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        <title>Custom Feed &#45; The BioLogos Forum</title>
    <link>http://biologos.org/resources/find/any/Creation Care,Non&#45;Believers,Evolution &#45; Evidence/sort&#45;by&#45;Newest?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
    <description>This is a custom feed of BioLogos resources. Make a new feed at http://biologos.org/resources/find</description>
    <dc:language>en</dc:language>
    <dc:rights>Copyright 2013</dc:rights>
    <dc:date>2013-05-23T07:05:42-08:00</dc:date>    
    
    

            
            
        
      <item>
        <title>Does Resurrection Contradict Science?</title>
        <link>http://biologos.org/blog/does&#45;resurrection&#45;contradict&#45;science?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/does&#45;resurrection&#45;contradict&#45;science?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>So what then does Resurrection mean? For Benedict it represents a new dimension of reality breaking through into human experience. It is not a violation of the old; it is the manifestation of something new.</description>
        <content:encoded><![CDATA[<p>The scientific case against resurrection is pretty straightforward: once dead you stay dead -- that's just the way it works. Coming back to life after having been dead (I mean <em>really</em> dead) would constitute a violation of natural law -- a miracle -- and miracles just don't happen. Fair enough. But in his recent book on the last days of Jesus (<em>Jesus of Nazareth Holy Week: From the Entrance Into Jerusalem to the Resurrection</em>), Joseph Ratzinger (aka Pope Benedict XVI) argues that reckoning Resurrection as resuscitation of a corpse is to misunderstand its true significance. Jesus' Resurrection, he contends, was an utterly singular event, straining the very limits of human understanding:</p>

<p>"Anyone approaching the Resurrection accounts in the belief that he knows what rising from the dead means will inevitably misunderstand those accounts and will then dismiss them as meaningless" (p. 243).</p>

<p>In fact, if Jesus' Resurrection were "merely" coming back to life in any way that we might comprehend, then it would be of little significance.</p>

<p>"Now it must be acknowledged that if in Jesus' Resurrection we were dealing simply with the miracle of a resuscitated corpse, it would ultimately be of no concern to us" (p. 243).</p>

<p>So what then does Resurrection mean? For Benedict it represents a new dimension of reality breaking through into human experience. It is not a violation of the old; it is the manifestation of something new.</p>

<p>"Jesus had not returned to a normal human life in this world like Lazarus and the others whom Jesus raised from the dead. He has entered upon a different life, a new life -- he has entered the vast breadth of God himself..." (p. 244).</p>

<p>Because it is something entirely new, it cannot represent a violation of natural law as understood by science.</p>

<p>"Naturally there can be no contradiction of clear scientific data. The Resurrection accounts certainly speak of something outside our world of experience. They speak of something new, something unprecedented -- a new dimension of reality that is revealed. What already exists is not called into question. Rather we are told that there is a further dimension, beyond what was previously known. Does that contradict science? Can there really only ever be what there has always been? Can there not be something unexpected, something unimaginable, something new? If there really is a God, is he not able to create a new dimension of human existence, a new dimension of reality altogether?" (p. 246-7)</p>

<p>Thus, in this view, Resurrection (as with all true miracles) is not contrary to science, but an indicator that science does not (yet?) describe the full expanse of reality. Indeed, some may argue that science itself contains similar "indicators." The 11 (or so) dimensional universe required by some versions of string theory, the multiverse theory of the universe where ours is but one of an infinite array of universes with variable physical laws, quantum entanglements, "spooky" action at a distance, the mysterious emergence of consciousness from inorganic matter -- all push the limits of human reason and imagination, suggesting to some that reality may be far more complex than the human mind can grasp.</p>

<p>For a moment, let us entertain the possibility that Resurrection is as Benedict interprets it: not a violation of natural law but an indicator of something beyond our scientific understanding of the universe. This has interesting implications for understanding how believers and skeptics approach the issue. If Resurrection does not violate science, then science does not necessarily constitute an impediment to accepting the reality of Resurrection. If the difference between the skeptic and believer is not science, then is it just a matter of imagination? The believer imagines greater possibilities for the universe than the non-believer. While this is possible, it seems questionable. To my knowledge, no research has found differences in imaginative abilities between religious and non-religious people. Moreover, contrarian examples easily come to mind: Isaac Asimov was an atheist but hardly lacking in imagination when it came to science fiction. I tend to think that both believers and non-believers can imagine (with varying degrees of effort, I'm sure) the new possibilities implied by Resurrection.</p>

<p>Thus, if it is neither imagination nor science that prompts skepticism about Resurrection, then what is left? I suggest that it comes down to a question of authority: At what point does one allow imaginative possibilities to have authority over how one lives? To the believer, Resurrection has an authority that science fiction does not. Resurrection is not thought-provoking entertainment. It requires far more than just imagining greater possibilities for the universe. It requires a change of life, here and now. Unlike the microscopic hidden dimensions of string theory, the new dimension implied by Resurrection has "broken though" into everyday reality and demands a response -- even if that response is to actively ignore it.</p>

<p>Now, what convinces the believer that Resurrection merits such authority when other imaginative possibilities such as extraterrestrial life or time-travel do not? The answer here appears to be historical commitment. There's no record of people committing themselves to the point of martyrdom to other imaginative possibilities as they have to Resurrection. The earliest example of such commitment being found, of course, in the dramatic post-crucifixion turn-around of the Apostles. Such an astounding change of heart, followed by an unwavering commitment capable of altering human history demands a categorically unique explanation: Resurrection.</p>

<p>The believer's argument, however, remains unconvincing to the skeptic. However impressive they might be, a change of heart and steadfast commitment do not necessarily add up to a new dimension of reality. Extraordinary claims require extraordinary evidence. Fair enough. So a key question regarding the interpretation of Resurrection is this: Is the post-crucifixion history of Christianity extraordinary? Does it compel the dispassionate observer to concede that a categorically unique event could plausibly be its best explanation?</p>

<p>It ought to be upon questions such as those above that skeptics and believers respectfully engage one another, rather than the simplistic and often acrimonious sloganeering that has increasingly become the norm.</p>
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        <pubDate>Fri, 29 Mar 13 12:58:35 -0700</pubDate>
        <dc:creator>Matt J. Rossano</dc:creator>
        <!--<dc:date>Mar 29, 2013 12:58</dc:date>-->
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        <title>Evolution Basics: Darwin’s Early Observations on Biogeography</title>
        <link>http://biologos.org/blog/evolution&#45;basics&#45;darwins&#45;early&#45;observations&#45;on&#45;biogeography?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/evolution&#45;basics&#45;darwins&#45;early&#45;observations&#45;on&#45;biogeography?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>For Darwin, both of these observations (that oceanic islands lacked terrestrial mammals, and that endemic species on islands were most similar to a species on the closest mainland) had the same explanation: his hypothesis that endemic, oceanic species were the modified descendants of a colonizing species from the nearest continent.</description>
        <content:encoded><![CDATA[<p>In the previous post in this series, we discussed how scientific theories—broad, well-tested explanatory frameworks—get their start as hypotheses. As a hypothesis is used to make predictions, and those predictions are supported by experimentation, over time, scientists come to have more and more confidence in that hypothesis as a reliable guide for making predictions about the natural world. This means any current theory in science has gone through this transition, and its history can be traced.</p>

<p>Like any theory, Darwin’s idea that evolution proceeds through natural selection was once merely a hypothesis. In this post, we’ll look at some of the early observations Darwin made on <em>biogeography</em>: the study of where species are distributed across the globe. These lines of evidence would later prod him to consider the possibility that species arise through a natural process of gradual change over time, rather than being independently created in each location where they are found.</p>

<h3>The curious case of the missing mammals</h3>

<p><as a="" href="http://en.wikipedia.org/wiki/Second_voyage_of_HMS_Beagle" naturalist="" on="" the="" widely-travelled="">As a widely-travelled naturalist on the&nbsp;<a href="http://en.wikipedia.org/wiki/Second_voyage_of_HMS_Beagle">HMS <em>Beagle</em></a>,&nbsp;Darwin studied a large number of different environments and documented the species he found in each. <em>The Beagle</em>, engaged as it was in an effort to map the coastline of South America, naturally paid call to numerous island groups along the way, including islands at a great distance from a continent (i.e.<a href="http://en.wikipedia.org/wiki/Island#Oceanic_islands"><em>oceanic</em></a>&nbsp;islands). One observation that Darwin made about oceanic islands is that none that he studied had terrestrial mammals on them. Later work, after his voyage, would confirm that this was a general rule. Oceanic islands lack terrestrial mammal species, except for small species that were introduced by humans. In contrast, flying mammals (i.e. bats) were found on oceanic islands, and often these species were endemic (i.e. found nowhere else in the world but the island in question).</as></p>

<p>Darwin found these observations difficult to square with his (then) working assumption that species were independently created in (and specifically created <em>for</em>) the locations in which they are found across the globe. He discusses these observations, and the questions they raised in his mind, in two chapters entitled “Geographical Distribution” in his <a href="http://darwin-online.org.uk/content/frameset?pageseq=364&amp;itemID=F373&amp;viewtype=text"><em>Origin of Species</em></a>. After discussing the similar case that amphibians (such as frogs, newts, and so on) are also not to be found on oceanic islands, he turns his attention to the <a href="http://darwin-online.org.uk/content/frameset?pageseq=411&amp;itemID=F373&amp;viewtype=side">missing mammals</a>:</p>

<blockquote><p>Mammals offer another and similar case. I have carefully searched the oldest voyages, but have not finished my search; as yet I have not found a single instance, free from doubt, of a terrestrial mammal (excluding domesticated animals kept by the natives) inhabiting an island situated above 300 miles from a continent or great continental island.... It cannot be said, on the ordinary view of creation, that there has not been time for the creation of mammals; many volcanic islands are sufficiently ancient, as shown by the stupendous degradation which they have suffered and by their tertiary strata: there has also been time for the production of endemic species belonging to other classes; and on continents it is thought that mammals appear and disappear at a quicker rate than other and lower animals. Though terrestrial mammals do not occur on oceanic islands, aërial mammals do occur on almost every island. New Zealand possesses two bats found nowhere else in the world: Norfolk Island, the Viti Archipelago, the Bonin Islands, the Caroline and Marianne Archipelagoes, and Mauritius, all possess their peculiar bats. Why, it may be asked, has the supposed creative force produced bats and no other mammals on remote islands? On my view this question can easily be answered; for no terrestrial mammal can be transported across a wide space of sea, but bats can fly across. Bats have been seen wandering by day far over the Atlantic Ocean; and two North American species either regularly or occasionally visit Bermuda, at the distance of 600 miles from the mainland. I hear from Mr. Tomes, who has specially studied this family, that many of the same species have enormous ranges, and are found on continents and on far distant islands. Hence we have only to suppose that such wandering species have been modified through natural selection in their new homes in relation to their new position, and we can understand the presence of endemic bats on islands, with the absence of all terrestrial mammals.</p>
</blockquote>

<p>(As an aside, it’s important to note that Darwin, when he discusses the “supposed creative force” is not here arguing against the existence of God as creator in general, but rather against the “ordinary view of creation” common at the time: that God had episodically created species at specific geographical locations (what were called “centers of creation”) and that biogeographical patterns could be explained with limited dispersal from those centers. <a href="http://en.wikipedia.org/wiki/Charles_Darwin#Religious_views">Darwin himself</a>&nbsp;held to this common view at the start of his voyage on the <em>Beagle</em>, and that is the model he is attempting to refute in <em>Origin</em>, since it was a prevailing view among scientists at the time. Darwin and many of his scientific contemporaries also had no difficulty viewing natural processes as part of God’s regular action in the world, as is evident in Darwin’s <a href="http://www.darwinproject.ac.uk/darwin-and-design-article">correspondence</a>&nbsp;with American botanist Asa Gray, among others.)</p>

<p>So, for Darwin, his biogeographical observations sat at ease with his (later) ideas of colonization and subsequent species change through natural selection, but made no sense to him if one held to an independent creation model. Many oceanic islands were very old, yet no mammals had been created there. Many oceanic islands had habitat suitable for mammals (or, indeed, for amphibians, as he notes)&nbsp;yet no such species had been created for that suitable habitat.</p>

<h3>Island endemics and their continental “allied species”</h3>

<p>Darwin noticed more than the <em>absence</em> of certain species groups on oceanic islands. He also noticed an interesting feature of the species that were present: an endemic species on an oceanic island would often have strong similarities with a species on the mainland closest to the island in question. Additionally, the pairing of oceanic endemic species with continental species often seemed to override expectations that species found in similar environments would be more similar to each other. These observations prompted him to reflect further on the possible means by which these “closely allied species” arose. As Darwin would write in his <em>Origin</em> this repeated pattern made a significant impression on him, and further caused him to doubt that endemic species had been individually created for each oceanic island. His visit to the Galapagos would <a href="http://darwin-online.org.uk/content/frameset?pageseq=415&amp;itemID=F373&amp;viewtype=text">prove instrumental on this point</a>:</p>

<blockquote><p>The most striking and important fact for us in regard to the inhabitants of islands, is their affinity to those of the nearest mainland, without being actually the same species. Numerous instances could be given of this fact. I will give only one, that of the Galapagos Archipelago, situated under the equator, between 500 and 600 miles from the shores of South America. Here almost every product of the land and water bears the unmistakeable stamp of the American continent. There are twenty-six land birds, and twenty-five of these are ranked by Mr. Gould as distinct species, supposed to have been created here; yet the close affinity of most of these birds to American species in every character, in their habits, gestures, and tones of voice, was manifest. So it is with the other animals, and with nearly all the plants, as shown by Dr. Hooker in his admirable memoir on the Flora of this archipelago. The naturalist, looking at the inhabitants of these volcanic islands in the Pacific, distant several hundred miles from the continent, yet feels that he is standing on American land. Why should this be so? why should the species which are supposed to have been created in the Galapagos Archipelago, and nowhere else, bear so plain a stamp of affinity to those created in America? There is nothing in the conditions of life, in the geological nature of the islands, in their height or climate, or in the proportions in which the several classes are associated together, which resembles closely the conditions of the South American coast: in fact there is a considerable dissimilarity in all these respects. On the other hand, there is a considerable degree of resemblance in the volcanic nature of the soil, in climate, height, and size of the islands, between the Galapagos and Cape de Verde Archipelagos: but what an entire and absolute difference in their inhabitants! The inhabitants of the Cape de Verde Islands are related to those of Africa, like those of the Galapagos to America. I believe this grand fact can receive no sort of explanation on the ordinary view of independent creation; whereas on the view here maintained, it is obvious that the Galapagos Islands would be likely to receive colonists, whether by occasional means of transport or by formerly continuous land, from America; and the Cape de Verde Islands from Africa; and that such colonists would be liable to modification;—the principle of inheritance still betraying their original birthplace.</p>

<p>Many analogous facts could be given: indeed it is an almost universal rule that the endemic productions of islands are related to those of the nearest continent, or of other near islands.</p>
</blockquote>

<h3>Rethinking independent creation</h3>

<p>For Darwin, both of these observations (that oceanic islands lacked terrestrial mammals, and that endemic species on islands were most similar to a species on the closest mainland) had the same explanation: his hypothesis that endemic, oceanic species were the modified descendants of a colonizing species from the nearest continent. This also explained the lack of amphibians and terrestrial mammals (but allowed for bats) - simply based on the ability of these classes of life to disperse across large expanses of ocean. Those that could disperse and colonize oceanic islands would experience modification in the new environment, and species unable to colonize these islands would never appear. To Darwin’s thinking, this explanation was wholly more satisfactory than the assumption that God had independently created every endemic species in its place, and arbitrarily chosen that oceanic islands did not need terrestrial mammals and amphibians.</p>

<p>Despite Darwin’s musing on the biogeographical patterns he observed, and the strong suggestion these patterns made of species change over time, a mechanism for that change would take some time for him to imagine. In our next post, we’ll look at that mechanism: Darwin’s idea of natural selection, and the evidence he assembled in its support prior to publishing the <em>Origin</em>.</p>
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        <pubDate>Thu, 07 Mar 13 07:56:26 -0800</pubDate>
        <dc:creator>Dennis Venema</dc:creator>
        <!--<dc:date>Mar 07, 2013 07:56</dc:date>-->
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        <title>Evolution and Christian Faith Grantees Announced</title>
        <link>http://biologos.org/blog/evolution&#45;and&#45;christian&#45;faith&#45;grantees&#45;announced?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/evolution&#45;and&#45;christian&#45;faith&#45;grantees&#45;announced?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Congratulations to the 37 winners of the Evolution &amp; Christian Faith (ECF) grants competition! ECF is a new BioLogos program designed to support projects and network&#45;building among scholars, church leaders, and parachurch organizations.</description>
        <content:encoded><![CDATA[<p>Congratulations to the 37 winners of the Evolution &amp; Christian Faith (ECF) grants competition!&nbsp; ECF is a new BioLogos program designed to support projects and network-building among scholars, church leaders, and parachurch organizations. Each project takes a different approach to address theological and philosophical questions commonly voiced by Christians about evolutionary creation. ECF places a premium on scholarship with high “translational” potential—that which leaves the academy and makes an impact on the church. The program runs through August 2015.</p>

