any creature has ever experienced.</p>

<p>If God himself is willing to die, particularly in such a gruesome way, then perhaps we should at least consider the possibility of God allowing the death of other creatures, too.  But would this really be compatible with what we know of God through Scripture?  In this essay, we will explore this quandary through a “theology of the cross”, a concept articulated by pastor George Murphy in his book <em>Cosmos in the Light of the Cross</em>.<sup>1</sup> </p>

<h3>Theology of the cross</h3>

<p>Before we jump into the theological problems associated with evolution, let’s take a look at how we understand Christian theology itself.  For the reformer Martin Luther, any theology (or science) that tries to reach knowledge of God apart from the cross is bad theology.<sup>2</sup>  Instead, Luther pointed to a <em>theologia crucis</em>, in which the true God is seen first and foremost “through suffering and the cross”. To make his point even clearer, Luther insisted that “the CROSS alone is our theology”.<sup>3</sup>   It is the lens through which we view <em>everything</em>.</p>

<p>Of course Martin Luther, having lived in the 16th century, was not aware of the vast history of life on our planet (or any other aspect of modern science, for that matter), but George Murphy draws from Luther’s teachings the foundation that all human knowledge begins with the Word made flesh and crucified.<sup>4</sup>   With the cross of Christ as the ultimate framework through which we view reality, we are bound to view the processes of nature quite differently.  As Murphy explains it,</p>

<blockquote>A theology of the cross is an explication of belief in a God who becomes a participant in the history of the universe and thereby shares in the suffering, loss, and death that are part of worldly experience.<sup>5</sup></blockquote>

<p>God does not sit idly by and watch unaffected as his creatures suffer, but neither does he swoop in and make everything completely effortless and easy.  Instead he chose another way, the crucifixion of Jesus—certainly not the approach that we would have preferred! The apostle Peter went so far as to try to talk Jesus out of it, but he was met with a stern rebuke (Matthew 16:21-23).</p>

As humans, we are inclined to recoil in horror at the idea of God being closely associated with the death.  Yet in the crucifixion we are forced to think of death and God together.  Jesus himself did not draw back from immense pain and suffering, but instead works <em>in</em> it and <em>through</em> it to accomplish his plans. In the cross we learn who God is, the One who brings new life from death (and ultimately conquers death completely).<sup>6</sup> 

<h3>Why is evolution so disconcerting to Christians?</h3>

<p>The problem of suffering throughout all of human history is troubling enough for us to reconcile with a loving, personal God.  But in addition to that, the discovery of vast numbers of fossils reveals that death has taken place on a far greater scale than we had ever imagined.  Both the wide variety of extinct creatures and their sheer numbers is quite staggering, and it raises questions about our Creator:</p>

<blockquote>The picture of a God who is immune from suffering and death but who forces organisms through millions of generations and extinction is disturbing to those who believe in a God of love.<sup>7</sup></blockquote>

<p>The mass extinction of life on earth was already well established by the early 19th century—decades before Darwin’s research—and extinction can be empirically verified independent of any theory of evolution.<sup>8</sup>   The fact that the earth’s crust is a veritable graveyard of long-lost creatures is deeply troubling, and as late as the 1790’s, distinguished intellectuals such as Thomas Jefferson denied the very possibility of extinction.<sup>9</sup></p>

<p>But in addition to the reality of species extinction, the theory of evolution by natural selection proposes that new species also arise in an environment containing widespread pain and death.  Both the creatures that are now living and those that are gone are tainted by an “acrid smell of death”.<sup>10</sup>  It makes us wonder, if our Creator is not the God of the dead, but of the living (Mk. 12:27), where is God’s presence in the evolutionary picture?</p>

<p>In all honesty, creation through evolution is not what we would <em>expect</em> from God, but Scripture is full of examples in which God acts in unexpected ways.  After all, God’s choosing to undergo an agonizing death on a cross is not what we would expect from the all-powerful Creator of the universe, either.  In both cases, new life comes about through pain, suffering, and death.  As George Murphy puts it,
</p>

<blockquote>A priori ideas about God have to be overcome, and God's character has to be learned from God's self-revelation.<sup>11</sup></blockquote>

<p>God’s fullest self-expression is in Jesus Christ himself, one who is intimately familiar with and personally endured creaturely pain and death.  The theology of the cross reveals that God's self-revelation takes place in situations of suffering, loss, and apparent hopelessness, much like situations that occur through natural selection.<sup>12</sup></p>

<h3>The crucifixion is disconcerting too</h3>

<p>Not only is creation through evolution an unexpected and unsettling process, but so is the crucifixion of Jesus!  Killing someone by hanging them on a cross is an unbearably painful, prolonged, humiliating form of death. It was such a horrific type of public execution that it wasn't until after the Roman Empire stopped the practice of crucifixion—and people no longer witnessed it personally—did the cross become a visual object of devotion.<sup>13</sup> Our culture is sufficiently removed from crucifixion that we are desensitized to its original significance, but to connect it to our current context, imagine the reaction you would get by wearing jewelry designed to look like an electric chair.<sup>14</sup></p>

<p>Once we are more attuned to the brutality of crucifixion, it seems all the more striking that the cross is the sign of God’s work, what George Murphy calls “the trademark of God”.<sup>15</sup>   The suffering and death of Jesus is featured prominently in the Gospels, but the crucifixion-resurrection pattern is strongly resonant within the Old Testament, too.  Israel suffered and toiled as slaves in Egypt for centuries before they were rescued in the Exodus, bringing life to a people who were spiritually dead.  Centuries later, the nation of Israel would experience death again when the Babylonians destroyed the Davidic monarchy, burned their Temple, killed their people, and sent many into exile.<sup>16</sup>  Neither Israel (God’s chosen people) nor Jesus (God’s own son) were spared from death and suffering; rather, suffering seems to have been the way in which God re-forms and renews humanity to fully bear His own image.</p>

<h3>Redemption extends to all of creation</h3>

<p>Fortunately, God’s story does not end with death.  God gives new life after his creatures have been subjected to terrible circumstances.  Redemption was promised to Israel itself—Ezekiel’s vision of the valley of dry bones describes how God would renew His chosen people (Ezek 37:1-14).  Later, the astonishing resurrection of Jesus made salvation possible not only for Jews, but for all people in Christ (Gal 3:26-29).  Ultimately, the New Testament makes it clear that God’s renewal will encompass the entire Creation:</p>

<blockquote>For God was pleased to have all his fullness dwell in him, and through him <strong>to reconcile to himself all things, whether things on earth or things in heaven</strong>, by making peace through his blood, shed on the cross. (Colossians 1:19-20)</blockquote>  

<blockquote>With all wisdom and understanding, he made known to us the mystery of his will according to his good pleasure, which he purposed in Christ, to be put into effect when the times reach their fulfillment—<strong>to bring unity to all things in heaven and on earth</strong> under Christ. (Ephesians 1:8-10)</blockquote>

<p>Christians are accustomed to thinking of the death of Christ in regard to humans, but our culture rarely acknowledges God plan for the redemption of His entire creation.  This is partly attributable to the fact that discussions of creation and origins are often separated from the topic of salvation.<sup>17</sup>   In doing so we tend to marginalize Jesus as we argue about Genesis.  Rather than fall into this trap, if we view nature through a theology of the cross, we will see Christ as both the alpha and the omega point in discussions of life’s history and life’s future.  With this perspective, we are more apt to sense our solidarity with the rest of creation as we wait in eager anticipation of a glorious future:</p>
	
<blockquote>The creation waits in eager expectation for the children of God to be revealed. For the creation was subjected to frustration, not by its own choice, but by the will of the one who subjected it, in hope that the <strong>creation itself will be liberated from its bondage to decay and brought into the freedom and glory of the children of God</strong>. (Romans 8:19-21)</blockquote>