<p>Grantees will benefit from in-person interaction through a series of summer workshops in 2013, 2014, and 2015. These meetings will not only foster a broader knowledge base, but will build a sustained network of scholars and church leaders, both young and seasoned, who are serious about addressing the concerns of the church about evolution. Also in 2015, in connection with the third summer workshop, BioLogos will host a large conference open to scientists, scholars, and church leaders from around the world.</p>

<h3>ECF History</h3>

<p>In January 2012, BioLogos was awarded a multi-million dollar grant from the John Templeton Foundation to fund the work of scholars and church leaders on evolution and Christian faith. In spring 2012 we worked hard to get the word out. You may have seen announcements on the BioLogos website, in our newsletters, on the Books &amp; Culture, Leadership Journal, or First Things websites, on your professional society’s listserv, or perhaps on your friend’s blog.</p>

<p>The response was overwhelming: we received 225 letters of intent for a total request of $21 million—about seven times the amount we had to offer. We needed to invite the most promising applicants to submit a full proposal, but recognizing the projects with highest potential would require broad expertise. From the beginning, we envisioned that a panel of scientists, pastors, and scholars would oversee the application and review process as well as play key advisory roles throughout the project. A team of eight highly qualified individuals came on board in the early months of the project. They reviewed each proposal and together recommended that BioLogos invite 86 applicants to submit full applications.</p>

<p>The deadline for submissions was October 1, 2012. As in the previous round, the ECF panel evaluated each proposal. In addition, we asked 55 other experts to participate, so that each proposal received 3-4 scores. Criteria for the decision included significance of topic, project design, creativity and innovation, long-term impact potential, feasibility, and budget.</p>

<p>The panel then met together November 29-30, 2012, to make the final funding decisions. In the end, they recommended that BioLogos give 37 awards, ranging from $23,000 to $300,000. BioLogos staff notified applicants of their awards on December 14, 2013.</p>

<h3>The Grantees</h3>

<p>As part of our objective to create a network of scholars and leaders, we awarded grants to organizations across the U.S. and the world. Thirty of the 37 grantees are domestic; seven are international, hailing from Canada, France, Great Britain, Netherlands, and Spain.</p>

<p>Two-thirds of the accepted projects will be led by teams—some with three or more Project Leaders. We expect that the teamwork and time spent together at our summer workshops will be the start of a long-lasting network of people dedicated to helping the church think carefully about origins.</p>

<p>Applicants chose to apply under one of three program tracks: interdisciplinary scholarship (Track 1), intra-disciplinary scholarship (Track 2), and translational projects (Track 3). Track 1 projects focus on both the collaboration between individuals in different disciplines and the development of projects at the interface of different content areas. Track 2 projects focus on work done within a specific discipline. Track 3 focuses on projects that encourage Christians, especially those within more conservative traditions, to engage in meaningful and productive dialogue to reduce tensions between mainstream science and the Christian faith. The numbers of grantees in Tracks 1, 2, and 3 are 6, 8, and 23, respectively.</p>

<p>Many of the scholarly projects tackle questions about Adam and Eve, the Fall, human identity, and Original Sin—some of the most critical interpretive issues for evangelical theology.&nbsp; Some examples:&nbsp;</p>

<ul>
<li><p>Theologian Oliver Crisp of Fuller Seminary will take an analytic theology approach to ask to what extent a theological account of the origin of human sin depends upon the evolution of modern humans from one and only one ancestral pair—especially if that pair does not appear to correspond to what we would think of as modern human beings.&nbsp;</p>
</li>
<li><p>Pastor Michael Gulker and philosopher James Smith, leading a large team from The Colossian Forum, ask a related question: if humanity emerged from non-human primates—as genetic, biological, and archaeological evidence seems to suggest—then what are the implications for Christian theology’s traditional account of origins, including both the origin of humanity and the origin of sin?&nbsp;</p>
</li>
<li><p>Biologist Dennis Venema of Trinity Western University and New Testament scholar Scot McKnight of Northern Seminary will write a book on the evidence for evolution and population genetics, with informed theological reflection on how these issues interact with orthodox Christianity.</p>
</li>
<li><p>Biologist David Wilcox of Eastern University will develop an updated model of human identity which reflects the complex recent scientific advances in genetics and paleoanthropology and yet is sensitive to theological concerns.&nbsp;&nbsp;</p>
</li>
</ul>

<p>These are just a few of the scholarly awards; check out the <a href="/ecf/grantees">Grantees page</a> for full descriptions of all Track 1 and Track 2 projects.</p>

<p>All projects have translational potential, but Track 3 projects are designed to meet the needs of a particular constituency within the evangelical church. These projects run the gamut from ethics to education to media production to ministry resources. &nbsp;Some examples include:</p>

<ul>
<li><p>Theologian Lee Camp of Lipscomb University will produce “The Questions in Monkey Town,” an episode of Tokens, a live variety show that features musical performances, comedic sketches, brief interpretive monologues, and dialog with authors and scholars. The episode will be performed and filmed on the site of the famous Scopes Trial in Dayton, Tennessee.</p>
</li>
<li><p>Chaplain Joshua Hayashi and Educator Diane Sweeney of the Punahou School in Hawaii will lead a team to produce multimedia curricula aimed at helping high school students connect with their biology curricula and, at the same time, deepen their Christian faith.</p>
</li>
<li><p>Physics teacher and pastor Benoît Hébert of Science et Foi Chrétienne in France will lead an international, multi-denominational team of French speaking Evangelical scientists, pastors and church leaders to produce a large number of resources on evolutionary creation.</p>
</li>
<li><p>Pastor Seung-Hwan Kim of Grace Truth Community Church, a Southern Baptist church in Cambridge, Massachusetts, will produce teaching and preaching materials about evolution for church leaders.</p>
</li>
<li><p>President Gregory Wolfe and Director of Resource Development for IMAGE will gather artists and writers of faith whose work explores the dialogue between evolutionary science and faith practice, convening a conversation between them and scientists, theologians, and church leaders in private and public conferences.</p>
</li>
</ul>

<p>Again, this is just a taste of the diversity of Track 3 projects. Read more about each project on the <a href="/ecf/grantees">Grantees page</a>. You can look forward to an incredible variety of resources coming out of the ECF program, many of which will be featured right here on the BioLogos Forum.</p>
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        <pubDate>Wed, 13 Feb 13 05:25:03 -0800</pubDate>
        <dc:creator>Kathryn Applegate</dc:creator>
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        <title>Where are the Transitional Fossils?</title>
        <link>http://biologos.org/blog/where&#45;are&#45;the&#45;transitional&#45;fossils?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/where&#45;are&#45;the&#45;transitional&#45;fossils?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>A common argument leveled against the theory of evolution is that scientists have not been able to produce transitional fossils that show the change of one species into another.  In this podcast, we address a common misconception about what transitional fossils actually are.</description>
        <content:encoded><![CDATA[<p align="center"><iframe src="http://player.vimeo.com/video/31875051?title=0&amp;byline=0&amp;portrait=0" width="570" height="428" frameborder="0" webkitAllowFullScreen allowFullScreen></iframe></p>

<p>A common argument leveled against the theory of evolution is that scientists have not been able to produce the expected transitional fossils that show the change of one species into another. If evolution were true, wouldn’t there be instances of clear intermediary species, like, for example, a species that was half whale and half hippo to show the transition between those two? In this BioLogos podcast, Kelsey Luoma addresses this misconception about what a transitional fossil actually is. Rather than a mix between two related species, transitional fossils point back to the common ancestors that modern species share. The fact is that the number of transitional species is massive and it grows with each passing year.  Given the rarity with which organisms are actually fossilized, the amazing thing is actually the completeness of the fossil record, not its incompleteness.  The transitional species story strongly supports, and certainly does not disprove, evolutionary theory. <sup>1</sup></p>

<p class="date">1. To hear the full audio clips which have been referenced go to:</p>
<ul><li><a href="http://www.youtube.com/watch?v=X6EmOQLf25s&feature=BFa&list=PLACF41F3DDBCA4565&lf=results_video&noredirect=1" target="_blank">Rational Response Debate with Kirk Cameron (from Way of the Masters)</a></li>
<li><a href="http://www.youtube.com/watch?v=FN9wyn9xVko&feature=related" target="_blank">Behind the Scenes with Dr. Neil Shubin (from Cincinnati Museum Center)</a></li>
<li><a href="http://www.youtube.com/watch?v=fVNXXLLUYFM' target="_blank">Mark Norell Publishes New Archaeopteryx Findings (from American Museum of Natural Sciences)</a></li>
<li><a href="http://www.youtube.com/watch?v=VmtDGjfMajM" target="_blank">Texas A&M Professor Discusses Findings of Autralopithecus Sediba and its Relationship to Humans (from Texas A&M University)</a></li>
<li>Intro/outro music composed by Martin Minor (<a href="http://www.looperman.com/users/profile/159051" target="_blank">Minor2Go</a>).</li> </ul> </p>

<p><strong>An audio only version of the podcast can be downloaded <a href="http://biologos.org/uploads/resources/fossil_podcast_final.mp3" target="_blank">here</a>.</strong></p>
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        <pubDate>Fri, 01 Feb 13 08:57:28 -0800</pubDate>
        <dc:creator>Kelsey Luoma</dc:creator>
        <!--<dc:date>Feb 01, 2013 08:57</dc:date>-->
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        <title>Series: Harmonizing Science, Ethics, and Praxis</title>
        <link>http://biologos.org/blog/series/harmonizing&#45;science&#45;ethics&#45;and&#45;praxis?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/harmonizing&#45;science&#45;ethics&#45;and&#45;praxis?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In this three&#45;part series, Cal DeWitt offers insights and examples of why science and ethics must work together to help us make informed, practical decisions within our society.  DeWitt’s science&#45;ethics&#45;praxis model provides a framework by which we can live more effectively as God’s stewards.</description>
        <content:encoded><![CDATA[<h3>The Science-Ethics-Praxis Triad</h3>

<p>Today, as I write, I am no longer in the desert of southern California, nor in the beech-maple forest of New Hampshire, but on a glacial drumlin in Waubesa Wetlands—a large marsh four miles south of Madison, Wisconsin. Here Ruth and I have our home, and here I study creatures whose watery habitats my neighbors and I have worked to save from eventual destruction. While my desert study site now is covered by a city where people live alone in the land—absent the desert creatures—my wetland study site remains occupied by all kinds of native plants and animals. Embracing it is the Town of Dunn, whose land stewardship plan helps people understand, serve, and maintain this and the other ecosystems. Our town stewardship plan encourages restoration of the landscape, protects agricultural lands, and strives to transmit an intergenerational heritage of secure and wholesome homes, livelihoods, and habitats for the animals, plants, and people that live here. We live largely in harmony and accord. </p>

<p>House-building on slabs poured onto desert sands first alerted me to the question of praxis, the third point on the napkin. But it was later, in my work as organizer of the Waubesa Wetlands Scientific and Agricultural Preserve, and as supervisor and later as chair of the Town of Dunn, that I came to realize that science and ethics do no earthly good unless put into practice. In serving my town, I came to apply what I had learned in the desert: praxis uninformed by science and ethics usually creates more problems than are solved.</p>

<p>“How do you put it all together?” those students in New Hampshire wanted to know. For me, it was building a framework for stewardship that simultaneously considered the questions “How does the world work?” “What is right?” and “What then must we do?” This science-ethics-praxis triad is a framework for living, for learning, for teaching, and most importantly for acting. It is a framework for stewardship.</p>

<p>In order to live and act rightly in the world, we need to know how the world works. We need to know how the systems that sustain us work, and how we interact with them. Without such knowledge we could drown in a flash flood, have our homes undercut by desert winds, cross the street in the path of an oncoming car, or get sick from consuming foods with toxic ingredients. As human beings develop more and more of the world, and as the reach of human actions extends regionally and globally, our knowledge must increase accordingly. This knowledge is not limited to what we acquire from a formal education; it also includes the knowledge we gain from family and friends, and from experience and experiment. In order to live and act rightly in the world, we need to know how the world works.</p>

<p>In order to live and act rightly in the world, we need to know what we ought to do. A century ago, this question was addressed in many colleges across America in a course for graduating seniors on moral philosophy. The purpose of this course was to convict students that they should apply their knowledge for the pursuit of good instead of pursuing self at others’ expense. At my university, this aspect of college education is expressed in a quotation from Abraham Lincoln carved in stone on a bench behind Lincoln’s statue at the top of Bascom Hill: “Let us have faith that right makes might, and in that faith, dare to do our duty.” The question “What is right?” is represented by the ethics corner of our triad. Moving directly from the Science corner to the praxis corner, or from the ethics corner to the praxis corner, proves problematic, even disastrous. Consider the result of going from knowledge of nuclear fission (science) directly to producing and dropping an atomic bomb (praxis), or moving from the belief that death is bad (ethics) to removing dead wood from forests (praxis); both are examples of these disastrous shortcuts.</p>

<p class="caption-left"><img src="http://biologos.org/uploads/static-content/DeWitt_Cover_thumb.jpg" alt="" height="270" width="200"  /></p>

<p>But knowing the science and observing the ethics of this stewardship framework does absolutely no good if it is not put into practice—placed into service. By themselves, the very best science and the most substantial ethics are no substitutes for action. We need to act appropriately and deliberately in the light of scientific and ethical knowledge. Praxis by itself, without being grounded in science and ethics, results in mere activism—activism that is unlikely to do good and that may produce harm. All three corners of the triad are essential—but not by themselves. Taken together and working interactively, they provide a framework for stewardship.</p>

<p>But will these three operate in dynamic interaction? Will they interact in ways that preserve and achieve the integrity of human life and the environment? The answer depends on what we know and understand about ourselves and the world (science), what we believe we should do (ethics), and what we in fact do, and how we respond to our successes and failures (praxis). It depends on our will, our motivation, our determination, and our dedication to strive for a harmonious world of creatures before their Creator. What might make us strive for such a world?</p>

<p class="intro">Part 3 explores the challenge of translating ideals into concrete actions.</p>
]]></content:encoded>
        <pubDate>Wed, 09 Jan 13 06:00:09 -0800</pubDate>
        <dc:creator>Calvin DeWitt</dc:creator>
        <!--<dc:date>Jan 09, 2013 06:00</dc:date>-->
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        <title>Series: To Serve and Preserve—Genesis 2 and the Human Calling</title>
        <link>http://biologos.org/blog/series/to&#45;serve&#45;and&#45;preservegenesis&#45;2&#45;and&#45;the&#45;human&#45;calling?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/to&#45;serve&#45;and&#45;preservegenesis&#45;2&#45;and&#45;the&#45;human&#45;calling?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In this series, David Buller pays careful attention to the original language and cultural context of Genesis 2, revealing that our responsibility to care for creation is a sacred task given to us by God, not merely a modern secular activity.  By taking Scripture seriously, we learn that we have a God&#45;given mandate to be diligent stewards of His creation.</description>
        <content:encoded><![CDATA[<p>The Bible provides us with several beautiful, theologically rich accounts of creation – in Genesis 1 and 2, but also in the Psalms and Job as well. If I had to pick a favorite from these passages, I think I’d choose Genesis 2, which tells the story of creation by zeroing in on the creation of humanity and a garden somewhere “in the East.” This chapter is packed with theological truths, yet we unfortunately often miss them; we may think of this chapter as less significant than Genesis 1, or merely as a setup for Genesis 3. At the same time, our curiosity about scientific matters (and blindness to symbolic language) might predispose us to skip right over the theological truths that this passage teaches. But if we approach Genesis 2 on its own terms, what might we learn from it?</p>

<p>A careful study of this chapter is important because it gives us a beautiful picture of the proper relationships we should have with God, the natural world, and each other. Numerous posts could be written on each of these relationships, but in this post I’d like to focus on how Genesis 2 describes our relationship to the rest of creation. These relationships are given deeper significance when we recognize that the garden is being described as a temple-like “sacred space,” not just an ordinary garden. There are numerous clues in the passage that this is the case. John Walton writes that the Garden/temple parallels “are givens that are simply assumed by the author and audience”<sup> 1</sup> of Genesis, but we completely miss them if we take fail to read the text the way the ancient author and audience would have.</p>

<h3>Temples and Gardens</h3>

<p>In the Ancient Near East (ANE), all sacred space was conceived of as something like a temple; it was a place where humans would serve God and experience their closest access to Him.  Thus in ANE cultures, a temple complex was seen as being the apex and a microcosm of creation and the earthly abode of the god(s). Descriptions of temples often pictured a river flowing from under the temple and flowing out through an adjacent garden, symbolizing the fertile extravagance of the divine provision. A temple garden would be no mere backyard vegetable patch, but rather an elaborate, beautifully landscaped botanical park.</p>

<p>The same temple/river picture can be seen in the description of the eschatological temple in Ezekiel (ch. 47) and Revelation (chs. 21-22, where the final temple is God Himself). Sound familiar? In Genesis 2 we also have a river flowing “from Eden [‘Abundance’] to water the garden” (v. 10).<sup>2</sup> Not only is the Garden filled with “every beautiful tree with edible fruit” (v. 9), but the area itself is rich with gold, resins, and gemstones (sometimes translated “bdellium and onyx”), the same materials later used to decorate Israel’s tabernacle, temple, and priestly garments. Furthermore, many scholars are convinced that the design of temple’s Menorah (candlestick) deliberately echoes the Garden’s Tree of Life, and some also think that the Ark of the Covenant in the temple parallels the Tree of the Knowledge of Good and Evil.<sup>3</sup></p>

<h3>Made for Sacred Service</h3>

<p>As inhabitants of this temple-garden, it comes as no surprise that Adam and Eve enjoyed a special closeness to God’s presence (Gen. 3:8 pictures God taking an evening walk through the Garden). But as inhabitants of the Garden, they had special responsibilities as well; they were told “to farm it and take care of it” (v. 15). The two Hebrew words used here have a broader range of meaning than their English translations suggest. As John Walton writes, the broader meaning of the word here translated “to farm” (particularly when used in a sacred context) “is often connected to religious service deemed as worship (e.g., Ex. 3:12) or of priestly functionaries serving in the temple precinct (e.g., Num. 3:7-10).”<sup> 4</sup></p>

<p>The usage in Genesis 2 seems to have two layers of meaning: “farm/cultivate the Garden” (since it is an agricultural space) and “serve/worship God” (since the Garden is also a sacred space). The dual meanings are as intertwined in Hebrew grammar as they are intended to be in practice. The second Hebrew word (translated “take care of”) has a deeper religious meaning as well. The word can refer to protecting farmland from external threats, but in a danger-free sacred space like the Garden, the word more generally refers to “performing duties on the [temple] grounds,” that is, to “sacred service.”<sup>5</sup></p> 
 
<p>Walton therefore translates these two Hebrew words as “serve and preserve.”  These same words appear again together several times in Numbers to describe the priest’s duties in the temple.  Because of all this, Gordon Wenham describes Adam as “perhaps…an archetypal Levite” with a “quasi-priestly” role in the garden.<sup>8</sup>  Eve was created as Adam’s companion and “helper” in his work, a word which nowhere in the OT refers to a subordinate assistant, but rather to one who is at least equal to the one being helped.<sup>9</sup></p>

<p>Genesis 2 should banish from our minds any idea that creation care is somehow “secular” work for a Christian, or that it is not even our responsibility. This was the first task given to humanity, to serve and worship God by cultivating and protecting the natural world. The centrality of our responsibility in this regard is even clearer when we back up to the beginning of the chapter. We know there was a river “flow[ing] from Eden to water the garden” (v. 10), symbolizing that “all fertility emanates from the presence of God.”<sup> 10</sup> Nonetheless there could be no cultivated plants in the garden because “there was still no human being to farm the fertile land” (v. 5). With no gardener and no rain, the ground was watered indiscriminately; a human was needed to irrigate the waters and support a garden.<sup>11</sup> Therefore, God “formed the human from the topsoil” (Hebrew wordplay equivalent to “human from the humus”) before planting the garden. God certainly could have watered it another way without needing us, but He chose not to, and the resulting collaborative picture here is a beautiful one. All provision flows from God, but He has chosen to give us an essential part in further channeling his provisions in the natural world. Far from countering God’s creative work by destroying nature, we are intended to work with Him to preserve and further it.</p>

<p>Of course, though created primarily to glorify God, the world was also made to provide us abundantly with the food and resources that we need to live (Gen. 2:16). Yet we don’t need to look far to see that we have often failed in our responsibility to properly care for creation. We live in a fallen world, and sin has fractured the intended harmony of our relationships with God, creation, and each other (as described in Genesis 3:14-24).</p>

<p>I recently heard a striking crystallization of this fallen perspective in Spencer Tracy’s narration in the opening scene of the sprawling 1962 western film “How the West Was Won.” As the camera flies over majestic Western fields and mountains, the narrator tells us that “This land has a name today, and is marked on maps. But the names and the maps all had to be won, won from nature and from primitive man.” This is the fallen perspective – advancing our human purpose on earth is done through <em>defeating</em> nature and other people (derogatively labeled “primitive,” as well) apart from God. This perspective perfectly illustrates the conflict-based relationships that sin brings about, already described for us back in the first chapters of the Bible.</p>

<p>Are we doomed, then, to live helplessly in this way? If this is just the way the world is and the way we are, shouldn’t we just accept that? Apart from Christ the answer would be “yes,” but the New Testament makes it clear that though we are still fallen, the saving work of Christ has brought about a profound change in us. As N.T. Wright makes clear in his book <em>Surprised by Hope</em>, Jesus taught (and the Resurrection vindicated) that the Kingdom of God “was and is breaking in to the present world, to earth.”<sup> 12</sup>  Christ’s Resurrection was the first act of the future new creation. If we are truly “born again” into this new reality, this new way of living, we must strive (in the Spirit’s power) to live lives of wholeness and right relationships, putting our sinful nature to death (Colossians 3). In doing so, we would be wise to include Genesis 2 as we seek to follow God’s will and God’s Kingdom, “on earth as it is in heaven” (Matt. 6:10).</p>

<p class="intro">In part 2 of this series, David describes how Genesis 1, Genesis 2, and modern scientific accounts offer complementary and mutually enriching perspectives in our understanding of God's creation.</p>

<h3>Notes</h3>
<p class="date">1.  John H. Walton, <em>Ancient Near Eastern Thought and the Old Testament: Introducing the Conceptual World of the Hebrew Bible</em> (Grand Rapids, MI: Baker Academic, 2006), 125.<br />
2.  Biblical quotations are from the Common English Bible unless otherwise noted.<br />
3.  Both symbolized divine wisdom that humans had to receive from God obediently, with the proper “fear of God” that the Old Testament wisdom literature stresses as a prerequisite. Disobediently eating the Tree’s fruit would lead to death and disobeying God would lead to expulsion from the Garden. Similarly, disobediently touching the Ark brought death (Num. 4:15, 2 Sam. 6:1-7) and disobeying God’s instruction led to Israel’s exile from their Eden, the land of Canaan.<br />
4.  John H. Walton, <em>Genesis</em> (Grand Rapids, MI: Zondervan, 2001), 172.<br />
5.  Ibid., 173.<br />
6.  Ibid., 192.<br />
7.  See Numbers 3:7-8, 8:26, 18:5-6.<br />
8.  Gordon J. Wenham, “Sanctuary Symbolism in the Garden of Eden Story,” in <em>“I Studied Inscriptions from Before the Flood”: Ancient Near Eastern, Literary and Linguistic Approaches to Genesis 1-11</em>, ed. Richard S. Hess and David Toshio Tsumura (Winona Lake, IN: Eisenbrauns, 1994), 401.<br />
9.  Walton, <em>Genesis</em>, 176.<br />
10.  Ibid., 170.<br />
11. This follows Walton’s illuminating exegesis of this passage in <em>Genesis</em>, 164-65.<br />
12.  N.T. Wright, <em>Surprised by Hope: Rethinking Heaven, the Resurrection, and the Mission of the Church</em> (New York: HarperOne, 2008), 201.</p>

]]></content:encoded>
        <pubDate>Thu, 03 Jan 13 06:00:12 -0800</pubDate>
        <dc:creator>David Buller</dc:creator>
        <!--<dc:date>Jan 03, 2013 06:00</dc:date>-->
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        <title>Introducing the BioLogos Navigator</title>
        <link>http://biologos.org/blog/introducing&#45;the&#45;biologos&#45;navigator?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/introducing&#45;the&#45;biologos&#45;navigator?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Part of BioLogos mission is to show how all things hold together in Christ—to show how a Christian worldview integrates the knowledge we have of God through the Scriptures with the knowledge we have of God through the other areas in which He reveals himself as Creator and Redeemer.</description>
        <content:encoded><![CDATA[<p>When we at BioLogos affirm that, “all things hold together in Christ,” what do we mean?  In short, we believe that there is no aspect of creation or of human experience that does not fall under the sovereignty and authority of God, and that He does not claim for himself and intend for redemption.  After all, at his resurrection, Jesus himself said, “All authority in heaven and on earth has been given to me” (Matthew 28:18). But more than just proclaiming God’s sovereignty over creation, we believe that God is revealing himself in every aspect of creation, as well—that led by the Holy Spirit, we will find pointers to God wherever we turn our gaze.  Christian knowledge, therefore, is not limited to the study of the Scriptures or of Church History, but includes the study of the natural world and of all of human culture, as well.  In fact, to fully appreciate God’s abundant grace and providence, we need to be looking to all of these domains of knowledge as domains of revelation, too. </p>

<p>Part of the BioLogos mission, then, is to show <em>how</em> all things hold together in Christ—to show how a Christian worldview integrates the knowledge we have of God through the Scriptures with the knowledge we have of God through the other areas in which he reveals himself as Creator and Redeemer.  Our website contains a wealth of Christian scholarship in a wide range of fields—from biology, to cosmology, to mathematics, to Biblical studies, to history, to theology—all demonstrating that the best contemporary science is compatible with Biblical Christian faith. But today we introduce a new tool—the BioLogos Navigator—to make these posts more accessible, and to show how they inter-relate (see sidebar on the right).  </p>

<p>Modeled on the astrolabes that early astronomers and sailors used to orient themselves under the heavens, our Navigator makes the cross of Christ the starting point by which we understand the cosmos.  Each of the four arms of the cross represents one of the domains of knowledge and experience through which God reveals himself to the world: Scripture, the Church, Nature and Culture.  These domains are not in opposition to each other, but are complementary and inter-related areas through which we can recognize God at work in the world. Linking these four domains is a network of specific topics relevant to the science and faith conversation.  Their arrangement suggests how each relates to the four domains but also to teach other.  Clicking on an individual topic tag highlights not only that topic, but other topics that are linked to it—sometimes in unexpected ways.</p>

<p>Clicking a topic tag a second time takes you to the Topic Landing page: a curated selection of the best resources on that subject from the BioLogos archives.  (The image above shows the <em><a href="http://biologos.org/navigator/Christianity+&+Science+-+Then+and+Now">Christianity & Science—Then and Now</a></em> Landing page, complete with Navigator and highlighted tags.) At the bottom of each page is a link to our Resource Finder, where you can investigate additional materials on that topic, as well. By exploring the relationships between the topics on the Navigator itself, and by delving deep into each topic via the resources presented on the landing pages, readers can focus on specific aspects of the harmony between science and Christian faith while also getting the wide view of God’s providential work in all things in the heavens and on the earth. </p>

<p>In the coming days and weeks, the BioLogos Navigator will be more fully integrated into the rest of the site, accessible directly from the Forum homepage and from the Resources dropdown list at the top of every page.  We’ll also be including features that help place each blog post on the “knowledge map” defined by the domains and topic tags.  Finally, the Topic Pages will also be periodically updated with the latest and best new materials in each topic. In the meantime, <strong>you can access the Navigator by clicking anywhere on the small image in the sidebar, above</strong>, and find a link to this post at the upper right corner of our homepage.  So take some time to explore our site with this new tool, which we think will to help orient our readers in the science and faith conversation, while always pointing to Jesus, the Christ, through whom all things were made.</p><br />]]></content:encoded>
        <pubDate>Thu, 27 Dec 12 06:19:49 -0800</pubDate>
        <dc:creator>Mark Sprinkle</dc:creator>
        <!--<dc:date>Dec 27, 2012 06:19</dc:date>-->
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        <title>Katharine Hayhoe: Evangelical Christian, Climate Scientist</title>
        <link>http://biologos.org/blog/kathryn&#45;hayhoe&#45;evangelical&#45;christians&#45;climate&#45;scientist?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/kathryn&#45;hayhoe&#45;evangelical&#45;christians&#45;climate&#45;scientist?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>As an Evangelical and a scientist, Katharine Hayhoe is already a member of a rare breed.  As a climate change researcher who is also married to an evangelical Christian pastor, she is nearly one of a kind.</description>
        <content:encoded><![CDATA[<p>As an evangelical scientist, Katharine Hayhoe is already a member of a rare breed.  As a climate change researcher who is also married to an evangelical Christian pastor, she is nearly one of a kind.  In these three videos, Hayhoe divulges her beliefs about God, climate change, and the difficulties of believing in both those things.</p>

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<p>The first video, “10 Questions with Katherine Hayhoe”, introduces the scientist in a brief and lighthearted interview.  Hayhoe is presented with 10 questions concerning her personal life and beliefs.  When asked, she explains that one thing people should know about Christianity is that having a relationship with the God of the universe is one of the most incredible experiences that a person can have. As the video unfolds, the viewer quickly begins to realize that, despite her unique profession of two seemingly incompatible beliefs, Hayhoe is a remarkably sane and “normal” individual.  Her role model, she explains, is her father-- the person who first introduced her to science and showed her that it could be “really cool”.  On a more serious note, the scientist admits that being both a scientist and a Christian can be difficult.  The most frustrating thing about her position, she says, is the amount of disinformation which is targeted at her very own Christian community.</p>
 
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<p>In the second video, “Climate Change Evangelist”, Katharine Hayhoe delves into deeper discussion of the perceived conflict between climate change and Christian faith.  She explains that admitting her identity as a Christian scientist can be uncomfortable.  Since evangelicals are the targets of much disinformation concerning science in general -- and specifically the science surrounding climate change -- many people in the church have a misguided view of the subject and do not look kindly at her career choice.  One woman encountered by Hayhoe at a church in Texas, for example, believed that global warming was a lie taught in schools to mislead her children.  In an effort to realign misguided views like these, Katharine Hayhoe and her husband wrote a book addressing the deep-rooted emotions often associated with climate change.  People fear that addressing the climate issue will bring forth changes in the economy and uproot their way of life.  However, Hayhoe encourages her viewers to act out of love, as the Bible calls us to do, rather than out of fear.  Acting out of love inspires us to consider the poor and disadvantaged people around the globe when we respond to the reality of a changing climate.</p>

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<p>In the final segment of this three part video montage, Hayhoe addresses the question of what climate change means. Specifically, she is concerned about how global warming affects people on a personal level.  While global warming generally brings to mind melting ice caps and polar bears, its implications are far more widespread, affecting the lives of everyone around the world- from cotton farmers in Texas to public health workers in Chicago.  If nothing is done to change current emission levels, the number of days per year which exceed 100 degrees Fahrenheit, for example, will begin to increase dramatically, and if emissions are increased, many areas will even develop extreme conditions like those seen currently in Death Valley.  Hayhoe’s goal is to demonstrate clearly that the only way to preserve the world for future generations is to significantly reduce dependence on inefficient means of getting energy and instead transition to cleaner renewable energy sources.</p>