<h3>Conclusion</h3>

<p>As part of the Church’s conversation about the problem of natural evil, this essay is meant to be a brief introduction to a “theology of the cross”.  One can explore this concept in greater detail in Murphy’s book <em>The Cosmos in the Light of the Cross</em>.  While there is a lot more to be said, let me conclude with the following observation:  though evolution may not be compatible with <em>some</em> interpretations of Christianity, <strong>evolutionary creation is certainly compatible with the crucified Christ and the theology of the cross</strong>.  In the person of Jesus, God suffers with the world and ultimately redeems it.  As George Murphy puts in, “The world's pains are God's stigmata.”<sup>18</sup></p>

<h3>Explore this Topic Further</h3>

<ul><li>Miller, Keith. <a href="http://biologos.org/blog/series/death-and-pain-in-the-created-order">“And God saw that it was good”: Death and Pain in the Created Order</a>. BioLogos series</li>

<li>Murphy, George L. <em>The Cosmos in the Light of the Cross</em>. Harrisburg, PA: Trinity Press, 2003.</li>

<li>Murphy, George L. “Cross, Evolution, and Theodicy: Telling It Like It Is”. In <em>The Evolution of Evil</em>. Edited by G. Bennett, M.J. Hewlett, T. Peters, and R.J. Russell. Göttingen: Vandenhoeck & Ruprecht, 2008.</li>

<li>Southgate, Christopher. <em>The Groaning of Creation: God, Evolution, and the Problem of Evil</em>. Louisville, KY: Westminister John Knox Press, 2008.</li></ul>

<h3>Notes</h3>
<p class="date">1.  Murphy, George L. <em>The Cosmos in the Light of the Cross</em>.  Harrisburg, PA: Trinity Press, 2003.<br />
2.  Murphy, p34<br />
3.  “CRUX Sola Est Nostra Theologia,” in <em>D. Martin Luthers Werke, Kritische Gesammtausgabe</em> (Weimar: Hermann Boehlau, 1892), 5:172.  The captitalization is in the original.  Cited in Murphy, p26.<br />
4.  Murphy, p108<br />
5.  Murphy, p4<br />
6.  Murphy, p43<br />
7.  Murphy, p3<br />
8.  Some Christians ascribe animal death to some combination of Adam’s fall and Noah’s flood, but this does not resolve the problem that the animals are still suffering and dying through no fault of their own.  See Keith Miller’s BioLogos series <a href="http://biologos.org/blog/series/death-and-pain-in-the-created-order">Death and Pain in the Created Order</a> for the limitations inherent in a fall-based theodicy.<br />
9.  Rudwick, Martin. <em>The meaning of fossils: Episodes in the history of paleontology</em>. Chicago, University of Chicago Press, 1985.<br />
10.  See Jeff Schloss’ BioLogos essay <a href="http://biologos.org/blog/series/southern-baptist-voices-evolution-and-death-series">Evolution, Creation, and the Sting of Death</a><br />
11.  Murphy, p63<br />
12.  Murphy, p122<br />
13.  Murphy, p27<br />
14.  This example is drawn from an evangelical outreach event held by a Christian student group in Innsbruck, Austria.  On campus one day, they started conversations with their classmates by asking the question, “Would you wear an electric chair on your neck?”<br />
15.  Murphy, George L.  <em>The Trademark of God: A Christian Course in Creation, Evolution, and Salvation</em>. Wilton, Conn.: Morehouse-Barlow, 1986.<br />
16.  Murphy, <em>Cosmos in the Light of the Cross</em>, p 31-32.<br />
17.  Murphy, p35<br />
18.  Murphy, p87</p>

]]></content:encoded>
        <pubDate>Tue, 04 Dec 12 04:00:47 -0800</pubDate>
        <dc:creator>Thomas Burnett</dc:creator>
        <!--<dc:date>Dec 04, 2012 04:00</dc:date>-->
      </item>
            <item>
        <title>Series: Behe, Lenski and the “Edge” of Evolution</title>
        <link>http://biologos.org/blog/series/behe&#45;lenski&#45;and&#45;the&#45;edge&#45;of&#45;evolution?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/behe&#45;lenski&#45;and&#45;the&#45;edge&#45;of&#45;evolution?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In this series, we reexamine the claim made by Intelligent Design proponent Michael Behe to have found a limit to “Darwinian” evolution in light of recent results from the laboratory of Richard Lenski.</description>
        <content:encoded><![CDATA[<p>In previous posts in this <a href="http://biologos.org/blog/series/behe-lenski-and-the-edge-of-evolution">series</a>, we evaluated Behe’s claimed “edge” for what evolution can (and allegedly cannot) accomplish by examining the step-by-step path that bacteria in the Long Term Evolution Experiment (LTEE) took to arrive at a mechanism for utilizing citrate under aerobic conditions. In this post, we look at the implications of these results for another of Behe’s related ideas: that of irreducible complexity.</p>
 
<h3>Behe and IC</h3>

<p>Since we have previously explored Behe’s idea of irreducible complexity in an entire <a href="http://biologos.org/blog/series/understanding-evolution-the-evolutionary-origins-of-irreducible-complexity">series</a>, we will not revisit it here in great detail. It is important, however, to reemphasize how Behe defines irreducible complexity (IC). As we noted in the first part of that series, Behe frames his ideas on IC as a counter to Darwin’s ideas of gradualism.</p>

<p>For Behe, the argument for IC is a critique of gradual evolutionary processes, of the kind that Darwin saw as necessary for his theory to hold. When Behe introduces and defines IC in his book <em>Darwin’s Black Box</em>, he has a key quote from Darwin on gradualism explicitly in view:</p>

<blockquote>Darwin knew that his theory of gradual evolution by natural selection carried a heavy burden: "If it could be demonstrated that any complex organ existed which could not possibly have been formed by numerous, successive, slight modifications, my theory would absolutely break down."<br></br>

It is safe to say the most of the scientific skepticism about Darwinism in the past century has centered on this requirement… critics of Darwin have suspected that his criterion of failure had been met. But how can we be confident? What type of biological system could not be formed by “numerous, successive, slight modifications”? <br></br>

Well, for starters, a system that is irreducibly complex. By irreducibly complex I mean a single system composed of several well-matched, interacting parts that contribute to the basic function, wherein the removal of any one of the parts causes the system to effectively cease functioning. An irreducibly complex system cannot be produced directly (that is, by continuously improving the initial function, which continues to work by the same mechanism) by slight, successive modifications of a precursor system, because any precursor to an irreducibly complex system that is missing a part is by definition nonfunctional. An irreducibly complex biological system, if there is such a thing, would be a powerful challenge to Darwinian evolution.<br></br>(<em>Darwin’s Black Box</em>, p. 39) </blockquote>

<p>The definition of an IC system is thus straightforward: it is a matched group of components, where all the components are necessary for the function of the system. The necessity of each component can be demonstrated by attempting to remove it – if the system no longer works if even one component is removed, it is by definition IC.</p>


<h3>Behe and exaptation</h3> 
 
<p>The standard response to Behe’s argument from IC is to discuss the evolutionary concept of exaptation: that new systems and functions are cobbled together from components that have functional roles in other systems already present in the cell. Behe discusses, and ultimately dismisses this idea in <em>Darwin’s Black Box</em> as follows: </p>

<blockquote>In Chapter 2 I noted that one couldn’t take specialized parts of other complex systems (such as the spring from a grandfather clock) and use them directly as specialized parts of a second irreducible system (like a mousetrap) unless the parts were first extensively modified. Analogous parts playing roles in other systems cannot relieve the irreducible complexity of a new system; the focus simply shifts from “making” the components to “modifying” them. In either case, there is no new function unless an intelligent agent guides the setup.
</blockquote>