<p><strong>Editor's Note: These videos first appeared on the Nova program <a href="http://www.pbs.org/wgbh/nova/secretlife/scientists/katharine-hayhoe/" target="_blank">"The Secret Life of Scientists & Engineers"</a>.</strong></p>]]></content:encoded>
        <pubDate>Fri, 09 Nov 12 05:00:21 -0800</pubDate>
        <dc:creator>Katharine Hayhoe</dc:creator>
        <!--<dc:date>Nov 09, 2012 05:00</dc:date>-->
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        <title>Series: Decoding ENCODE</title>
        <link>http://biologos.org/blog/series/decoding&#45;encode&#45;series?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/decoding&#45;encode&#45;series?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>The BioLogos Foundation explains to the findings of the Encyclopedia of DNA Elements (ENCODE) project and responds to the claims that its discoveries challenge the theory of evolution, especially regarding so&#45;called &quot;junk DNA&quot;.</description>
        <content:encoded><![CDATA[<p>In 2003, under the leadership of BioLogos founder Francis Collins, the Human Genome Project sequenced the full human genome, showing us for the first time the order of the 3.2 billion chemical “bases” that make up the rungs of DNA’s double helix structure. The project identified and mapped 23,000 genes that code for proteins, but those genes make up less than 2% of the total sequence—far fewer than originally predicted, given the complexity of humans. While many non-coding sequences were identified as having function as well, there were still vast swaths of the genome that had no obvious function. In fact, what was known about certain classes of sequences suggested that they had no functional role for humans—such as the sequences identified as either transposons or transposon fragments that make up nearly half of our genome. These sorts of sequences seemed to fit into what was popularly known as the “junk DNA” category. </p>

<p>With the complete genome sequence in hand, we knew the sequence and location of our genes, but what we didn’t know was how all those genes are regulated: how do the trillions of cells in our bodies know when to turn on or off all those genes?  How do the hundreds of distinct cell types develop and function together, when they are all running on the same DNA “operating system?”  </p>
<p>That’s where the ENCODE (short for Encyclopedia of DNA Elements) project comes in. Launched in September 2003, shortly after the announced completion of the Human Genome Project, the goal of the ENCODE project is “to build a comprehensive parts list of functional elements in the human genome, including elements that act at the protein and RNA levels, and regulatory elements that control cells and circumstances in which a gene is active.” In other words, the project seeks to understand how the genome “works.”</p>

<p>Early this month, researchers from ENCODE released more than thirty papers presenting their findings. During a <em>Science</em> magazine <a href="http://news.sciencemag.org/sciencenow/2012/09/live-chat-figuring-out-what-dna.html">online chat</a>, the project’s data coordinator, Ewan Birney, explained the outcome:</p>

<blockquote>The ENCODE project aimed to start our understanding of how the human genome works. We know that (nearly) all the information that determines a human is in the genome, as we all start off as single cell with this DNA. However, we had a patchy understanding of how it works, in particular away from protein coding genes.<br /><br />

To work out how the genome works, we used the fact there are many tiny machines (proteins and RNA - RNA is very like DNA) in each of our cells which know how to "read" parts of the genome. By monitoring where these little molecular machines are on the genome, or how parts of the DNA are copied into RNA (there are quite a few different types of RNA as well), we start to gain some insight into the genome.<br /><br />

We did many such experiments, across different cell types (eg, one cell type was very similar to a liver cell type; another was very similar to a white blood cell). This way not only can we see what is similar, we can also see differences between these cell types.<br /><br />

There is a lot more to get to know and understand here - this is definitely closer to the start than the end. But it is a substantial amount of data, and analysis, to start on this journey.</blockquote>

<p>According to the abstract of one of the <a href="http://www.nature.com/nature/journal/v489/n7414/full/nature11247.html">lead papers</a> from <em>Nature</em>, this extraordinary glut of data “enabled us to assign biochemical functions for 80% of the genome, in particular outside of the well-studied protein-coding regions.”  Only 2% of the genome codes for proteins, but 80% or more has <em>some</em> biochemical function.  As a <em>Science</em> <a href="http://www.sciencemag.org/content/337/6099/1159">news article</a> put it, these 30 papers “sound the death knell for the idea that our DNA is mostly littered with useless bases.”</p>

<p>The pro-Intelligent Design organization The Discovery Institute has heralded the discovery as the “demise of junk DNA.”  Casey Luskin writes for their <a href="http://www.evolutionnews.org/2012/09/junk_no_more_en_1064001.html">blog</a> <em>Evolution News</em>:</p>

<blockquote>Let's simply observe that it provides a stunning vindication of the prediction of intelligent design that the genome will turn out to have mass functionality for so-called "junk" DNA. ENCODE researchers use words like "surprising" or "unprecedented." They talk about of how "human DNA is a lot more active than we expected." But under an intelligent design paradigm, none of this is surprising. In fact, it is exactly what ID predicted.</blockquote>

<p>The extent to which the ENCODE project been able to identify function has been surprising—even exhilarating—though scientists have for some time been getting glimpses of the many ways in which segments of DNA can be “active.”  Even in 1970 biologists knew that some non-coding DNA had function, and by 2003 there was a large body of work demonstrating that many non-coding elements acted as promoters, enhancers, insulators, and so on. Indeed, in recent years many have come to appreciate the fact that “junk” was never really an appropriate metaphor in the first place.   Still, because sequencing of multiple genomes has shed such extraordinary light on key evolutionary mechanisms, many geneticists have focused on function primarily in terms of which regions do or do not contribute to the evolutionary fitness of their host, rather than whether they were merely "doing something" biochemically.  What the impressive ENCODE project has done is open a treasure trove of new information that can only accelerate the pace at which researchers are able to explore the incredible subtlety and complexity of DNA, and refine the very concept of “functionality.” </p>

<p>So with all this in mind, is ENCODE a stunning victory for ID, as Luskin believes? Bryan College biologist Todd Wood thinks not.  He <a href="http://toddcwood.blogspot.co.uk/2012/09/everyones-excited-about-encode.html">writes</a>, “I don't think that function equates to design, nor do I think that design requires or predicts function.  They're not the same thing… my understanding of function does not require me to hypothesize God (or an anonymous designer, if you must) as the proximal cause.”  </p>

<p>We agree.  Indeed we would go on to say that evolution and design are not mutually exclusive.  So while finding function is not sufficient to prove design, recognizing that function has arisen by way of evolution does not indicate that God was not at work.  We at BioLogos believe God providentially works out his purposes—his designs—<em>through</em> the elegant processes of evolution, not in opposition to them.</p>

<p>Amazing as the new data are, it only strengthens and enhances our evidence for evolution.  While much of the genome is “doing something” biochemically, it is still likely that the majority of the sequence is evolutionarily neutral (Senior Fellow Dennis Venema discusses the evidence for this “neutrality” in a <a href="http://biologos.org/blog/understanding-evolution-is-there-junk-in-your-genome-part-1">post</a> on our site, including a striking comparison between 29 different mammal genomes and the human genome).  In fact, another  ENCODE researcher participating in the <em>Science</em> magazine chat, John A. Stamatoyannopoulos of the University of Washington School of Medicine, thinks the findings align beautifully with evolutionary theory:
</p>

<blockquote>ENCODE's data provide a unique and powerful window through which to view evolutionary change. We can see those changes directly by lining up the genome sequences of many different organisms -- these line-ups have revealed millions of regions where all the genomes agree, indicating sequences that have been specially preserved by evolution while others have decayed away (ie freely changed their letter codes). We now see that a large proportion of these 'conserved' regions are lighted up by ENCODE annotations, indicating that they are marking spots in the genome that contain important instructions for cell function.</blockquote>

<p>We’ve discussed “junk” DNA previously, including a multi-part series by Dennis Venema, and we’ve received many emails over the past few days asking for our comments on the ENCODE findings. On Monday and Tuesday, Dr. Venema will begin to offer his own thoughts on ENCODE.</p>

<p class="intro">A special thanks goes to Darrel Falk, Mark Sprinkle, Kathryn Applegate, Dennis Venema, and Tom Burnett for their contributions to this post.</p>]]></content:encoded>
        <pubDate>Wed, 26 Sep 12 05:00:35 -0700</pubDate>
        <dc:creator>Stephen Mapes, Dennis Venema</dc:creator>
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        <title>Denisovans, Humans and the Chromosome 2 Fusion</title>
        <link>http://biologos.org/blog/denisovans&#45;humans&#45;and&#45;the&#45;chromosome&#45;2&#45;fusion?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/denisovans&#45;humans&#45;and&#45;the&#45;chromosome&#45;2&#45;fusion?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>The Denisovans, an extinct hominid group that interbred with modern humans, made the news again lately with the publication of a more detailed study of their genome. One of the many interesting findings was that the Denisovans share the same chromosome 2 fusion that modern humans have.</description>
        <content:encoded><![CDATA[<br> </br><p>The Denisovans, an extinct hominid group that interbred with modern humans, made the news again lately with the publication of a more detailed study of their genome. One of the many interesting findings was that the Denisovans share the same chromosome 2 fusion that modern humans have. In this post, I review what we know about the origins of human chromosome 2, and then discuss the new Denisovan findings and their implications. </p>

<h3>The origins of human chromosome 2: a brief review</h3>
<p>Though I have discussed the evidence for a fusion event leading to human chromosome 2 before, perhaps a brief review of the evidence is in order. The human genome is made up of 23 pairs of chromosomes (for a total of 46 chromosomes). This makes us something of an oddity among living great apes, all the rest of whom  have 24 pairs of chromosomes (for a total of 48). Given that there are many independent lines of evidence that support the conclusion that we share a common ancestor with other great apes, this poses something of a conundrum: how is it that our species arrived at this specific chromosome number? If we were to represent this “problem” on a phylogeny, or tree of relatedness, it would look something like this (not to scale):</p>

<p class="caption-center"><img src="http://biologos.org/uploads/static-content/denisovans_fig_1.jpg" alt="" height="357" width="434"  /></p>
 
<p>Our closest living relatives, chimpanzees and bonobos, both have 48 chromosomes, as do all other great apes such as gorillas and orangutans. This pattern has one of two explanations, one of which is much more likely than the other. Either the common ancestor to these species had 48 chromosomes, and there was an event that reduced that number to 46 specifically on the lineage leading to humans (option A), or the common ancestor species had 46 chromosomes, and there were independent, repeated events that increased chromosome number in all other great ape species (option B). We can compare these options by placing the required event(s) on the phylogeny (again, not to scale): </p>

<p class="caption-center"><img src="http://biologos.org/uploads/static-content/denisovans_fig_2.jpg" alt="" height="300" width="570"  /></p>
 
<p>It should be obvious that the option that requires the fewest events is the more likely one – in this case option A with an event that reduces chromosome number in the lineage leading to humans. The other option, that of repeated, independent events to increase chromosome number, remains a formal, but unlikely, possibility. Events that reduce chromosome number are not frequent occurrences, so Option A is more likely than Option B.</p>

<p>We can also find further support for Option A, because it predicts a specific type of event, namely one that reduces chromosome number. Since <em>loss</em> of a large amount of chromosomal material is almost always detrimental, we need an event that reduces chromosome number without losing information. One way for this to happen is for two chromosomes to fuse together and become one. Initially, this event would produce an individual with 47 chromosomes, where two different chromosomes get stuck together. Contrary to what is often assumed, this individual would be fertile and able to interbreed with the others in his or her population (who continue to have 48 chromosomes). In a small population, over time, two relatives who both have one copy of the fusion chromosome may mate and produce some progeny with two copies of the fused chromosome, or the first individuals with 46 chromosomes. Since either a 48-pair set or a 46-pair set is preferable for ease of cell division, this population will either eventually get rid of the fusion variant (the most likely outcome), or by chance will switch over completely to the “new” form, with everyone bearing 46 chromosome pairs. While not overly likely, this type of event is not especially rare in mammals, and we have observed this sort of thing happening within recorded human history in other species.  Some mammalian species even maintain distinct populations in the wild with differing chromosome numbers due to fusions, and these populations retain the ability to interbreed. </p>

<p>Further evidence for a fusion event in the lineage leading to modern humans comes from comparing <em>synteny</em>, or gene locations and orders on chromosomes within modern great apes – an issue we have discussed <a href="http://biologos.org/blog/signature-in-the-synteny">here</a> before.  In brief, what we see in human chromosome 2 is exactly what we would predict for a fusion event. When compared to other great apes, we see the genes on human chromosome 2 match up, in order, with two smaller ape chromosomes. We also see that sequences used at the tips of chromosomes are present at the proposed fusion site, and that human chromosome 2 has not one but two sites for the cell cytoskeleton to attach to for cell division – but that one of the sites is mutated and not functional, though it lines up precisely with the location of this site on the appropriate ape chromosome. Together, this evidence consistently supports both common ancestry for humans and great apes, and specifically that the difference we see in our chromosome numbers arose due to a single fusion event. I briefly discussed this evidence in my <a href="http://biologos.org/blog/the-sorrows-and-joys-of-teaching-evolution">last post</a> where I describe how I teach some of this material and the compelling impact it has on students exploring the evolution question for the first time. </p>

<h3>Enter the Denisovans</h3>
<p>With that as background, we are now prepared to appreciate a new finding that comes from genomics work done on the Denisovan hominids, an archaic species that is more closely related to Neanderthals than to us, but that nonetheless interbred with some anatomically modern humans as they migrated out of Africa and populated the globe. (For those not familiar with the Denisovans, or the evidence for our interbreeding with them, both Darrel Falk and I have written on this previously, <a href="http://biologos.org/blog/a-geneticists-journey">here</a> and <a href="http://biologos.org/blog/understanding-evolution-neanderthals-denisovans-and-human-speciation">here</a>). Recently, a more detailed understanding of the Denisovan genome <a href="http://www.nature.com/news/new-dna-analysis-shows-ancient-humans-interbred-with-denisovans-1.11331">was published</a>, and nested in the new information is the discovery that the Denisovans share the 46 chromosome set with the same fusion that <a href="http://johnhawks.net/weblog/reviews/denisova/denisova-chromosome-2-2012.html">we have</a>. This strongly supports the hypothesis that the fusion event predates the separation of our species. If we were to represent this on a phylogeny, we can now place this event with more accuracy than before (as before, the phylogeny is not to scale): </p>

<p class="caption-center"><img src="http://biologos.org/uploads/static-content/denisovans_fig_3.jpg" alt="" height="452" width="513"  /></p>
 
<p>Despite this new information, one obvious question remains. Did the Neanderthals also have the 46-pair set? From looking at the phylogeny above, we can see that the most likely answer is that they did, since the fact that the Denisovans had it strongly implies that the last common ancestor of humans and Neanderthals / Denisovans had it as well, and the Neanderthal-Denisovan split comes later. While the Denisovan DNA samples are of high enough quality to make this assessment, we do not yet have Neanderthal DNA of high enough quality to do the same analysis with current methods (though one additional feature of the new work on the Denisovan genome is developing more sensitive DNA sequencing techniques that may resolve this question in the future).</p>

<p>In other words, this fusion seems to be an ancient one, predating our species by several hundred thousand years. Present estimates of the last common ancestor between humans and Neanderthals / Denisovans  range at about 800,000 years ago.</p>

<h3>Implications for understanding our “becoming human”</h3>
<p>The main implication from this work is that it places the fusion event well before the advent of our species. I’ve often chatted informally with Christians about evolution, and at times some have thought that this fusion event was what “started” our species, or made our species unable to interbreed with other groups. Some have even suggested that perhaps the fusion event was what produced the first human (i.e. Adam). </p>

<p>Note that thinking this way suggests a misunderstanding of how chromosome fusions occur and what effect they have on their hosts. A fusion does not precipitate a speciation event, but rather the individual with the fusion remains a part of his or her population, and able to interbreed, even if with reduced fertility. Also, there is no necessary biological effect or change that the fusion produces on the appearance of the organism.  These misunderstandings aside, however,what this new evidence shows is that this fusion event took place long before modern humans arose at around 200,000 years ago. Indeed, the 800,000 years ago date for the last human - Denisovan common ancestor means that this is the most recent date possible for the fusion. While it is an interesting piece of our evolutionary history, it doesn’t seem to have much to do with how we came to acquire the traits that set us apart from, and ultimately outcompete, other similar species.</p> 
<br> </br>]]></content:encoded>
        <pubDate>Thu, 06 Sep 12 13:07:21 -0700</pubDate>
        <dc:creator>Dennis Venema</dc:creator>
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        <title>Series: Asa Gray and Charles Darwin Discuss Evolution and Design</title>
        <link>http://biologos.org/blog/series/asa&#45;gray&#45;and&#45;charles&#45;darwin&#45;discuss&#45;evolution&#45;and&#45;design?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/asa&#45;gray&#45;and&#45;charles&#45;darwin&#45;discuss&#45;evolution&#45;and&#45;design?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Many Christians believe that they face a painful choice&#45;&#45; either life was designed by God or it is an evolutionary product of natural selection.  Charles Darwin himself believed in this dichotomy, and people ever since have felt the need to &quot;choose sides&quot;.  However, looking back at history, we find that one of Darwin&apos;s chief scientific colleagues, Asa Gray, did not share this perspective. In this three&#45;part essay, part 1 charts the relationship of Asa Gray and Charles Darwin.  Part 2 describes Darwin&apos;s struggle with the problem of natural evil and design in nature, and part 3 explores how Asa Gray was able to embrace evolution without rejecting the idea of design.</description>
        <content:encoded><![CDATA[<h3>Asa Gray</h3>

<p class="caption-left"><img src="http://biologos.org/uploads/static-content/asa_gray_image_3.jpg" alt="" height="374" width="250"  /><br />Asa Gray</p>

<p>If Thomas Huxley earned the title of "Darwin's bulldog," then Asa Gray should be remembered as "Darwin's dove." Whereas Huxley enjoyed a good fight in his defense of Darwin's theory, Gray sought to mediate and bring sides together around a common understanding of "good science." As Darwin's strongest and most vocal scientific ally in the United States, Gray recognized the scientific importance of Darwin's efforts for the growing professionalism of biological researchers.</p>

<p>But as an orthodox Christian, a Presbyterian firmly devoted to the faith expressed in the Nicene Creed, Gray saw in Darwin's theory both evidence for his philosophical commitment to natural theology and support for his opposition to the idealism advocated by Louis Agassiz and the <em>Naturphilosophen</em> in both Europe and America. Indeed, Agassiz's advocacy of Platonic forms as a basis of biological understanding (e.g., "A species is a thought of the creator")<sup>1</sup> would be a major source of American opposition to Darwin's theory.</p>

<p>Professor of botany at Harvard during most of the middle half of the nineteenth century, Gray was one of the few members of the scientific community to whom Darwin revealed his theory before the publication of <em>On the Origin of Species,</em> and, from what I can tell, the only American. Gray and Darwin met briefly in January 1839 during one of Gray's visits to England. Later, during the 1850s, Darwin wrote Gray on several occasions requesting information--a practice that Darwin frequently employed.  In 1854, Darwin's friend and confidant, Joseph Hooker, showed Darwin Gray's review of Hooker's <em>Flora of New Zealand</em>, in which Gray had argued strongly against Louis Agassiz's idealism and had raised questions from his own work on the stability of species. Gray was not yet ready to deny their permanence, but hybrids and other observations were beginning to trouble him.</p>

<p>The next year Gray wrote a lucid and penetrating positive evaluation of Alphonse De Candolle's two-volume <em>Géographie botanique raisonnée</em>, a pioneering work dealing with plant geography and distribution from a statistical perspective. Hooker had sneeringly dismissed the work. In A. Hunter Dupree's authoritative biography of Gray, he describes Gray's puzzlement at Hooker's response in these terms:</p>

<blockquote>Although in the long view Gray's evaluation of the epoch-making nature of De Candolle's book was more justified than Hooker's sneers, [Gray was confused by his response, for] Hooker seemed to be talking with a more comprehensive theory definitely in mind, some reason for taking his position, which he did not divulge and which his friend [Gray] did not possess.<sup>2</sup></blockquote>

<p>Darwin, however, saw in both Gray's review of Hooker's book and in his comments on De Candolle's tome that Gray was troubled by some of the same empirical data that had been bothering him. In April 1855, Darwin wrote Gray to urge that Gray update his <em>Manual of the Botany of the Northern United States</em> first published in 1848, and especially to address the issue of the range of Alpine plants in the United States. Specifically, he said: "Now I would say it is your duty to generalise as far as you safely can from your as yet completed work."<sup>3</sup></p>

<p>Behind this request was Darwin's desire to test his impression that Gray could make a good ally. Gray passed the test, and finally, in July 1857, Darwin let Gray in on his theory of the transmutation of species. Gray was never an uncritical supporter, and there are many evidences in the correspondence between these two scientists that Gray was willing to challenge Darwin and disagree with some of his conclusions. Nevertheless, Gray saw the importance of Darwin's work and the ways in which it provided answers to the troublesome issues that he had confronted in his own botanical efforts.</p>

<p class="caption-center"><img src="http://biologos.org/uploads/static-content/asa_gray_image_2.jpg" alt="" height="294" width="570"  /></p>

<h3>Gray responds to Darwin's theory</h3>

<p>After considerable interchange--one might even say debate--among Gray, Darwin, and Hooker, Gray wrote to Hooker in October 1859 (one month before the publication of <em>On the Origin of Species</em>) saying that he had absolutely no problem with cognate species arising by variation. He did, however, raise a concern that would be the source of much future discussion. He wondered about Darwin's "carry[ing] out this view to its ultimate and legitimate results,--how [do] you connect the philosophy of religion with the philosophy of your science." He added: "I should feel uneasy if I could not connect them into a consistent whole--i.e., fundamental principles of science should not be in conflict."<sup>4</sup></p>

<p>When <em>Origins</em> was published, Gray wrote a clear, positive, yet critical review in <em>The American Journal of Science</em>. Aware of mounting religious opposition, he ended his review by arguing that whereas one could use Darwin's theory in support of an atheistic view of Nature, one could use any scientific theory in that way. He wrote:  "The theory of gravitation and ... the nebular hypothesis assume a <em>universal and ultimate</em> physical cause, from which the effects in nature must necessarily have resulted."<sup>5</sup> He did not see the physicists and astronomers who adopted Newton's theories as atheists or pantheists, though Leibniz earlier had raised such reservations.  And a similar situation existed with the origin of species by natural selection.  Darwin, Gray continued: "merely takes up a particular, proximate cause, or set of such causes, from which, it is argued, the present diversity of species has or may have contingently resulted. The author does not say necessarily resulted."<sup>6</sup></p>

<p>This far Gray could go with Darwin. But there was a point at which he parted company, and that was the fortuitous <em>randomness</em> of the process that Darwin's theory seemed to imply.</p>

<p class="intro"> In part 2, Dr. Miles describes Darwin's struggle with the problem of natural evil and design in nature.</p>

<h3>Notes</h3>

<p class="date">1. Cited in A. Hunter Dupree, <em>Asa Gray: American Botanist, Friend of Darwin</em> (Baltimore: The Johns Hopkins Press, 1959), 151.
2. Ibid., 236.<br> 
3. Charles Darwin, <em>More Letters of Charles Darwin</em>, ed. Francis Darwin, (New York: D. Appleton and Company, 1903), 252.<br>  
4. Dupree, <em>Asa Gray</em>, 266. <br> 
5. Asa Gray, "The Origin of Species" in <em>Darwiniana</em> (Cambridge, MA: The Belknap Press of Harvard University, 1963), 44. <br> 
6. Ibid.</p>
]]></content:encoded>
        <pubDate>Sat, 04 Aug 12 07:21:11 -0700</pubDate>
        <dc:creator>Sara Joan Miles</dc:creator>
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        <title>David Lack and Darwin’s Finches</title>
        <link>http://biologos.org/blog/david&#45;lack&#45;and&#45;darwins&#45;finches?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/david&#45;lack&#45;and&#45;darwins&#45;finches?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Considering the immense popularity of &quot;Darwin&apos;s finches&quot;, it is quite surprising to learn that Charles Darwin himself had very little to say about them. In fact, it was actually David Lack, one century later, who conducted the critical research that immortalized the finches in biology textbooks and popular lore.</description>
        <content:encoded><![CDATA[<h3>Darwin’s Finches? </h3>

<p>Darwin’s finches are some of the most visible and recognizable symbols of evolution in the world today.  Biology textbooks feature them prominently, and the National Academy of Sciences has enshrined them in the entrance of their headquarters in Washington, DC.  Surely the finches that Darwin collected on the Galápagos islands were a central feature of his evolutionary theory, right?</p>

<p class="caption-left"><img src="http://biologos.org/uploads/static-content/Lacks_Finches_NASlobby.jpg" alt="Lobby of the National Academy of Sciences" height="350" width="570"  /></br>Lobby of The National Academies Building.  Courtesy of CPNAS. Photo by Robert Lautman</p>

<p>Actually, the Galápagos finches are never even mentioned in Darwin’s famous work <em>On the Origin of Species</em>.  Nor do they appear in Darwin’s famous notebooks on “Transmutation of Species”, in which he formulated the idea of evolution by natural selection.<sup>1</sup>  Even Darwin’s private diary of his voyage on the HMS <em>Beagle</em> only mentions the Galápagos finches briefly in passing.<sup>2</sup> </p> 

<p>It was only in 1845, in the second edition of <em>The Voyage of the Beagle</em>, that Darwin included a tantalizing sentence about the Galápagos finches:</p>

<blockquote>Seeing this gradation and diversity of structure in one small, intimately related group of birds, one might really fancy that from an original paucity of birds in this archipelago, one species had been taken and modified for different ends.<sup>3</sup>
</blockquote>

<p>However insightful this statement may have been, Darwin never published anything else about the Galápagos finches for the rest of his life.  Nor did he publically present these birds as direct evidence for this theory of evolution.<sup>4</sup> 
</p>

<p>If these finches were so important to Darwin’s evolutionary theory, why did he remain silent about them?  One of his comments in <em>The Voyage of the Beagle</em> provides us with a clue:</p>

<blockquote>Unfortunately most of the specimens of the finch tribe were mingled together; but I have strong reasons to suspect that some of the species of the subgroup Geospiza are confined to separate islands.<sup>5</sup> </blockquote>

<p>When Darwin was exploring the Galápagos himself in 1835, he had not formulated his theory of evolution yet, and thus he did know what data would be necessary to make definitive conclusions about finch evolution.  In particular, he did not keep careful track of which of his specimens came from which islands.   Moreover, as was customary among naturalists at that time, Darwin only collected a small number specimens—he brought home only 31 finches and 64 total birds from the Galápagos.<sup>6</sup>   </p>

<p>Though Darwin sensed that these birds were truly special, he lacked sufficient evidence to reach any specific conclusions about their evolutionary origins.  It would be up to the rest of the scientific community to carry out the necessary empirical research.  Subsequent expeditions in 1868, 1891, 1897, and 1905 brought back thousands of Galápagos finch specimens, but instead of unlocking the mysteries of evolutionary theory, the Galápagos finches became a great enigma.<sup>7</sup>  </p>

<p>A century after Darwin's voyage, scientists still struggled to explain the staggering variety of finches on this tiny, remote archipelago.  By the mid-1930’s, British Museum ornithologist Percy Lowe argued that the finches presented a "biological problem of first class importance", and he told the British Association for the Advancement of Science that the finches displayed a "bewildering diversity, intergradation, and distribution".<sup>8</sup>   Who would be up to the challenge of making sense of such tremendous biological complexity? It was David Lack.</p>
 
<h3>David Lack</h3>

<p class="caption-right"><img src="http://biologos.org/uploads/static-content/David_Lack.png" alt="Ornithologist David Lack" height="291" width="250"  /></br>Ornithologist David Lack</p>

<p>David Lack had an exceptionally keen eye for bird-watching, and he possessed a passion to match it.  By age 15, he had already observed 100 distinct species of birds, and before entering college, authored his first scientific paper.  At Cambridge University in the early 1930’s, Lack was disappointed to find that his zoology professors taught “nothing about evolution, ecology, behavior or genetics, and of course nothing about birds.”<sup>9</sup>  In fact, at that time, there were only two professional ornithologists in all of Britain!</p>

<p>Thus David Lack took it upon himself to create his own learning opportunities.   As an undergraduate, he became the president of the Cambridge Ornithological Club, traveled to Greenland for a bird-watching expedition, and cultivated a relationship with the prominent biologist Julian Huxley (grandson of Thomas Henry Huxley).  Huxley was an inspiring mentor and encouraged Lack to expand his research further by studying tropical birds.<sup>10</sup>  Following this advice, Lack embarked on a research trip to Tanzania in the summer of 1934, but his greatest adventure was yet to come. </p>

<p>In 1937, Lack became fascinated by the scientific mysteries surrounding the Galápagos finches.  But in order to study their behavior, Lack would need to travel to remote islands halfway around the world.   How could he possibly get there?  Once again, Julian Huxley was tremendously supportive and raised funds from two prominent scientific societies to pay for his expedition.  After a long delay, David Lack and five companions finally set off on their journey.</p>

<p>Instead of residing in comfortable quarters aboard a royal naval ship, Lack’s group subsisted on a shoestring budget, traveled on commercial steamers, and stayed with local settlers.  Their experience was definitely not a romantic tale of imperial expedition:</p>

<blockquote>The Galápagos are interesting, but scarcely a residential paradise.  The biological peculiarities are offset by an enervating climate, monotonous scenery, dense thorn scrub, cactus spines, loose sharp lava, food deficiencies, water shortage, black rats, fleas, jiggers, ants, mosquitoes, scorpions, Ecuadorian Indians of doubtful honesty, and dejected, disillusioned European settlers.<sup>11</sup></blockquote>

<p>Whereas Charles Darwin spent only nineteen days on the shores of the Galápagos, Lack and his crew conducted more than five months of meticulous and exhausting study in the harsh climate.  At that time, even the finches themselves provided little solace.  Lack wrote,</p>
	
<blockquote>Darwin’s finches are dull to look at, not only in their orderly ranks in museum trays, but also when they hop about the ground or perch in the trees of the Galápagos, making dull unmusical noises.  Only the variety of their beaks and the number of their species excite attention.<sup>12</sup> <strong></strong></blockquote>

<p class="caption-left"><img src="http://biologos.org/uploads/static-content/Lacks_Finches_Cactus_Finch.jpg" alt="Large Cactus Finch–the Galapagos." height="215" width="320"  /></br>Large Cactus Finch on Española Island in the Galápagos Islands</p>

<p>The repetitive tedium requisite for important scientific discoveries is rarely discussed in public, and even today many bright-eyed science students become disillusioned by the painstaking work demanded by their Ph.D. programs.  But one of the things that distinguishes great scientists is their unwavering commitment and tenacity in completing major projects. David Lack's efforts were not in vain: </p>

<p><em>"Despite his personal discomforts (or perhaps because of them), Lack did see something on the Galápagos that no one had ever seen before—natural selection at work among its finches through interspecies competition."</em> <sup>13</sup></p>

<p>When the birds’ breeding season ended in 1939, Lack was ready to return to his home in England.  But the captive finches that he had brought with him fared so badly on the voyage home that he detoured to San Francisco and put them in the care of the California Academy of Sciences.  Turning this mishap into an opportunity, Lack stayed there for five additional months to study the Academy’s enormous  collection of Galápagos finch specimens.<sup>14</sup> </p>

<p>To complete his systematic research, Lack then travelled across the United States to study the Galápagos finch collection housed at the American Museum in New York.<sup>15</sup>   Altogether, Lack examined more than 8000 specimens and specifically measured the length, width, and depth of all their beaks.<sup>16</sup> </p>

<p>Lack’s final obstacle was in getting his research published.  Though he completed his academic manuscript “The Galápagos Finches—A Study in Variation” in 1940, paper shortages during World War II delayed its publication by the California Academy of Sciences until 1945.  Were he only interested in making an original contribution to science, Lack could have stopped here and congratulated himself on a job well-done.  However, his motivation sprung from a deeper source:</p>

<p class="caption-right"><img src="http://biologos.org/uploads/static-content/Lacks14finches_sm.jpg" alt="David Lack's illustration of 14 Finches" height="455" width="300" /> </br>David Lack's drawing of 14 species of Galápagos finches, p. 19 of <em>Darwin’s Finches</em></p>

<p><em>"I did not watch birds primarily for scientific reasons but for sheer enjoyment, and from the age of 15 onward returned day after day in a glow of excitement after seeing a new bird or a new habit."</em> <sup>17</sup></p>

<p>Lack’s joyful fascination with the Galápagos finches inspired him to continue developing his conclusions long after returning from his expedition.  While waiting for his academic paper to be published, he began writing a book that would enable students and the general public to share his excitement about these remarkable birds and the evolutionary processes that shaped them.</p>

<p>First published in 1947, Lack’s book became tremendously influential.  Before this time, biology textbooks had never even mentioned the Galápagos finches.  But after David Lack’s study, the finches became a primary example of evolution by natural selection, specifically <a href="http://en.wikipedia.org/wiki/Adaptive_radiation">adaptive radiation</a>.  Not only did textbooks fully rely on Lack’s findings, they also followed his lead in calling them “Darwin’s finches”, the title of Lack’s famous book.<sup>18</sup> </p>

<h3>Iconic Finches</h3>

<p>What was it about these birds that made them such a prominent symbol of evolution?  As Darwin himself pointed out, the numerous Galápagos finch populations each have distinctive beaks, and he speculated that they could have evolved from an ancestral species that came to the islands.  But a complete picture of finch evolution would have to wait another hundred years, when David Lack arrived.</p>