<p>So for Behe, two points are clear: parts selected for function in one system cannot be exapted for use in other systems since they would require too many modifications; and the emergence of a new function is the indication that an intelligent agent is guiding the process. </p>

<p>Behe has <a href="http://www.evolutionnews.org/2012/11/rose-colored_gl066361.html">responded</a> to my previous posts to claim that the tandem duplication event that brought about the Cit+ actualization event should not be considered a gain-of-FCT mutation under his criteria:</p> 

<blockquote>The gene duplication which brought an oxygen-tolerant promoter near to the citT gene did not make any new functional element. Rather, it simply duplicated existing features. The two FCTs comprising the oxygen tolerant citrate transporter locus -- the promoter and the gene -- were functional before the duplication and functional after. I had written in my review that one type of mutation that could be categorized as a gain-of-FCT was gene duplication with subsequent sequence modification, to allow the gene to specialize in some task. Venema thinks the mutation observed by Lenski is such an event. He has overlooked the fact that there was no subsequent sequence modification; a segment of DNA simply tandemly duplicated, bringing together two pre-existing FCTs.</blockquote>

<p>As an aside, quibbling over whether this mutation constitutes a “genuine gain-of-FCT” mutation is not my purpose here, since the definition is Behe’s to define, and I am not aware of anyone else in the scientific literature who uses Behe’s definitions.  That said, I consider it passing strange to claim that a series of events that produced a gene that has a new sequence and functional properties distinct from either of its component parts does not constitute the production of a new “functional coded element.” If nothing else, it is a functional coded element that has not previously existed, cobbled together from parts of other functional coded elements, displaying new, adaptive properties. If according to Behe’s definition that’s not “new” or a “gain” then I guess it’s not, but that seems to me to torture the words “new” and “gain” beyond recognition. But I digress.</p>

<p>The important point for our purposes, however, lies elsewhere. Note carefully how Behe describes the Cit+ actualization event. By dividing the new aerobic citrate transporter gene into two previously existing FCTs, Behe is describing an exaptation event. The one FCT (the aerobic promoter) starts off as a necessary component of a gene transcribed when oxygen is present. As such it is under selection for that function, which has nothing to do with expressing a citrate transporter. The second FCT (the citrate transporter amino acid coding sequence) is under selection to be a citrate transporter, which has nothing to do with the function of the gene the promoter comes from. The Cit+ actualization event, then, exapts these two FCTs by placing them together to create a new function (which Behe does not mention). </p>

<p>And here’s the kicker: the new system (expression of the citrate transporter when oxygen is present) requires both FCTs in order to work. It has become a system of “well matched, interacting parts that contribute to the basic function” (i.e. transporting citrate in the presence of oxygen) “wherein the removal of any one of the parts causes the system to effectively cease functioning.” </p>

<p>In other words, it is a new IC system – a small and relatively simple system, yes, but nonetheless IC. Now, I’m fairly sure that Behe would not define this system as IC, since the documentation of an IC system evolving would seriously undermine his thesis. I am interested, however, in how he will handle this development, on two fronts. First, he would need to explain specifically why two exapted FCTs that are required together for a basic function does not constitute an IC system (if indeed he wishes to preserve his definition). Secondly, given that he allows for exaptation in this case, he needs to explain how exaptation is not a threat to IC in general. In <em>Darwin’s Black Box</em> he disallows exaptation altogether, but that option is no longer on the table. </p>

<p>In the next post in this series, we’ll continue to explore the evidence for exaptation  as a means to build new FCTs, and go on to examine the implications of this evidence for Douglas Axe’s proposed limit to evolutionary mechanisms.</p> 

<h3>For further reading:</h3>
 
<p>Blount, Z.D., Barrick, J.E., Davidson, C.J. and Lenski, R.E. (2012). Genomic analysis of a key innovation in an experimental Escherichia coli population. <em>Nature</em> 489; 513- 518.</p> 
<p>Michael J. Behe, <em>Darwin’s Black Box: The Search for the Limits of Darwinism</em> (New York: Free Press, 2006).</p>
<p>Michael J. Behe, <em>The Edge of Evolution: The Search for the Limits of Darwinism</em> (New York: Free Press, 2007).</p>
<p>Michael J. Behe (2010). Experimental evolution, loss-of-function mutations, and “The first rule of adaptive evolution”. <em>The Quarterly Review of Biology</em> 85(4); 419-445. </p>]]></content:encoded>
        <pubDate>Thu, 29 Nov 12 08:04:11 -0800</pubDate>
        <dc:creator>Dennis Venema</dc:creator>
        <!--<dc:date>Nov 29, 2012 08:04</dc:date>-->
      </item>
            <item>
        <title>Series: Genesis Through Ancient Eyes</title>
        <link>http://biologos.org/blog/series/genesis&#45;through&#45;ancient&#45;eyes?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/genesis&#45;through&#45;ancient&#45;eyes?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In this talk, originally delivered at the BioLogos President&apos;s Circle meeting in October 2012, Dr. John Walton discusses the origin stories of Genesis 1&#45;3, and why their focus on function and archetypes mean there is no Biblical narrative of material origins.</description>
        <content:encoded><![CDATA[<p>In the first segment of his talk, “Genesis Through Ancient Eyes”, Dr. John Walton discusses the authority of Scripture and how we should both honor and understand the text. According to Walton, we must remember that Scripture is “for us”, but that it was not written “to us”. He briefly highlights the ancient cosmology of both Egypt and Isreal and implores us to see the text of the Bible the way the Ancient Israelites would have seen it.</p>]]></content:encoded>
        <pubDate>Thu, 18 Oct 12 08:00:48 -0700</pubDate>
        <dc:creator>John Walton</dc:creator>
        <!--<dc:date>Oct 18, 2012 08:00</dc:date>-->
      </item>
            <item>
        <title>Series: Pre&#45;Modern Readings on Genesis 1</title>
        <link>http://biologos.org/blog/series/pre&#45;modern&#45;readings&#45;on&#45;genesis&#45;1?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/pre&#45;modern&#45;readings&#45;on&#45;genesis&#45;1?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Many people assume that until Darwin came along, devout Christians everywhere read and understood Genesis in the same way. But Dr. Pak points out that some of the most revered figures in Christian history&#45;&#45;Origen, Augustine, Aquinas, Luther, and Calvin&#45;&#45;offered insightful but distinctive interpretations of the text that are often overlooked today. First presented at a symposium in Raleigh, NC, Dr. Pak&apos;s paper is presented here as a three part series.</description>
        <content:encoded><![CDATA[<h3>Introduction</h3>

<p>To say, “I believe in the Church” is to embrace and live into a reality that precedes us, encompasses us, and continues beyond us.   Indeed, if we are to truly be the Church in the present, I believe that it is incumbent on us to listen to those who have gone before us, and recognize that our own “here and now” is not the whole of the Christian story. Moreover, paying attention to the voices in the history of the Church can reveal to us our own contemporary blindfolds and assumptions, and might even enable us to approach Scripture with fresh eyes.</p>

<p>As a case in point, over the next three posts I’d like to walk us through a number of what I call “pre-modern” church fathers’ readings of Genesis 1 so that we might hear how Christians have read this text across the last 1600 years.  For, while exploring the history of interpretation of any biblical text can teach us several important things, the biblical account of creation in Genesis 1 is a particularly instructive case.</p>