<p>During his five months on the Galápagos, including both the rainy and dry seasons, Lack observed that these beak differences enable the finches to subsist on different kinds of food:</p>

<blockquote>The beak differences between most of the genera and subgenera of Darwin's finches are clearly correlated with differences in feeding methods.  This is well borne out by the heavy, finch-like beak of the seed-eating <em>Geospiza</em>, the long beak of the flower-probing <em>Cactornis</em>, the somewhat parrot-like beak of the leaf, bud, and fruit-eating <em>Platyspiza</em>, the woodpecker-like beak of the woodboring <em>Catcospiza</em>, and the warbler-like beaks of the insect-eating <em>certhidea</em> and <em>Pinaroloxias</em>.<sup>19</sup>  </blockquote>

<p class="caption-left"><img src="http://biologos.org/uploads/static-content/finchbeaks_sm.jpg" alt="" height="270" width="350"  /> </br>Lack's image of beak adaptations from <em>Darwin’s Finches</em></p>



<p>Specializing in such different sources of food enables these finches to live in close proximity without directly competing with each other or driving populations to extinction.  The fact that so many of these closely related finches are able to co-exist is a remarkable fact in itself.  As Lack himself put it, “It is not only the origin, but also the persistence, of new species which require explanation.”<sup>20</sup> </p>

<p>But it is also fascinating to consider how these birds got to be so different in the first place.  How did a finch come to have a beak like a “parrot”, “woodpecker”, or “warbler”?  The answer lies in the distinct characteristics of the Galápagos.  Because the islands are so remote, no actual parrots, woodpeckers, or warblers ever settled on it.  In the absence of these species, the Galápagos finches were able to adopt feeding habits and forms that they would never have taken on a large continent full of other birds competing for food.  The isolation of these islands offered just the right conditions for us to see living examples of adaptive radiation.<sup>21</sup> </p>

<h3>Conclusion</h3>

<p>Considering the immense popularity of the Galápagos finches, it is quite surprising to learn that Charles Darwin himself had so little to say about them.  In fact, it was actually David Lack, one century later, who conducted the critical research that immortalized the finches in biology textbooks and popular lore.  By naming his landmark book <em>Darwin’s Finches</em>,<sup>22</sup>  Lack paid homage to the man whose voyage on the HMS Beagle helped transform the study of natural history.  But at the same time, Lack also obscured the fact that evolutionary biology is an enterprise conducted by a large community of brilliant scholars, not just the product of one man’s efforts.</p>

<p>This tendency to immortalize “great men of science” has also led many people to refer to modern evolutionary theory as <em>Darwinism</em>, despite the fact that it has substantially changed and developed over the past 150 years.  It is important to give credit where credit is due, and if that’s the case, we should seriously reconsider how we refer to the Galapagos finches.  Evolutionary biologist Dolph Schluter, who studied the finches several decades after David Lack, had this to say:</p>

<blockquote>I find Lack's intuition really stunning given how little information he had.  He's my hero actually… They should be called Lack's finches.<sup>23</sup></blockquote>

<p class="intro">In the second part of this series, we’ll explore the fact that David Lack, in addition to being a world-renowned evolutionary biologist, was also a devout Christian.  His study of evolutionary theory did not cause him to lose his faith; in fact, he actually <em>converted</em> to Christianity after completing his Galápagos finch research.</p>

<h3>For Discussion</h3>
<strong>We’ve seen in this essay that the term “Darwin’s finches” is misleading, especially since Charles Darwin himself didn’t make the Galapagos finches famous.  Is it also problematic that people refer to modern evolutionary theory as “Darwinism”?  What misunderstandings can arise by associating an entire field of science with just a single person? Share your thoughts in the comments section below.</strong></p>

<h3>Further Reading</h3>
<ul><li>Grant, Peter R.; Grant, B. Rosemary. <em>How and Why Species Multiply: The Radiation of Darwin's Finches</em>, Princeton University Press, 2008.</li>

<li>Sulloway, Frank J. (Spring 1982), "Darwin and His Finches: The Evolution of a Legend" (<a href="http://www.sulloway.org/Finches.pdf">PDF</a>), <em>Journal of the History of Biology</em> 15 (1): 1–53.</li>

<li>Weiner, Jonathon. <em>The Beak of the Finch: A Story of Evolution in Our Time</em>.  Vintage Books, 1995.</li></ul>

<h3>Notes</h3>
<p class="date">1.  Sulloway, F. (1983). "Darwin and his finches: The evolution of a legend." <em>Journal of the history of biology</em> 15(1): 32. Darwin’s notebooks on transmutation mentioned Galapagos tortoises and mockingbirds, not finches.<br>
2.  Lack, David. <em>Darwin’s Finches</em>.  Cambridge University Press, 1947: 9.  Confirmed by Sulloway (1983), p5. <br>
3.  Darwin, Charles. <em>Journal of researches into the natural history and geology of the countries visited during the voyage of H.M.S. Beagle round the world</em>. London: John Murray. 2d ed. 1845: 379-80.  This edition of the book also contained the drawings of four different finches that have become enshrined in biology textbooks and on the walls of the National Academy of Sciences in Washington, DC.  <br>
4.  Sulloway, p35.  Sulloway points out that the first published evolutionary account of the Galapagos finches was not until 1876, by Osbert Salvin: "On the Avifauna of the Galapagos Archipelago." <em>Trans. Zool. Soc. London</em>, 9:447-51.<br>
5.  Darwin (1845), p395.<br>
6.  Sulloway, p40.<br>
7.  Sulloway, p40.<br>
8.  Larson, E. J. <em>Evolution's Workshop: God and Science on the Galapagos Islands</em>. New York, Basic Books, 2001: 166-67.<br>
9.  Lack, David. (1973) “My life as an amateur ornithologist.” <em>Ibis</em>: 424. <br>
10.  Lack (1973), 425-27.<br>
11.  Lack (1947), p1.<br>
12.  Lack (1947), p11.<br>
13.  Larson, 167-68. <br>
14.  The California Academy of Sciences sponsored an expedition to the Galapagos in 1905-06 and collected nearly 9000 Galapagos finch specimens (Sulloway, p40).<br>
15.  In New York, Lack roomed with the curator of the finch collection—German émigré zoologist Ernst Mayr.  By developing this relationship, Lack had close ties with two of the biggest figures in the neo-Darwinian synthesis, Julian Huxley and Ernst Mayr (Larson, 168).<br>
16.  Larson, p168.<br>
17.  Lack (1973), p424.<br>
18.  Larson, p198.<br>
19.  Lack (1947), p60.<br>
20.  Lack (1947), p158.<br>
21.  See Lack’s concluding chapter on “Adaptive Radiation”, pp146-159 of <em>Darwin’s Finches</em> (1947).<br>
22.  British ornithologist Percy Lowe originally proposed the name “Darwin’s finches” in 1935, but the name did not catch on until Lack used it in his book.  See P.R. Lowe, (1936) "The Finches of the Galapagos in Relation to Darwin's Conception of Species." <em>Ibis</em>, 13th ser., 6:310-321.  (Cited in Larson, p287)<br>
23.  Schluter, in an interview with Edward Larson, 16 March 2000.</p>
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        <pubDate>Wed, 01 Aug 12 04:43:25 -0700</pubDate>
        <dc:creator>Thomas Burnett</dc:creator>
        <!--<dc:date>Aug 01, 2012 04:43</dc:date>-->
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            <item>
        <title>Series: The Human Fossil Record</title>
        <link>http://biologos.org/blog/series/human&#45;fossil&#45;record?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/human&#45;fossil&#45;record?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In this series, James Kidder provides an intriguing study on transitional fossils and the evolutionary history of modern humans.  He begins by discussing the fossil record, explaining how new forms are classified. He then explains the physically distinguishing trait of humankind—bipedalism.  From the discovery of Ardipithecus, the earliest known hominin, to the australopithecines, the most prolific hominin, Kidder focuses on the discovery, the anatomy, and the interpretation of these ancestral remains.</description>
        <content:encoded><![CDATA[<h3>Discovery</h3>

<p class="caption-left"><img src="http://biologos.org/uploads/static-content/Eugene_Dubois.jpg" alt="" height="320" width="240"  /></br>Eugene Dubois</p>
It was 1890 and <a href="http://en.wikipedia.org/wiki/Eugene_Dubois">Eugene Dubois</a> was tired.  He had searched everywhere in Sumatra for the human ancestors that were supposed to be there—at least according to the theories of his mentor, famed German naturalist Ernst Haeckel.  Instead, he had found only heat and malaria.</p>

<p>13 years before, in 1877, Dubois had arrived in Amsterdam to study medicine, but always harboring a desire to study the ancestry of modern humans.  So, after four years at the University there, he accepted an invitation to go to the University of Utrecht to study comparative anatomy and devote himself to the latest thinking about the origins of the human species.  It was during his time at Utrecht (from 1881 to 1887) that Dubois became enamored of Haeckel’s views on human origins, which differed from those of Darwin.  While Darwin argued that humans had evolved in Africa, the region in which our closest living relatives—the chimpanzees and gorillas—still live, Haeckel believed that the origins of humanity lay in East Asia.  This was so, he believed, because of his own observations of gibbons that walk bipedally when on the ground. </p>

<p>Haeckel also believed that there had once been a large landmass called Lemuria between the continents of Africa and Asia.  In his view, Lemuria  had since become submerged, leaving the modern islands of Madagascar and the East Indies as its only remains.  The idea of submerged continents was not unusual for the late 19th-century, as people struggled to understand the character of biological diversity present in the world and why there were such striking similarities between animals that were geographically dispersed.  The geographical distribution of marsupial fossils in South America and Australia is an example of this sort of problem, and one that was not solved until the second half of the 20th century when continental drift reconstructions suggested that ancient marsupials had used Antarctica as a conduit between the other two continents.  Not only did such theories make sense of modern distributions, they were confirmed with later discoveries of marsupial fossils in Antarctica.</p>

<p>In any case, in 1888 Dubois joined the army and set out for the Dutch East Indies to pursue his ideas.  For the next two years, he would comb Sumatra attempting to locate the hominin remains that Haeckel promised would be there. In hindsight, what Dubois was attempting was something that had never been done before: discovery of hominin material through the tools of archaeological excavation.  Up to this point, all of the human fossils had been found on the surface, eroding out of the side of a bank, or as a result of farming.  It had not occurred to anyone to go looking for human ancestors.  </p>

<p>Now, with his supply of prison workers dwindling due to desertion and fever, he had almost run out of options and was on the verge of failure.  Using almost all of his remaining resources, he decided to abandon his excavations on Sumatra and turn to the nearby island of Java.  Emboldened by the fact that early modern human fossils had been discovered there (at Wadjak), he arrived and settled in at Trinil, on the banks of the Solo River, in 1890. </p>

<p class="caption-right"><img src="http://biologos.org/uploads/static-content/kidder_10_1_1.jpg" alt="" height="377" width="318"  /><br />Figure 1: Dubois' <em>Pithecanthropus erectus</em></p>

<p>The very next year, Dubois’ long-standing efforts were finally rewarded, first with the discovery of a skullcap (calvaria) of a hominin cranium, and then with an intact femur (Figure 1).  Judging by what he knew of cranial anatomy, Dubois estimated that the skull would have been approximately 900 cubic centimeters (cc) in volume, placing it below even the lowest threshold of modern humans.  Further, he noticed that it was not like modern humans in shape, being too long and low. He concluded that it showed “evidence of a form intermediate between man and the anthropoid apes” (Dubois, 1896). Dubois envisioned a sequence of forms in which the gibbon gave rise to a form of chimpanzee called <em>Anthropopithecus sivalensis</em>, which then gave rise to the form represented by the Trinil remains, after which <em>Homo sapiens</em> arose (Turner, 1895).  </p>

<p>Dubois spent the next twenty years on the road with his find, trying to drum up support for its place in human prehistory.  As with Raymond Dart’s discovery of the first australopithecine thirty-three years later, Dubois did not receive a warm reception.  Most critics simply said that he had gotten it wrong and that the femur did not belong to the same individual as the obviously-primitive skull cap. Some of the criticism Dubois suffered could have been mitigated had he been more open to sharing the Trinil materials; but, instead, he allowed very little access to the bones, so that very few people knew exactly what they looked like. Adding to Dubois’s credibility problems was the 1911 “discovery” of Piltdown.  This intentional hoax turned the paleoanthropology world on its head for forty years, sending researchers down innumerable rabbit holes.  As I noted in a <a href="http://biologos.org/blog/the-dispersal-of-the-australopithecines">previous post</a>, the Piltdown remains made all of the other hominin finds appear too “ape-like” to be on the road to humanity and informed many opinions about finds such as those from Trinil.  </p>

<p>On the other hand, some critics of Dubois’ new hominin claim were vicious, and questioned both his academic abilities and his judgment (Shipman & Storm, 2002)—in addition to the interpretation of the find itself. It was in reference to Dubois’ work that the term “Missing Link” was first used with reference to a particular human fossil, originating with Charles Lyell (1863) and describing palaeontological gaps.  And ironically, it was in one of the most stinging criticisms of Dubois’ work that the name that would eventually stick was first used: “<em>Homo erectus</em>.” Eventually, many other finds in the same general area and across Southeast Asia demonstrated that what Dubois had found <em>was</em> a real, previously-unknown hominin form, and the first to colonize the Asian continent and the islands leading off towards Oceania. </p>

<h3><em>Homo erectus</em> across South East Asia: </h3>

<p class="caption-left"><img src="http://biologos.org/uploads/static-content/kidder_10_1_2.jpg" alt="" height="180" width="215"  /><br />Figure 2: Sangiran 17</p>

<h4><em>Sangiran</em></h4>

<p>The earliest point at which <em>Homo erectus</em> appears to have begun to colonize the greater East Asian region is around 1.8 million years ago, represented first by the partial child’s skull found at the site of Modjokerto, and then, at around 1.66 million years ago, at the site of Sangiran, in Trinil, where Dubois had made his landmark discovery.  This site was rich, yielding the remains of many crania, perhaps best represented by Sangiran 17 (Figure 2), an almost complete skull.  </p>

<p>The material from the Sangiran site is very diverse morphologically, with some crania having capacities of as little as 700 to 800 cc, and other, larger heads with volumes in the range of 1000 cc. As with the late <em>Homo ergaster</em> finds from Africa, the remains from Sangiran yielded crania that were still widest at their bases, possessing large brow ridges. Some have thick cranial bones and are very robust (Sangiran 4), while others are very gracile (Sangiran 31).  What this variation means is not clear, but most workers believe it represents a very diverse diachronic population (that is, one group living and moving around over a long period) rather than separate species inhabiting the area.  The Sangiran site yielded fossil material in an almost continuous succession from approximately 1.66 million years ago to less than 800,000 years ago.  </p>

<p>Because the area of the excavations—the Sangiran Dome—is a volcanic deposit, the layers have been securely dated by the <a href="http://en.wikipedia.org/wiki/40Ar/39Ar"><sup>40</sup>Ar/<sup>39</sup>Ar method</a>, although questions remain about the historical sequence and distribution of other animals that lived there through the ages (its <a href="http://en.wikipedia.org/wiki/Faunal_succession">faunal succession</a>).  The problem is that many of the fossils were not found in context, and relating them directly to the stratigraphy is tenuous.  Despite this, most workers are comfortable with the earliest hominins in the region being at least 1.5 million years old.  </p>

<p>One of the things hampering workers in this region is the comparative paucity of recovered stone tools.  Those that have been found suggest a technological stage similar to the late Oldowan design, equivalent to that being created by the <em>Homo ergaster</em> populations inhabiting the area of Dmanisi and East Africa.  Unfortunately, none of the tools have been associated with the hominins directly so it is not exactly clear who made them.  </p>

<p class="caption-left"><img src="http://biologos.org/uploads/static-content/kidder_10_1_3.jpg" alt="" height="343" width="228"  /><br />Figure 3: Sambungmacan 3</p>

<h4><em>Sambungmacan</em></h4>

<p>Another major find from the area where Dubois brought <em>Homo erectus</em> to light is the cranium from the site of Sambungmachan.  This skull was reportedly found in 1977 but was then illegally sold to the antiquities market, where is spent considerable time in different collections before being “rediscovered” in 1998—in a New York nature curio shop called Maxilla and Mandible, Inc. (Delson et al., 2001).  This was an almost-complete calvaria (Figure 3), with only part of the base missing.  It is equivalent in size to the fossils from Sangiran, with a cranial capacity of around 1000 cc.  It has a large brow ridge extending all of the way across the top of the eyes, a long, low cranium with a sloping forehead and a maximum width near the cranial base—all features that are also characteristic of the late African <em>H. ergaster</em> and Sangiran crania.  Although we will never know exactly how old this cranium is, its morphology is consistent with that of the material from Sangiran.  </p>