<p>Many, many Christian readers interpreted Genesis 1 during the early, medieval and Reformation eras of the church, but my survey focuses on the accounts given by Origen, Augustine, Aquinas, Luther, and Calvin.  Every one of these church fathers held to at least two strong, shared assumptions: first and foremost, they all believed Scripture is the inspired Word of God—an infallible revelation given by God to reveal God and God’s truths for the church. I will return to this point later to show that what these readers meant by “infallible” is not necessarily the same as what many modern readers mean today, but the fathers’ firm conviction in the absolute trustworthiness of the biblical text is something contemporary evangelicals have in common with our predecessors in the faith. Secondly, they all asserted that any good reading of Scripture has the ultimate goal of <em>edifying the Church</em>. A faithful reading is performed in, with and for the Church, for the Church’s strengthening and/or repentance.</p>

<p>Beyond these two essential points about the text itself, all five of these church fathers focused upon several shared theological teachings in their readings of Genesis 1:</p>

<ul><li>First, the world is created. In other words, the world is not eternal; it has a beginning and an end.</li>
<li>Second, God created the world.</li>
<li>Third, God created the world <em>from nothing</em>. This is the Christian doctrine of creation <em>ex nihilo</em>.</li>
<li>Fourth, the Creator is also Trinity: Father, Son, and Holy Spirit.</li></ul> 

<p>The first three of these beliefs—the world is created, God created the world, and God created the world from nothing—set up a clear distinction between God the Creator and created creatures who depend upon God for their creation—that is, the supreme distinction between Creator and creature. This distinction is necessary to demonstrate that only God is God; there is no other God. There is no room for the world or anything else to claim existence outside of or beyond God. God is the beginning of all existence.
</p>

<p>Finally, the church fathers’ agreement that Genesis 1 teaches us about God’s Trinitarian nature of Father, Son, and Holy Spirit gives us a sense of the complete and self-sufficient yet still relational quality of the Creator. In sum, Origen, Augustine, Aquinas, Luther, and Calvin agreed that the account of creation in Genesis 1 tells us in some kind of literal way how the world came to exist, but equally that Gen 1 is intended to teach us these key <em>theological</em> truths.</p>

<h3>An infinite source of wisdom</h3>


<p class="caption-left"><img src="http://biologos.org/uploads/static-content/origen.jpg" alt="" height="343" width="220"  /></p>

<p>One of the key issues debated amongst these early readers of Genesis 1 was a question of methodology: <em>how</em> should one read the text? The pre-modern Church held firmly to the belief of both the divine inspiration of Scripture and Scripture as an <em>infinite</em> source of God’s wisdom, revelation and teaching. This meant that the pre-modern Church believed that there was not just one singular correct meaning of a biblical text, but that there were many possible faithful readings of any given text.</p>

<p>Such an assertion involved the belief that since God is infinite, so also is God’s Word infinite. To assume that there is only one singular correct meaning of Scripture is in essence to “box God in” or offend the absolute sovereignty of God—namely, limiting what God may teach or say through God’s own very Word. Hence, from very early on in the Church’s history, the church held that Scripture has literal and spiritual meanings. The late-2nd / early 3rd-century church father Origen, for one, was a keen proponent of the spiritual reading of Scripture. He maintained that Genesis 1 has both a literal meaning and a spiritual or allegorical meaning. He wrote, “There is certainly no question about the literal meaning, for these things are clearly said to have been created by God,” but then he continued, “but it is also profitable to relate this text in a spiritual sense.”<sup>1</sup> </p>

<p>The spiritual meaning of the text, according to Origen, is that the creation account is not simply about how the world was created, but it also sets forth the Christian’s journey in faith from infancy to maturity. Or, put another way, the days of creation are an illustration of the ethical journey of Christians toward righteousness. Thus according to Origen, for example, the separation of waters from the dry land (in verse 9) points to the call for the Christian to seek heavenly things rather than earthly things.<sup>2</sup>  Though they may be literally the creation of the sun, moon and stars, the lights in verse 14’s “Let there be lights” spiritually signify Christ and his Church—Christ who is the “light of the world” and the church who has been called to reflect this light into the world (John 8:12).<sup>3</sup>  Hence, though Origen affirmed the literal reading of this text as teaching that God created the world, the weight of his focus fell upon reading Genesis 1 as a road map for the Christian’s journey in righteousness towards becoming more Christ-like.</p>

<p class="caption-left"><img src="http://biologos.org/uploads/static-content/Augustine.jpg" alt="" height="288" width="384"  /></p>

<p>The renowned late 4th/early 5th-century church father Augustine also believed in reading Genesis both literally and spiritually, though he placed more emphasis on the literal reading than did Origen. Augustine commented on Genesis 1 several times, including <em>Against the Manichees</em> and <em>A Literal Interpretation of Genesis</em>. In the both of these accounts, his primary intention was to set forth that the world is created by God out of nothing—hence light vs. dark or good vs. evil cannot be rightly believed to be dualistic entities.  In fact, God is the only Supreme Being, and God created everything else out of nothing—not out of God’s self (which leads to pantheism or pan-entheism), nor out of something else existing alongside God (which would lead to dualism or the belief that there are two or more equal entities that can claim to be gods). All of these theological teachings were set forth to deliberately counter the heretical teachings of the Manicheans in Augustine’s day. Hence, one might argue that Augustine’s “literal” reading of Genesis was very much focused upon certain <em>theological</em> teachings of Genesis 1.<sup>4</sup></p> 

<p>But Augustine did not stop there. He also provided a number of ways in which the literal words of Genesis 1 may point to a spiritual meaning. For example, Augustine writes that the 7 days of creation represent the 7 ages of the world. Moreover, Augustine—much like Origen—also read the 7 days of creation in terms of the Christian’s spiritual journey in faith. Thus, Day 1 is the light of faith, day 2 is a time of learning and discernment; day 3 is the separation of heavenly and earthly things; day 4 is development in spiritual knowledge; day 5 involves good works; day 6 is being made in the image of God to gain mastery over carnal desires, and day 7 is a day of perpetual rest.<sup>5</sup></p>

<p>Key theologians of the early church (such as Origen and Augustine, as we’ve discussed) read Scripture with multiple senses and meanings—with a literal sense and multiple spiritual senses. However, not all fully agreed with this methodology. Though most all would certainly hold to multiple senses of Scripture, some readers insisted upon a more profound attention to the literal sense, and the use of the literal sense to help restrain or hold in check the possible spiritual readings. Such 3rd- and 4th-century Church fathers, as St. Basil the Great, John Chrysostom, St. Ambrose, and Theodore of Mopsuestia insisted upon a much more restrained literal reading of Genesis 1.<sup>6</sup></p>

<p>Yet even those who insist upon a more literal—or more historical—interpretation of Genesis 1 still contended that the primary purpose of any reading was to edify the Church, which entails setting forth the key theological teachings of Genesis 1, rather than focus on the material specifics.  Again, such teachings include that the world is created, that God create the world out of nothing, and that the creation account demonstrates the great order and harmony of creation as a testimony of the God’s glory, beauty, and goodness.<sup>7</sup></p>

<p class="caption-right"><img src="http://biologos.org/uploads/static-content/john_calvin.jpg" alt="" height="299" width="220"  /></p>

<p>More than one thousand years later, 16th-century Protestant Reformers Martin Luther and John Calvin strongly argued for a literal reading of Genesis 1 over and against an allegorical one. Luther wrote, “God’s purpose is to teach us not about allegorical creatures and an allegorical world, but about real creatures and a visible world apprehended by the senses.”<sup>8</sup>  Calvin maintained, “For to my mind this is a certain principle, that what is here treated is the visible form of the world.”<sup>9</sup></p>

<p>Yet Luther and Calvin also insisted that the central purpose of Genesis 1 is to set forth the <em>theological</em> teachings that the world is created, that God created the world out of nothing, and that creation demonstrates God’s providence, divine purpose, goodness and benevolence.<sup>10</sup>  While these historical readers do not all agree on whether Genesis 1 should be read allegorically, what becomes crystal clear is that for all of these interpreters, in one way or another, a “literal” reading of Genesis 1 retains as its focus the <em>theological</em> teachings of the text.   In our next installment, we’ll look briefly at some of the difficulties our expositors perceived in Genesis 1 when they did attempt to read it literally.</p>

<h3>Notes</h3>

<p class="date">1. Origen, <em>Homilies on Genesis</em>, 60.<br />
2. Origen, 49, 50.<br />
3. Origen, 53-55.<br />
4. Augustine, <em>Against the Manichees</em>, 57, 58 and <em>Genesi ad litteram</em>, 145-46.<br />
5. Augustine, <em>Against the Manichees</em>, 83-88, 89-90. The seven ages are the following: Day 1 = the infancy of the world that stretched from Adam to Noah; Day 2 = childhood, stretching from Noah to Abraham; Day 3 = adolescence, encompassing the biblical history from Abraham to David; Day 4 = the age of youth, from David to the Babylonian captivity; Day 5 = youth to old age, stretching from the Babylonian Exile to the first advent of Christ; Day 6 = old age, the coming of Christ until the 2nd coming; and Day 7 = on the even and including the 2nd coming of Christ.<br />
6. St. Basil the Great, <em>Hexameron</em> 9.1.<br />
7. Ibid, 7.6, 1.7-9, 1.2-4.<br />
8. LW 1:5.<br />
9. John Calvin, <em>Commentary on Genesis</em>, 79.<br />
10. LW 1:3, 4, 10, 18, 36, 39, 47, 49. Calvin, <em>Commentary on Genesis</em>, 70, 89, 80-82, 88.</p>]]></content:encoded>
        <pubDate>Thu, 11 Oct 12 07:00:30 -0700</pubDate>
        <dc:creator>Sujin Pak</dc:creator>
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        <title>Willing to be Wrong</title>
        <link>http://biologos.org/blog/willing&#45;to&#45;be&#45;wrong?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/willing&#45;to&#45;be&#45;wrong?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>The debate is often not about evidence, but about making sure that others do not transgress our interpretive boundaries and insist that we&apos;re wrong. We&apos;ve bitten from the tree of knowledge and we love its taste.</description>
        <content:encoded><![CDATA[<h3>What we know</h3>

<p>Genesis is one of my favorite books of the Bible. I read through it probably once every few months and repeatedly grind my Hebrew language skills on its opening chapters. Unlike Leviticus (at least in the opinion of <em>most</em> people I know), the Genesis narrative is exciting and adventurous. Some of our favorite stories come out of the book: Noah and the Ark, The Tower of Babel, Abraham and Isaac, Joseph and the Coat of Many Colors, and so on.</p>

<p>But no story is perhaps as infamous and well known as the creation account (or accounts) as presented in Genesis 1-2. Almost every Christian or Jew, even those less than devout, know the opening words to the tale: “In the beginning, God created the heavens and the earth.” We know that God created the earth in six days. We know Eve was taken from Adam's rib for a companion. We know that God called the general creation “good”, the special creation of man “very good” and, at the very end of it all, took a day of rest (which I'm sure most of us would call “very good.”)</p>

<p>Of course, we know all of this. Yet we challenge it (and are challenged by it), continually, when we consider the variety of interpretations of how this story intersects the world as described by science. With Genesis, are we dealing with a literal scientific account, where “day” means 24-hours; are we dealing with metaphorical “days” in which epochs or periods of time or even processes are being described; or are we readers of a creation mythology from the Ancient Near East that doesn’t have anything directly to do with material origins? Interpretations go on and on, as anyone who has spent any time at all studying the creation debate knows. By and large, however, we can probably categorize Genesis interpreters into three camps: the Young Earth Creationists, the Old Earth Creationists, and the Theistic Evolutionists.</p>

<p>Now, I have the unique benefit of falling into all of these individual camps at one point or another in my life, sometimes even mixing them up. I have made a strong transition from being a die-hard Young Earth Creationist to being convinced that the evolutionary story is, in fact, the more substantiated and evidenced position. I say this with no pride, since my own transition involved many agonizing questions, a whole lot of reading, and a significant internal spiritual battle: what I believed about when and how the earth was created would not only change the way I read Scripture, it would also change certain aspects of how I viewed the Creator. </p>

<p>While I've certainly learned a lot of information on my journey, it was not an accumulation of facts that has kept me following Christ through all the ups and downs, but Jesus himself, and the knowledge that truth is not something which the Christian should find spiritually threatening.  Nevertheless, those same ups and downs—and my internalization of each of these views on creation in turn—has provided me with one simple realization about the debate over scripture and evolution: most of us are not so committed to finding the truth about Genesis and creation as we are to sustaining and maintaining our own interpretive boundaries and the boundaries of the communities which influence us. In other words, the debate is often not so much over Genesis—or even over whether we can all follow the same God when we believe different things about how he created—it's over our own ability to be right. I know this because admitting that I was wrong was the most difficult part of my own transition.</p>

<h3>Interpretive communities</h3>

<p>While I am pretty convinced of the truth of an evolutionary portrait of reality and an ANE reading of Genesis similar to that espoused by scholars like Peter Enns or Bruce Waltke, I can still make this claim about interpretive communities because my intention is <em>not</em> to dissuade others from debating the issues involved, but to ask that we simply recognize our own limits and check them as often as possible.  This is part of following Jesus, is it not? Unfortunately, vigorous debate often deteriorates quickly into screaming matches where proponents of one position or another simply are talking heads, speaking past each other and forgetting our fellowship in Christ. We play into the same interpretive competition that the Pharisee and Sadducee scribes were well known for, each claiming to have a proper interpretation of the Scriptures, but all the while forgetting that interpretive arguments matter exceptionally little if a genuine search for God is not at the forefront.  This is certainly not to insist that the discussions cease, but rather, to insist that these discussions can only be propelled forward if individuals—of whatever stripe—step outside of their own interpretive boundaries and communities and humbly present themselves before God, seeking His truth alone. It is to insist that “system maintenance” must die along with the self, because only then can we allow Scripture to interpret itself. Unfortunately (and this is an issue that goes <em>way</em> beyond the Genesis text), too many of us are more committed to a specific model than we are committed to seeking God’s truth, whatever inconvenience to us that truth proves to be. </p>

<p>In 2006, for instance, I heard a popular and well-trained Young Earth paleontologist make the following statement: “If all the evidence turns against young earth creationism, I will still believe it because that's what the Bible says.” I followed up with him in a conversation a year later over lunch and quickly realized that I did not misunderstand his statement.  For him, the parameters of his convictions were set in concrete and the truth of the overarching story of Christianity rested on these parameters not being crossed. In his view, the Bible absolutely and fundamentally teaches a universe which came into existence 6,000-10,000 years ago; to deny that is to deny Scripture, and if evidence turned up to the contrary one <em>must</em> not alter those parameters but, instead, search (perhaps in vain) for counter-evidence or be willing to live in blind faith. For this paleontologist, confident Christianity hinged on the stability of those borders of interpretation. Transition wasn't allowed. </p>

<p>But I have heard and read statements coming out of the two other camps of thought that share this kind of certainty over interpretation, too. There is a sense of doing injustice to scripture, thereby doing an injustice to Christianity, and, thereby again, doing an injustice to God if one strays from the preferred reading. One Old Earth Creationist remarked in a popular book that an interpretation of Genesis that allows for evolution is a “contradiction in terms” and it's an unfortunate thing to “blame God for it.” Genesis, in the mind of this thinker, specifically precludes any interpretation which leads to the sort of story evolution tells. To think otherwise is to “blame” God for something which he intentionally tells us is otherwise against his nature.</p>