<p class="caption-right"><img src="http://biologos.org/uploads/static-content/kidder_10_1_4.jpg" alt="" height="185" width="233"  /><br />Figure 4: Ngandong 6</p>

<h4><em>Ngandong</em></h4>

<p>Later in time, but also located on the Solo River, is the site of Ngandong, excavated by Oppenoorth in the early 1930s.  At this site, fourteen calvaria have been discovered, all of which show advanced <em>Homo erectus</em> characteristics: long and low in shape, with thick-bones and a distinctive brow-ridge. (Figure 4). As with the other Indonesian finds, dating the Ngandong material has been problematic.  The deposits at the site were originally thought to be around 100,000 years old, but this interpretation was turned on its head in 1996, when Swisher and colleagues claimed that the deposits were no older than between 27,000 and 53,000 years old (Swisher et al., 1996).  These age estimations were made on the associated fauna, however, and as Rainer Grün and the late Alan Thorne pointed out, the faunal material does not match the skulls either in color or in texture and is likely not from the same time.  Recently, Swisher and colleagues revisited the dating of the site and derived internally-consistent dates of at least 143,000 years before the present (Indriati et al., 2011).  As with the Trinil remains, however, there are no associated stone tools.  </p>

<h3><em>Homo erectus</em> in China</h3>

<p>The Chinese <em>Homo erectus</em> material is very widely scattered and working in the region has presented many difficulties for researchers in terms of transport, language barriers and funding.  Consequently, we know less about this region and its previous inhabitants than we do about most other areas of the Old World.  Although there are between ten and fifteen sites that have yielded <em>Homo erectus</em> material, I will only touch on the most important ones.  </p>

<h4><em>Lantian</em>:</h4>

<p class="caption-right"><img src="http://biologos.org/uploads/static-content/kidder_10_1_5.jpg" alt="" height="164" width="192"  /><br />Figure 5: Lantian</p>

<p>In the early 1960s, a cranium and mandible were found in the cave of Lantian, Shaanxi province, whose characteristics matched other remains from China designated as <em>Homo erectus</em>.  Paleomagnetic dating has yielded a date no earlier than 1.15 million years ago for the skull, with the consensus being that it is around 800,000 years old.  A date of approximately 650,000 years before the present was derived for the mandible. The cranium is heavily encrusted and suffered from postmortem deformation (Figure 5).  When reconstituted, it was found to have a capacity of around 780 cc (low for <em>Homo erectus</em>) and the bones on the sides of the head are the thickest yet recorded. At this site some flake tools, mammal remains, and an ash deposit were all recovered, suggesting hunting and control of fire.  </p>

<p class="caption-left"><img src="http://biologos.org/uploads/static-content/kidder_10_1_6.jpg" alt="" height="144" width="204"  /><br />Figure 5: Hexian</p>

<h4><em>Hexian</em></h4>
	
<p>Another almost-complete calvaria was found at Longtandong cave in the province of Hé Xiàn, dated to between 400,000 and 500,000 years ago.  This find exemplifies typical <em>Homo erectus</em> in many ways in that it is long and low, with heavy muscle markings toward the base and the rear of the skull (Figure 6).  The cranial capacity is around 1000 cc, a third-again greater than that of the Lantian calvaria.  Its cranial shape is very similar to those found in Southeast Asia, suggesting that it straddles the Southeast Asian and Chinese boundary.</p>

<p>While both Lantian and Hexian were significant finds, another site in China boasted the single largest collection of <em>Homo erectus</em> fossils ever found at one site, as well as presenting one of the greatest mysteries in paleoanthropology.  Tomorrow, in the conclusion of our look at <em>Homo erectus</em> in Asia, we’ll peer into the Zhoukoudian caves and consider how this species fits into the lineage of man.
</p>]]></content:encoded>
        <pubDate>Sun, 29 Jul 12 04:59:44 -0700</pubDate>
        <dc:creator>James Kidder</dc:creator>
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        <title>What evidence do we have for evolution besides fossils and genes?</title>
        <link>http://biologos.org/questions/what&#45;evidence&#45;do&#45;we&#45;have&#45;for&#45;evolution&#45;besides&#45;fossils&#45;and&#45;genes?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/questions/what&#45;evidence&#45;do&#45;we&#45;have&#45;for&#45;evolution&#45;besides&#45;fossils&#45;and&#45;genes?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Scientists have found multiple lines of evidence for evolution, not just one or two.  These types of evidence are independent of each other, coming from sources as different as ancient fossils and modern genetics labs. Evidence also comes from comparing the anatomy of creatures living today.  All creatures with four limbs (whether mammals, birds, or reptiles) have the same bone structure in each limb, pointing to their descent from a common ancestor. More evidence comes from biogeography.  Isolated islands are missing common species found on the mainland, but are filled with many unique species that can be related by a common ancestor. Finally, evidence comes from embryonic development.  As an embryo of a mammal grows, its heart develops through stages similar to fish, amphibians, and reptiles.  God’s creation declares the history of life in many different ways. All these ways are pointing to a consistent picture of God creating through evolution.</description>
        <content:encoded><![CDATA[<em>Coming soon.</em>]]></content:encoded>
        <pubDate>Fri, 13 Jul 12 13:25:46 -0700</pubDate>
        <dc:creator></dc:creator>
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        <title>The Fossil Record</title>
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        <guid>http://biologos.org/blog/the&#45;fossil&#45;record?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>There are two opposite errors which need to be countered about the fossil record: 1) that it is so incomplete as to be of no value in interpreting patterns and trends in the history of life, and 2) that it is so good that we should expect a relatively complete record of the details of evolutionary transitions within all or most lineages.</description>
        <content:encoded><![CDATA[<h3>The Fossil Record:  Is there enough evidence ?</h3>

<p>There are two opposite errors which need to be countered about the fossil record: 1) that it is so incomplete as to be of no value in interpreting patterns and trends in the history of life, and 2) that it is so good that we should expect a relatively complete record of the details of evolutionary transitions within all or most lineages.</p>

<p>What then is the quality of the fossil record?  It can be confidently stated that only a very small fraction of the species that once lived on Earth have been preserved in the rock record and subsequently discovered and described by <a onmouseover="toggle_visibility('pop1');" onmouseout="toggle_visibility('pop1');">science</a>.</p>

<div class="see-also" id="pop1" style="display:none;">A more expanded discussion of this topic can be found in Miller, K.B., 2003, “Common descent, transitional forms, and the fossil record,” IN, K.B. Miller (ed.), <em>Perspectives on an Evolving Crreation</em>, Wm. B. Eerdmans, Grand Rapids.</div>

<p>There is an entire field of scientific research referred to as "taphonomy" -- literally, "the study of death."   Taphonomic research includes investigating those processes active from the time of death of an organism until its final burial by sediment.  These processes include decomposition, scavenging, mechanical destruction, transportation, and chemical dissolution and alteration.  The ways in which the remains of organisms are subsequently mechanically and chemically altered after burial are also examined -- including the various processes of fossilization.  Burial and "fossilization" of an organism's remains in no way guarantees its ultimate preservation as a fossil.  Processes such as dissolution and recrystallization can remove all record of fossils from the rock.  What we collect as fossils are thus the "lucky" organisms that have avoided the wide spectrum of destructive pre- and post-depositional processes arrayed against them.</p>

<p>Soft-bodied organisms, and organisms with non-mineralized skeletons have very little chance of preservation under most environmental conditions.   Until the Cambrian nearly all organisms were soft-bodied, and even today the majority of species in marine communities are soft-bodied.  The discovery of new soft-bodied fossil localities is always met with great enthusiasm.  These localities typically turn up new species with unusual morphologies, and new higher taxa can be erected on the basis of a few specimens!  Such localities are also erratically and widely spaced geographically and in geologic time.</p>

<p>Even those organisms with preservable hard parts are unlikely to be preserved under "normal" conditions.  Studies of the fate of clam shells in shallow coastal waters reveal that shells are rapidly destroyed by scavenging, boring, chemical dissolution and breakage.  Occasional burial during major storm events is one process that favors the incorporation of shells into the sedimentary record, and their ultimate preservation as fossils.  Getting terrestrial vertebrate material into the fossil record is even more difficult.  The terrestrial environment is a very destructive one: with decomposition and scavenging together with physical and chemical destruction by weathering.</p>

<p>The potential for fossil preservation varies dramatically from environment to environment.  Preservation is enhanced under conditions that limit destructive physical and biological processes.  Thus marine and fresh water environments with low oxygen levels, high salinities, or relatively high rates of sediment deposition favor preservation.  Similarly, in some environments biochemical conditions can favor the early mineralization of skeletons and even soft tissues by a variety of compounds (eg. carbonate, silica, pyrite, and phosphate).  The likelihood of preservation is thus highly variable.  As a result, the fossil record is biased toward sampling the biota of certain types of environments, and against sampling the biota of others.</p>

<p>In addition to these preservational biases, the erosion, deformation and metamorphism of originally fossiliferous sedimentary rock have eliminated significant portions of the fossil record over geologic time.  Furthermore, much of the fossil-bearing sedimentary record is hidden in the subsurface, or located in poorly accessible or little studied geographic areas.  For these reasons, of those once-living species actually preserved in the fossil record, only a small portion have been discovered and described by science.  However, there is also the promise of continued new and important discovery.</p>

<p>The forces arrayed against fossil preservation also guarantee that the earliest fossils known for a given animal group will always date to some time after that group first evolved.  The fossil record always provides only minimum ages for the first appearance of organisms.</p>

<p>Because of the biases of the fossil record, the most abundant and geographically widespread species of hardpart-bearing organisms would tend to be best represented.  Also, short-lived species that belonged to rapidly evolving lines of descent are less likely to be preserved than long-lived stable species.  Because evolutionary change is probably most rapid within small isolated populations, a detailed species-by-species record of such evolutionary transitions is unlikely to be preserved.  Furthermore, capturing such evolutionary events in the fossil record requires the fortuitous sampling of the particular geographic locality where the changes occurred.</p>    

<p>Using the model of a branching tree of life, the expectation is for the preservation of isolated branches on an originally very bushy evolutionary tree.  A few of these branches (lines of descent) would be fairly complete, while most are reconstructed with only very fragmentary evidence.  As a result, the large-scale patterns of evolutionary history can generally be better discerned than the population-by-population or species-by-species transitions.  Evolutionary trends over longer periods of time and across greater anatomical transitions can be followed by reconstructing the sequences in which anatomical features were acquired within an evolving branch of the tree of life.</p>]]></content:encoded>
        <pubDate>Fri, 13 Jul 12 05:00:15 -0700</pubDate>
        <dc:creator>Keith Miller</dc:creator>
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        <title>What scientific evidence do we have about the first humans?</title>
        <link>http://biologos.org/questions/what&#45;scientific&#45;evidence&#45;do&#45;we&#45;have&#45;about&#45;the&#45;first&#45;humans?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/questions/what&#45;scientific&#45;evidence&#45;do&#45;we&#45;have&#45;about&#45;the&#45;first&#45;humans?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In recent decades, scientists have discovered more about the beginnings of humanity.  The fossil record shows a gradual transition over 5 million years ago from chimpanzee&#45;size creatures to hominids with larger brains who walked on two legs.   Later hominids used fire and stone tools and had brains as large as modern humans.  Fossils of homo sapiens in east Africa date back nearly 200,000 years.  Humans developed hearths for fire, stone points for spears and arrows, and cave paintings by 30,000 years ago.   By 10,000 years ago, humans had spread throughout the globe.   Genetic studies support the same picture.  Humans share more DNA with chimpanzees than with any other animal, suggesting that humans and chimps share a relatively recent common ancestor.  Also, the same defective genes appear in both humans and chimps, at the same locations in the genome—an observation difficult to explain except by common ancestry. Genetics also tells us that the human population today descended from more than two people. Evolution happens not to individuals but to populations, and the amount of genetic diversity in the gene pool today suggests that the human population was never smaller than several thousand individuals.  Yet all humans, of all races, are descended from this group.  Humanity is one family.</description>
        <content:encoded><![CDATA[<em>Coming Soon</em>]]></content:encoded>
        <pubDate>Thu, 12 Jul 12 14:34:24 -0700</pubDate>
        <dc:creator></dc:creator>
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        <title>Naming &apos;the God Particle&apos;</title>
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        <guid>http://biologos.org/blog/naming&#45;the&#45;god&#45;particle?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>The discovery of the Higgs boson would certainly be a breakthrough for particle physics and cosmology, but would such a finding also radically redefine theology’s understanding of God or challenge the existence of such a deity?  Is there actually any theological or religious significance in Higgs physics at all?</description>
        <content:encoded><![CDATA[<p class="date"> The image above describes an "event" (proton-proton collision) recorded in 2012 with the CMS detector at CERN's Large Hadron Collider. According to CERN, "the event shows characteristics expected from the decay of the SM Higgs boson to a pair of Z bosons, one of which subsequently decays to a pair of electrons (green lines and green towers) and the other Z decays to a pair of muons (red lines). The event could also be due to known standard model background processes. ATLAS Experiment © 2012 CERN </p>


<p>Judging from the flurry of headlines over the past week, one might be tempted to think that proof positive of God’s existence (or lack thereof) had just appeared out of a 27-km-tunnel buried beneath the Swiss-French border. This frenzy of news headlines and blog titles hailed the recent news that CERN’s Large Hadron Collider has discovered a brand new particle of a mass of 125-126 GeV, which is assumed to be the Higgs boson, or the so-called “God particle.” The discovery of the Higgs boson would certainly be a breakthrough for particle physics and cosmology, but would such a finding also radically redefine theology’s understanding of God or challenge the existence of such a deity?  Is there actually any theological or religious significance in Higgs physics at all?</p>

<p>The short answer is “no,” which becomes apparent when one considers the widely-reported story of how it got named. In 1993, Nobel Laureate physicist Leon Lederman, along with science writer Dick Teresi, wrote a book detailing the history of particle physics starting with Pre-Socratic Greek philosophy Democritus and culminating with the hunt for the Higgs boson. Until this latest discovery, the Higgs boson was the elusive final missing piece of the puzzle known as the Standard Model—a collection of the fundamental particles that constitute our universe and the complex and mathematically-sophisticated relationships between them. Considering how incredibly difficult finding the Higgs boson was proving to be, Lederman wanted to name the book after that “goddamn particle,” according to some of his collaborators. His editor, however, would not allow it and so the name was shortened to “The God Particle: If the Universe Is the Answer, What is the Question?” And thus ‘the God particle’ was born, carrying with it more than enough social baggage for such a miniscule particle.</p>

<img src="http://biologos.org/uploads/static-content/Zosia_Krusberg.jpg" alt="" height="340" width="250" style="float:right;margin:0px 0px 0px 10px;"  />

<p>Particle physicist Dr. Zosia Krusberg (at right) is visiting assistant professor of physics and astronomy at Vassar College and thinks “the term ‘god particle’ is unfortunate. The Higgs boson is no more (or less) divine or spiritually significant than any other elementary particle within the standard model of particle physics.” It may be fundamental to explaining one of the most basic characteristics of the universe—namely the existence of matter and mass in addition to energy—but “it is no more (or less) important than any other physics principle underlying the Standard Model.” </p> 

<p>Last week’s discovery was monumental in that it may have finally provided experimental evidence for the Higgs Mechanism and defined the specific energy of the resulting Higgs boson, but even this “breakthrough” for particle physics leaves many scientific questions unresolved. Finding the Higgs boson completes the Standard Model, but it does not do away with many other questions and shortcomings of the current state of particle physics, such as the constituent particles of dark matter, a quantum theory of gravity, and other “mathematically subtle problems.” Not to mention that there is still significant work to be done to determine the exact nature of this newly-found particle. According to Dr. Krusberg, this particle might behave just as the Standard Model predicts or it could instead be “a Higgs-like particle that will serve as a gateway into explorations of physics beyond the Standard Model." Krusberg continued, “And I guarantee that it is this latter scenario that most of us are hoping for: physicists love nothing more than discovering the shortcomings of their theories, since this is the first step toward more fundamental theories with even more predictive power!”</p>