<p>I have equally heard some theistic evolutionists deride—in a very spiritually shallow and personally offensive way—those who do not accept an evolutionary viewpoint. As one who went through an interpretive evolution on biological evolution, I can say confidently that I believe my own transition would have been much easier both intellectually and spiritually if not for feeling as if certain theistic evolutionists accused me of intentionally lying or being mentally ignorant. It seems that all three camps are at least sometimes plagued by the issue of pride—especially in the cases of a few strong advocates. But pride is nothing less than the cement by which interpretive barriers are built, helping them become unmovable walls that protect the interpretive communities within.<sup>1</sup> </p>

<p>On the other hand, one of the great benefits of the fall of positivism (or verificationism) and the rise of postmodernism was the realization that total objectivity among individuals is a false conception. And, since individuals make up communities, neither are camps of thought above error and immune from being wrong. Yet way too many Christians continue to approach Genesis as if we can interpret it on its own terms, completely and totally, without reference to our own location in history and culture. We're still functionally positivists. But it is an illusion that we’re above the interpretive fray, and we must realize time and again that we are subjective individuals, affected by a number of factors and people. We are deeply influenced by those that speak into us, those that we trust, and those that we find credible. As W. Randolph Tate writes, </p>


<blockquote>Interpretations...must be consistent with the established interpretive framework of the interpretive community. The worldview of the interpretive community sets the parameters within which interpretations are accepted or rejected.<sup>2</sup></blockquote>

<p>The Bible takes a slightly different angle and puts it this way: “for all have sinned and fall short of the glory of God.”  In other words, we are not objective data-interpreting individuals but fallen men and women, even as followers of Jesus. </p>

<p>So it’s when groups of folks line up on either side of an issue and make their positions part of their identity that the debate over interpreting Genesis reaches a near stalemate. It's communities against communities, PhDs against PhDs, experts against experts, and—perhaps more internally—interpretive parameters against interpretive parameters. The truth is that as long as we are first and foremost committed to maintaining the community in which we are involved, there will be very little chance of us getting at the real issues and the best conclusions, much less giving an adequate witness to our God, both Creator and Redeemer.</p>


<h3>New eyes, fresh air</h3>

<p>I mentioned earlier that I spent time in all three major camps of thought on this issue. I was a hard-lined Young Earth Creationist, debating on forums and writing creationist papers in college. I argued for the existence of modern-day dinosaurs, major flood geology, and so on. I was convinced I was right, that defending the truth meant digging my heels deeper into the sand. But two questions plagued my thoughts: first, I asked whether Christianity fell to pieces if I was wrong. Second, I asked whether I was committed to Christ or, rather, to myself and my interpretations. With that as my first major paradigm shift, I eventually came to accept an Old Earth view. I sat comfortably within the Old Earth view for several years, but the Lord was still at work in me, and, once again, brought those two questions to my mind.  Back to the books I went, back to the Bible I went, and back to prayer I went.  </p>

<p>Through months of extremely difficult and heart-rending transition, I found myself considering a particular reading of Genesis that I would have regarded as unacceptable as a YEC. But then I was confronted with this even more important point about Christianity: often God finds what is unacceptable to us very acceptable to Him! That included me, personally, and I felt the warmth of God’s grace flow over me. In the wake of that change of heart, people accused me of rejecting my background, my Christian education, and my interpretive communities. And, yet—whether I was right or wrong—I knew God accepted my path towards this new reading of Creation as a genuine search for Him. My spiritual struggle—contrary to what I thought while it was happening—was not a struggle to reject bad data and exegesis, it was a struggle to reject myself. </p>

<p>While the “facts” were important, that spiritual struggle was even more so for me. What was God showing me in the midst of it all? Was thinking differently about the creation making me appreciate the Creator less, or more?  Did reading Genesis differently mean only that I had been wrong, or that it was somehow less true? What did any of this have to do with my sense of calling to love and serve God and my fellow men?   In a way, I’m still figuring this out. But I can absolutely testify that the struggle transformed every single one of these questions. Indeed, for the first time, I believe I saw God as much <em>this-worldly</em> as <em>other-worldly</em>. I saw nature as intimately intertwined with itself, still being woven together by God’s hand. I saw Scripture as a beautiful expression of God’s desire that man should participate in creation. I saw that my fellow men and my fellow Christians were all on a journey, much the way I was. And I saw myself as a flawed, stubborn, and prideful man, yet forgiven for the times I’ve pitted myself and my presuppositions about Scripture against God, its author. </p>

<p>As settled as I am now, I have not forgotten that the common ribbon which ties together all of these transitions is my commitment to keep asking questions within my own circle, too—realizing that God still has much to teach all of us.  I have learned the continuing importance of stepping outside of my camp and making sure I haven’t become merely a product of or a willing prisoner to thinking a certain way, unwilling to consider that it and I might be incorrect. I came to realize that <em>everyone</em> (including myself, of course) has stories and life experiences that become the framework in which they read Genesis 1-2.  And if I stopped pretending that I, myself, could be perfectly objective, then I also had to stop pretending that those in the community that I trusted were <em>necessarily</em> objective, themselves. </p>

<p>Ultimately, I had to be willing to be wrong and to see that my friends might be wrong, too. That’s not something that any of us are “naturally” very good at, but it is possible when we realize that the world does not depend on <em>us</em> being right, but upon Jesus being right. For me, seeking truth rather than presupposition requires that we all be able to approach the communities that have influenced us deeply, and ask not just “what” they say but “why” they say it.  We all have to guard our hearts even more than our heads.  Frequently reminding myself to walk back to the edge of my own camp—to follow Jesus’ example and withdraw to a solitary place—has shown me that there is room to breathe outside our familiar interpretive parameters.  At certain times, I have found it to be the most refreshing air I've ever tasted.</p>

<h3>Notes </h3>

<p class="date">1. Though, admittedly, the theistic evolutionists tend to have a greater sense of leeway when it comes to how the claims of Genesis 1-2 affect Christianity as a whole. It would be an odd thing to say that to <em>not</em> interpret Genesis 1-2 as an evolutionary metaphor is to reject Christianity. As far as I know, most Christian evolutionists are very much willing to acknowledge that Young and Old Earth Creationists are still within appropriate spiritual bounds, even if not scientific ones. It seems to me that if individual theistic evolutionists choose an issue about which to be rigid, it’s the Fall and the existence of Adam.<br />

2. Tate, W. Randolpy. <em>Biblical Interpretation: An Integrated Approach</em>. Peabody, MA: Hendrickson, 2008, p 222.</p>]]></content:encoded>
        <pubDate>Sat, 29 Sep 12 14:22:49 -0700</pubDate>
        <dc:creator>Randal Hardman</dc:creator>
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        <title>Series: Decoding ENCODE</title>
        <link>http://biologos.org/blog/series/decoding&#45;encode&#45;series?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/decoding&#45;encode&#45;series?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>The BioLogos Foundation explains to the findings of the Encyclopedia of DNA Elements (ENCODE) project and responds to the claims that its discoveries challenge the theory of evolution, especially regarding so&#45;called &quot;junk DNA&quot;.</description>
        <content:encoded><![CDATA[<p>In 2003, under the leadership of BioLogos founder Francis Collins, the Human Genome Project sequenced the full human genome, showing us for the first time the order of the 3.2 billion chemical “bases” that make up the rungs of DNA’s double helix structure. The project identified and mapped 23,000 genes that code for proteins, but those genes make up less than 2% of the total sequence—far fewer than originally predicted, given the complexity of humans. While many non-coding sequences were identified as having function as well, there were still vast swaths of the genome that had no obvious function. In fact, what was known about certain classes of sequences suggested that they had no functional role for humans—such as the sequences identified as either transposons or transposon fragments that make up nearly half of our genome. These sorts of sequences seemed to fit into what was popularly known as the “junk DNA” category. </p>

<p>With the complete genome sequence in hand, we knew the sequence and location of our genes, but what we didn’t know was how all those genes are regulated: how do the trillions of cells in our bodies know when to turn on or off all those genes?  How do the hundreds of distinct cell types develop and function together, when they are all running on the same DNA “operating system?”  </p>
<p>That’s where the ENCODE (short for Encyclopedia of DNA Elements) project comes in. Launched in September 2003, shortly after the announced completion of the Human Genome Project, the goal of the ENCODE project is “to build a comprehensive parts list of functional elements in the human genome, including elements that act at the protein and RNA levels, and regulatory elements that control cells and circumstances in which a gene is active.” In other words, the project seeks to understand how the genome “works.”</p>

<p>Early this month, researchers from ENCODE released more than thirty papers presenting their findings. During a <em>Science</em> magazine <a href="http://news.sciencemag.org/sciencenow/2012/09/live-chat-figuring-out-what-dna.html">online chat</a>, the project’s data coordinator, Ewan Birney, explained the outcome:</p>

<blockquote>The ENCODE project aimed to start our understanding of how the human genome works. We know that (nearly) all the information that determines a human is in the genome, as we all start off as single cell with this DNA. However, we had a patchy understanding of how it works, in particular away from protein coding genes.<br /><br />

To work out how the genome works, we used the fact there are many tiny machines (proteins and RNA - RNA is very like DNA) in each of our cells which know how to "read" parts of the genome. By monitoring where these little molecular machines are on the genome, or how parts of the DNA are copied into RNA (there are quite a few different types of RNA as well), we start to gain some insight into the genome.<br /><br />

We did many such experiments, across different cell types (eg, one cell type was very similar to a liver cell type; another was very similar to a white blood cell). This way not only can we see what is similar, we can also see differences between these cell types.<br /><br />

There is a lot more to get to know and understand here - this is definitely closer to the start than the end. But it is a substantial amount of data, and analysis, to start on this journey.</blockquote>

<p>According to the abstract of one of the <a href="http://www.nature.com/nature/journal/v489/n7414/full/nature11247.html">lead papers</a> from <em>Nature</em>, this extraordinary glut of data “enabled us to assign biochemical functions for 80% of the genome, in particular outside of the well-studied protein-coding regions.”  Only 2% of the genome codes for proteins, but 80% or more has <em>some</em> biochemical function.  As a <em>Science</em> <a href="http://www.sciencemag.org/content/337/6099/1159">news article</a> put it, these 30 papers “sound the death knell for the idea that our DNA is mostly littered with useless bases.”</p>

<p>The pro-Intelligent Design organization The Discovery Institute has heralded the discovery as the “demise of junk DNA.”  Casey Luskin writes for their <a href="http://www.evolutionnews.org/2012/09/junk_no_more_en_1064001.html">blog</a> <em>Evolution News</em>:</p>

<blockquote>Let's simply observe that it provides a stunning vindication of the prediction of intelligent design that the genome will turn out to have mass functionality for so-called "junk" DNA. ENCODE researchers use words like "surprising" or "unprecedented." They talk about of how "human DNA is a lot more active than we expected." But under an intelligent design paradigm, none of this is surprising. In fact, it is exactly what ID predicted.</blockquote>

<p>The extent to which the ENCODE project been able to identify function has been surprising—even exhilarating—though scientists have for some time been getting glimpses of the many ways in which segments of DNA can be “active.”  Even in 1970 biologists knew that some non-coding DNA had function, and by 2003 there was a large body of work demonstrating that many non-coding elements acted as promoters, enhancers, insulators, and so on. Indeed, in recent years many have come to appreciate the fact that “junk” was never really an appropriate metaphor in the first place.   Still, because sequencing of multiple genomes has shed such extraordinary light on key evolutionary mechanisms, many geneticists have focused on function primarily in terms of which regions do or do not contribute to the evolutionary fitness of their host, rather than whether they were merely "doing something" biochemically.  What the impressive ENCODE project has done is open a treasure trove of new information that can only accelerate the pace at which researchers are able to explore the incredible subtlety and complexity of DNA, and refine the very concept of “functionality.” </p>

<p>So with all this in mind, is ENCODE a stunning victory for ID, as Luskin believes? Bryan College biologist Todd Wood thinks not.  He <a href="http://toddcwood.blogspot.co.uk/2012/09/everyones-excited-about-encode.html">writes</a>, “I don't think that function equates to design, nor do I think that design requires or predicts function.  They're not the same thing… my understanding of function does not require me to hypothesize God (or an anonymous designer, if you must) as the proximal cause.”  </p>

<p>We agree.  Indeed we would go on to say that evolution and design are not mutually exclusive.  So while finding function is not sufficient to prove design, recognizing that function has arisen by way of evolution does not indicate that God was not at work.  We at BioLogos believe God providentially works out his purposes—his designs—<em>through</em> the elegant processes of evolution, not in opposition to them.</p>

<p>Amazing as the new data are, it only strengthens and enhances our evidence for evolution.  While much of the genome is “doing something” biochemically, it is still likely that the majority of the sequence is evolutionarily neutral (Senior Fellow Dennis Venema discusses the evidence for this “neutrality” in a <a href="http://biologos.org/blog/understanding-evolution-is-there-junk-in-your-genome-part-1">post</a> on our site, including a striking comparison between 29 different mammal genomes and the human genome).  In fact, another  ENCODE researcher participating in the <em>Science</em> magazine chat, John A. Stamatoyannopoulos of the University of Washington School of Medicine, thinks the findings align beautifully with evolutionary theory:
</p>

<blockquote>ENCODE's data provide a unique and powerful window through which to view evolutionary change. We can see those changes directly by lining up the genome sequences of many different organisms -- these line-ups have revealed millions of regions where all the genomes agree, indicating sequences that have been specially preserved by evolution while others have decayed away (ie freely changed their letter codes). We now see that a large proportion of these 'conserved' regions are lighted up by ENCODE annotations, indicating that they are marking spots in the genome that contain important instructions for cell function.</blockquote>

<p>We’ve discussed “junk” DNA previously, including a multi-part series by Dennis Venema, and we’ve received many emails over the past few days asking for our comments on the ENCODE findings. On Monday and Tuesday, Dr. Venema will begin to offer his own thoughts on ENCODE.</p>

<p class="intro">A special thanks goes to Darrel Falk, Mark Sprinkle, Kathryn Applegate, Dennis Venema, and Tom Burnett for their contributions to this post.</p>]]></content:encoded>
        <pubDate>Wed, 26 Sep 12 05:00:35 -0700</pubDate>
        <dc:creator>Stephen Mapes, Dennis Venema</dc:creator>
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        <title>Denisovans, Humans and the Chromosome 2 Fusion</title>
        <link>http://biologos.org/blog/denisovans&#45;humans&#45;and&#45;the&#45;chromosome&#45;2&#45;fusion?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/denisovans&#45;humans&#45;and&#45;the&#45;chromosome&#45;2&#45;fusion?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>The Denisovans, an extinct hominid group that interbred with modern humans, made the news again lately with the publication of a more detailed study of their genome. One of the many interesting findings was that the Denisovans share the same chromosome 2 fusion that modern humans have.</description>
        <content:encoded><![CDATA[<br> </br><p>The Denisovans, an extinct hominid group that interbred with modern humans, made the news again lately with the publication of a more detailed study of their genome. One of the many interesting findings was that the Denisovans share the same chromosome 2 fusion that modern humans have. In this post, I review what we know about the origins of human chromosome 2, and then discuss the new Denisovan findings and their implications. </p>

<h3>The origins of human chromosome 2: a brief review</h3>
<p>Though I have discussed the evidence for a fusion event leading to human chromosome 2 before, perhaps a brief review of the evidence is in order. The human genome is made up of 23 pairs of chromosomes (for a total of 46 chromosomes). This makes us something of an oddity among living great apes, all the rest of whom  have 24 pairs of chromosomes (for a total of 48). Given that there are many independent lines of evidence that support the conclusion that we share a common ancestor with other great apes, this poses something of a conundrum: how is it that our species arrived at this specific chromosome number? If we were to represent this “problem” on a phylogeny, or tree of relatedness, it would look something like this (not to scale):</p>

<p class="caption-center"><img src="http://biologos.org/uploads/static-content/denisovans_fig_1.jpg" alt="" height="357" width="434"  /></p>
 
<p>Our closest living relatives, chimpanzees and bonobos, both have 48 chromosomes, as do all other great apes such as gorillas and orangutans. This pattern has one of two explanations, one of which is much more likely than the other. Either the common ancestor to these species had 48 chromosomes, and there was an event that reduced that number to 46 specifically on the lineage leading to humans (option A), or the common ancestor species had 46 chromosomes, and there were independent, repeated events that increased chromosome number in all other great ape species (option B). We can compare these options by placing the required event(s) on the phylogeny (again, not to scale): </p>

<p class="caption-center"><img src="http://biologos.org/uploads/static-content/denisovans_fig_2.jpg" alt="" height="300" width="570"  /></p>
 
<p>It should be obvious that the option that requires the fewest events is the more likely one – in this case option A with an event that reduces chromosome number in the lineage leading to humans. The other option, that of repeated, independent events to increase chromosome number, remains a formal, but unlikely, possibility. Events that reduce chromosome number are not frequent occurrences, so Option A is more likely than Option B.</p>

<p>We can also find further support for Option A, because it predicts a specific type of event, namely one that reduces chromosome number. Since <em>loss</em> of a large amount of chromosomal material is almost always detrimental, we need an event that reduces chromosome number without losing information. One way for this to happen is for two chromosomes to fuse together and become one. Initially, this event would produce an individual with 47 chromosomes, where two different chromosomes get stuck together. Contrary to what is often assumed, this individual would be fertile and able to interbreed with the others in his or her population (who continue to have 48 chromosomes). In a small population, over time, two relatives who both have one copy of the fusion chromosome may mate and produce some progeny with two copies of the fused chromosome, or the first individuals with 46 chromosomes. Since either a 48-pair set or a 46-pair set is preferable for ease of cell division, this population will either eventually get rid of the fusion variant (the most likely outcome), or by chance will switch over completely to the “new” form, with everyone bearing 46 chromosome pairs. While not overly likely, this type of event is not especially rare in mammals, and we have observed this sort of thing happening within recorded human history in other species.  Some mammalian species even maintain distinct populations in the wild with differing chromosome numbers due to fusions, and these populations retain the ability to interbreed. </p>

<p>Further evidence for a fusion event in the lineage leading to modern humans comes from comparing <em>synteny</em>, or gene locations and orders on chromosomes within modern great apes – an issue we have discussed <a href="http://biologos.org/blog/signature-in-the-synteny">here</a> before.  In brief, what we see in human chromosome 2 is exactly what we would predict for a fusion event. When compared to other great apes, we see the genes on human chromosome 2 match up, in order, with two smaller ape chromosomes. We also see that sequences used at the tips of chromosomes are present at the proposed fusion site, and that human chromosome 2 has not one but two sites for the cell cytoskeleton to attach to for cell division – but that one of the sites is mutated and not functional, though it lines up precisely with the location of this site on the appropriate ape chromosome. Together, this evidence consistently supports both common ancestry for humans and great apes, and specifically that the difference we see in our chromosome numbers arose due to a single fusion event. I briefly discussed this evidence in my <a href="http://biologos.org/blog/the-sorrows-and-joys-of-teaching-evolution">last post</a> where I describe how I teach some of this material and the compelling impact it has on students exploring the evolution question for the first time. </p>

<h3>Enter the Denisovans</h3>
<p>With that as background, we are now prepared to appreciate a new finding that comes from genomics work done on the Denisovan hominids, an archaic species that is more closely related to Neanderthals than to us, but that nonetheless interbred with some anatomically modern humans as they migrated out of Africa and populated the globe. (For those not familiar with the Denisovans, or the evidence for our interbreeding with them, both Darrel Falk and I have written on this previously, <a href="http://biologos.org/blog/a-geneticists-journey">here</a> and <a href="http://biologos.org/blog/understanding-evolution-neanderthals-denisovans-and-human-speciation">here</a>). Recently, a more detailed understanding of the Denisovan genome <a href="http://www.nature.com/news/new-dna-analysis-shows-ancient-humans-interbred-with-denisovans-1.11331">was published</a>, and nested in the new information is the discovery that the Denisovans share the 46 chromosome set with the same fusion that <a href="http://johnhawks.net/weblog/reviews/denisova/denisova-chromosome-2-2012.html">we have</a>. This strongly supports the hypothesis that the fusion event predates the separation of our species. If we were to represent this on a phylogeny, we can now place this event with more accuracy than before (as before, the phylogeny is not to scale): </p>

<p class="caption-center"><img src="http://biologos.org/uploads/static-content/denisovans_fig_3.jpg" alt="" height="452" width="513"  /></p>
 
<p>Despite this new information, one obvious question remains. Did the Neanderthals also have the 46-pair set? From looking at the phylogeny above, we can see that the most likely answer is that they did, since the fact that the Denisovans had it strongly implies that the last common ancestor of humans and Neanderthals / Denisovans had it as well, and the Neanderthal-Denisovan split comes later. While the Denisovan DNA samples are of high enough quality to make this assessment, we do not yet have Neanderthal DNA of high enough quality to do the same analysis with current methods (though one additional feature of the new work on the Denisovan genome is developing more sensitive DNA sequencing techniques that may resolve this question in the future).</p>

<p>In other words, this fusion seems to be an ancient one, predating our species by several hundred thousand years. Present estimates of the last common ancestor between humans and Neanderthals / Denisovans  range at about 800,000 years ago.</p>

<h3>Implications for understanding our “becoming human”</h3>
<p>The main implication from this work is that it places the fusion event well before the advent of our species. I’ve often chatted informally with Christians about evolution, and at times some have thought that this fusion event was what “started” our species, or made our species unable to interbreed with other groups. Some have even suggested that perhaps the fusion event was what produced the first human (i.e. Adam). </p>

<p>Note that thinking this way suggests a misunderstanding of how chromosome fusions occur and what effect they have on their hosts. A fusion does not precipitate a speciation event, but rather the individual with the fusion remains a part of his or her population, and able to interbreed, even if with reduced fertility. Also, there is no necessary biological effect or change that the fusion produces on the appearance of the organism.  These misunderstandings aside, however,what this new evidence shows is that this fusion event took place long before modern humans arose at around 200,000 years ago. Indeed, the 800,000 years ago date for the last human - Denisovan common ancestor means that this is the most recent date possible for the fusion. While it is an interesting piece of our evolutionary history, it doesn’t seem to have much to do with how we came to acquire the traits that set us apart from, and ultimately outcompete, other similar species.</p> 
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        <pubDate>Thu, 06 Sep 12 13:07:21 -0700</pubDate>
        <dc:creator>Dennis Venema</dc:creator>
        <!--<dc:date>Sep 06, 2012 13:07</dc:date>-->
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