<p>No, finding the Higgs boson does not answer all the questions of particle physics, much less lend insight into the existence (or not) of God.  For that reason, Dr. Krusberg (like most physicists) bemoans the term ‘God particle’ and insists, “There really is nothing either literally or metaphorically god-like about the Higgs boson.”  Indeed, one writer for the British journal The Guardian reached such a point of frustration about the name that he ran a <a href="http://www.guardian.co.uk/science/blog/2009/jun/05/cern-lhc-god-particle-higgs-boson ">competition for alternatives</a>. The winner was “the champagne flute boson,” ostensibly because the bottom of a champagne bottle is an excellent and oft-used demonstration of the energy potential of the Higgs Mechanism. Or then again, perhaps it is simply because physicists thought that finally finding this shy particle would call for some of the bubbly.</p>

<p>On the other hand, some science writers and scientists can appreciate the ‘educational benefits’ of such a mysterious and controversial name because it attracts the attention of the general public and puts a relatable face on an extremely esoteric physics concept. Krusberg herself admits that “People are naturally drawn to the mysterious and the controversial, providing educators with great teaching opportunities.” But she worries about the larger social implications involved in “mixing the vernacular of physics and spirituality,” not least because such uncritical mixing can lead the non-scientific community to draw conclusions about the authority and reach of science that are not justified.</p>

<p>Understanding that the Higgs boson is not the literal stuff of God and that it does not prove or disprove God’s existence (as the name seems to suggest) extinguishes the fire under any sort of religious outcry. But this does not mean that its discovery is irrelevant to the discussion of science and faith, nor to the Christian community as a whole. As Dr. Krusberg remarks, “The recent discovery of [this] new boson at the LHC perfectly embodies the scientific process at its best (and thereby illustrates to the public why and how science works).” Scientific exploration of nature is not a fool-proof endeavor; healthy skepticism and accountability to a wide community of other researchers are absolutely critical to its success. But such evidence of the power and finesse of well-executed science as we saw last week is a testament to our ability to explore and understand the ‘how’ of the universe. God has equipped humanity with the desire, the intellectual abilities, and the collective will to recognize and explore the cosmic order and beauty of his creation. God has made our home knowable, and has given us the tools and capacities by which to know it.</p>

<img src="http://biologos.org/uploads/static-content/Tucker_Higgs_2_sm.jpg" alt="" height="194" width="300" style="float:left;margin:0px 10px 0px 0px;" />

<p class="date"> At left, Cern researchers present their findings to a few hundred of their colleagues in Melbourne, Australia.  Image © 2012 CERN </p>

<p>It is valuable, then, for the Christian community to understand and appreciate how science works, in part to recognize that there are many instances in which science and the church work in tandem in order to better understand and better serve the world. But I think there is something else we can draw from the story of the Higgs boson, too. The nickname ‘the God particle’ has touched nerves in religious communities because it implies that science has the ability to prove or disprove divine existence by physical means.  Even though the physics community is by no means claiming insight into the divine, it is sometimes assumed by the religious community that scientists view their work as chipping away at God’s existence when they begin to understand something that was previously unknown, or known only “by faith” in esoteric theories and models.</p>

<p>And yet, regardless of motives or metaphysical interpretations, perhaps physicists' search for the Higgs boson <em> is in fact</em> an apt picture of our own search for God.  How many times have we stared up at the starry ceiling in times of crisis and prayed fervently for some kind of sign from God to assure us of his presence? And how many times has that much-desired evidence appeared only in retrospect, when we look back to see God’s hand faithfully and elegantly working in ways inscrutable at the time? It took a <em>community</em> of physicists to discern the presence of the Higgs boson. But even so, they could only do so after the fact from the cascade of particle decays it sparked; they could not observe the particle itself directly. In a similar way, though we often do not see the working of God directly, “in the moment,” we still trust in his presence and providence, often depending on friends, family and the community of the church to help us see his hand in hindsight.  </p>

<p>So while the discovery of the Higgs boson does not itself explain God, we rejoice at the subtle yet striking new insight we have into God’s creative genius via the Higgs boson and at the way God gives evidence of his faithfulness in the ordered creation itself. Perhaps, however, the greatest insight we can glean from this breakthrough is an analogy for the way God calls us to seek him and find him together, in the community of those who follow his son.</p>

<p class="intro"> Tomorrow, Baylor University physicist Gerald Cleaver answers the question, "What <em>is </em>the Higgs boson?"</p><br> </br>

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        <pubDate>Tue, 10 Jul 12 09:02:29 -0700</pubDate>
        <dc:creator>Faith Tucker</dc:creator>
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        <title>Being Fruitful</title>
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        <description>Many people use the words &quot;dominion&quot; and &quot;subdue&quot; as &quot;unconditional permission to use the world as they please.&quot; I came to realize, like many, that such an interpretation is contradicted by the rest of the Bible.</description>
        <content:encoded><![CDATA[<p class="intro">A version of Lipford's essay originally appeared in <em>First Things First</em>, the newsletter of First Baptist Church of Richmond.</p>

<p>Along the side of our patio in front of our family garden, I grow grapes.  I was inspired to grow them from the tradition of my mother's homeland in Cyprus, where grapes, olives, figs and lemons adorn the patios of each house.  I was challenged to grow them well by the words of Jesus in John 15: "I am the vine, you are the branches, I will prune you to produce much fruit."  Pruning is the secret to successful grapes, but that's another story.</p>

<p>The point is that in tending that grape arbor and our family garden, and exploring the beautiful landscapes we are blessed with in Virginia, my wife Elizabeth and I, along with our three daughters, are in communion with the Creator and Sustainer of heaven and earth.  That may sound like a lofty statement, but for me, nature, His created order, is where I find Him most personally. I have known and recognized this since I was a boy.</p>

<p>Though born in Richmond, I was raised in Portsmouth, Virginia, where my father and I would fish along the Elizabeth River and the Chesapeake Bay.  With my friends, I hunted in the Great Dismal Swamp.  My father grew up on my Grandpa's farm in Tennessee near Bristol and he took our family back there often.  My grandfather was one of those vanishing breeds of men who had fidelity and love for the land.  He was dependent on the land for his food and a few cash crops for income.  He was intimately tied to the rhythms of the seasons and his work in the fields.</p>
  
<p>My grandfather and my aunts and uncles looked at this work as a partnership with the Lord.  They taught me how to care for the land, as well as the names of plants that grew in the forests and along the streams that surrounded their farms.  They also taught me skills that made me appreciate their way of life. Through these early experiences, I became fascinated with an essential question: What makes nature tick?  I also developed an interest in the spiritual relationship between God and His creation.  And so the journey began.</p>

<p>I took up the study of biology at Virginia Tech focusing on stream ecology, and then worked as a field biologist surveying rivers throughout the Southeast.  Eventually, I returned to graduate school to study forest ecology in the Shenandoah National Park.  My faith in the biblical account of creation was challenged by professors who taught evolution as the mode of creation of living things.</p>

<p>This challenge I brushed aside until I began teaching biology at a community college in Clifton Forge.  The words in the textbooks and the words of Genesis took on new meaning.  Did they contradict each other?  Could all forms of life really evolve by chance?   Weren't we created in His image?   My students questioned me about this conflict and I started a search for the answers.</p>

<p>For several years I wrestled with these questions as an intellectual exercise.   I began to make progress only when I started answering with my heart along with my head, aided by that other gift received from my parents, trust in the power of prayer.  Looking back, this doubt and questioning, this need to have all the answers, made my faith real exactly as it taught me that I <em>don't</em> need to have all the answers: that is where faith comes in.</p>

<p>I do know with certainty that God created the heavens and the earth, and manages and sustains His creation even today.   I cannot know with certainty how He did it with such precision and beauty.   How God created is still a mystery that science, by its methods, tries to discover and cannot fully explain, and one that the Bible is mostly silent on.</p>

<p>To me, there should be no contradiction between science and the Bible.  In the beginning, God was there and science cannot speak to that.  It is by faith that I know that God created the world not by chance, but for his purposes and glory.  The precision of natural order and its beauty have always focused me on the Creator, just as Paul states in Romans that all creation bears witness to God. The more I study nature and natural sciences, the more it drives me back to God who made all things.</p>

<p>In time, I was hired by The Nature Conservancy in Richmond as the ecologist and director of a new biological inventory for Virginia.  Then another faith question came.  Why did the Church not speak to the Christian practice of stewardship as it relates to creation?  Why did many in my profession worship the creation and not the Creator?</p>

<p>I stumbled upon the work of Wendell Berry, who has since become one of my favorite authors.  In a short essay he wrote in 1988 entitled <em>God and Country</em>, he said we must deal with the true meaning of Genesis 1:28 where God told Adam and Eve to "be fruitful and multiply and replenish the earth and subdue it."  He was right.  Berry noted that many people use the words "dominion" and "subdue" as "unconditional permission to use the world as they please."  I came to realize, like many, that such an interpretation is contradicted by the rest of the Bible.</p>

<p>The ecological teaching of the Bible is clear.  God made the world and it pleased Him.  It is His and He loves it.  He has never given up title to it.  He wants us to take excellent care of it.  In Genesis we see it in His instructions to Adam and Eve in the Garden; in Leviticus 20, we see it in the Sabbath year and the Jubilee—laws governing land use, land rest and God's ownership of the land; in Psalm 24 David affirms "the earth is the Lord's and everything in it"; Jesus, in Matthew 6, tells us not to worry, for if God cares for the birds and plants, he'll also care for you; and in Romans 8:19, Paul says the creation eagerly awaits freedom when right relationships will be restored.</p>

<p>Biblical ecology is really a moral understanding of what God expects of us in relation to the natural world, but also in relation to the other people with whom we share it.  This kind of stewardship has only been recently talked about in the Church.  It means careful management, not destruction and abuse.  It is infinitely practical because a healthy planet is in our best interest (we depend on its fruitfulness, after all), but biblical stewardship is also an act of loving our neighbors as ourselves, of loving even our children and grandchildren, by leaving them a decent place to live.</p>

<p>Psalm 8 lays out a mystery that, with the rest of Scripture in mind, invites a response in action as well as praise:  "When I consider the heavens, the work of your fingers, the moon and stars you have ordained, what is man that you are mindful of him?" After more than 20 years with The Nature Conservancy in Richmond, Elizabeth and I have made a home for our family and have a church home, as well—all places in which we can respond to that mystery by bearing fruit. And though my answering the call to use my talents and time in each of those realms branches in many directions, it is always rooted in my awe of God, who created and sustains the universe <em>and</em> seeks a relationship with us.  It is a call I live out in my vocation of protecting and restoring the lands and waters in Virginia, and a call our family lives out in our garden, in our frequent excursions in the outdoors, our worship of the Lord in church and at home, and, yes, even in growing grapes.</p>]]></content:encoded>
        <pubDate>Tue, 12 Jun 12 08:00:11 -0700</pubDate>
        <dc:creator>Michael Lipford</dc:creator>
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        <title>What is Scientism?</title>
        <link>http://biologos.org/blog/what&#45;is&#45;scientism?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/what&#45;is&#45;scientism?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Scientism is a rather strange word, but for reasons that we shall see, a useful one. Though this term has been coined rather recently, it is associated with many other “isms” with long and turbulent histories: materialism, naturalism, reductionism, empiricism, and positivism.</description>
        <content:encoded><![CDATA[<img src="http://biologos.org/uploads/static-content/SaintSimonResized.jpg" alt="" height="224" width="161" style="float:left; margin:0px 10px 0px 0px;"/><p>&nbsp;</p><p>&nbsp;</p>
<blockquote>A scientist, my dear friends, is a man who foresees; it is because science provides the means to predict that it is useful, and the scientists are superior to all other men. --Henri de Saint-Simon<sup>1</sup></blockquote>
<p>&nbsp;</p><p>&nbsp;</p><p>&nbsp;</p>

<p>Scientism is a rather strange word, but for reasons that we shall see, a useful one. Though this term has been coined rather recently, it is associated with many other “isms” with long and turbulent histories: materialism, naturalism, reductionism, empiricism, and positivism. Rather than tangle with each of these concepts separately, we’ll begin with a working definition of scientism and proceed from there.</p>

<p>Historian Richard G. Olson defines scientism as “efforts to extend scientific ideas, methods, practices, and attitudes to matters of human social and political concern.” <sup>2</sup>  But this formulation is so broad as to render it virtually useless. Philosopher Tom Sorell offers a more precise definition: “Scientism is a matter of putting too high a value on natural science in comparison with other branches of learning or culture.” <sup>3</sup>  MIT physicist Ian Hutchinson offers a closely related version, but more extreme: “Science, modeled on the natural sciences, is the only source of real knowledge.” <sup>4</sup>  The latter two definitions are far more precise and will better help us evaluate scientism’s merit.</p>

<h3>A History of Scientism</h3>

<p>The roots of scientism extend as far back as early 17th century Europe, an era that came to be known as the Scientific Revolution. Up to that point, most scholars had been highly deferential to intellectual tradition, largely a combination of Judeo-Christian scripture and ancient Greek philosophy. But a torrent of new learning during the late Renaissance began to challenge the authority of the ancients, and long-established intellectual foundations began to crack. The Englishman Francis Bacon, the Frenchman Rene Descartes, and the Italian Galileo Galilei spearheaded an international movement proclaiming a new foundation for learning, one that involved careful scrutiny of nature instead of analysis of ancient texts.</p>

<img src="http://biologos.org/uploads/static-content/descartesresized.jpg" alt="" height="252" width="204" style="float:right; margin:0px 0px 0px 10px;" /><p>Descartes and Bacon used particularly strong rhetoric to carve out space for their new methods. They claimed that by learning how the physical world worked, we could become “masters and possessors of nature.” <sup>5</sup> In doing so, humans could overcome hunger through innovations in agriculture, eliminate disease through medical research, and dramatically improve overall quality of life through technology and industry. Ultimately, science would save humans from unnecessary suffering and their self-destructive tendencies. And it promised to achieve these goals in this world, not the afterlife. It was a bold, prophetic vision.</p>

<p>As this new method found great success, the specter of scientism began to emerge. Both Bacon and Descartes elevated the use of reason and logic by denigrating other human faculties such as creativity, memory, and imagination. Bacon’s classification of learning demoted poetry and history to second-class status.<sup>6</sup> Descartes’ rendering of the entire universe as a giant machine left little room for the arts or other forms of human expression. In one sense, the rhetoric of these visionaries opened great new vistas for intellectual inquiry. But on the other hand, it proposed a vastly narrower range of which human activities were considered worthwhile.</p>

<h4>The Enlightenment</h4>

<p>A century later, many of the Enlightenment intellectuals continued their love-affair with the power of natural science. They claimed that not only could science enhance the quality of human life, it could even promote moral improvement. The Encyclopedist Denis Diderot aimed to collect, organize, and preserve all human knowledge so that “our children, becoming better instructed, may become at the same time more virtuous and happy.” <sup>7</sup> Many of the French philosophes even claimed that science could be a substitute for religion. In fact, during the French Revolution, numerous Catholic churches were converted into “Temples of Reason” and held quasi-religious services for the worship of science.<sup>8</sup></p>

<h4>Positivism</h4>

<p>The 19th century witnessed the most powerful and enduring formulation of scientism, a system called positivism. Its founder was August Comte, who built his positive philosophy from a deep commitment to David Hume’s empiricism and skepticism. Comte claimed that the only valid data is acquired through the senses. Nothing was transcendent, and nothing metaphysical could have any claim to validity.<sup>9</sup> The task of scientists was twofold—first, to demonstrate how all phenomena, including human behavior, are subject to invariable natural laws.<sup>10</sup> Second, they would reduce these natural laws to the smallest possible number, and ultimately unify them under the laws of physics.<sup>11</sup></p>

<p>Comte also subsumed all of human intellectual history into a single process which he called the Law of Three Stages. In his view, each branch of knowledge passes through three stages: the theological or fictitious, the metaphysical or abstract, and lastly the scientific or positive state. He believed that through the continual advancement of human understanding, religion would fade away, philosophy and the humanities would be transformed into a naturalistic basis, and all human knowledge would eventually become a product of science. Any ideas outside that realm would be pure fantasy or superstition.</p>

<h4>Logical Positivism</h4>

<img src="http://biologos.org/uploads/static-content/ruler2.jpg" alt="" height="188" width="250" style="float:left;margin:0px 10px 0px 0px;" /><p>Positivism did not lose its appeal in the 20th century. To the contrary, a group known collectively as The Vienna Circle reinvigorated the fundamental tenets of positivism with enhanced symbolic logic and semantic theory. They called their approach, fittingly, logical positivism. In this system, there are only two kinds of meaningful statements: analytic statements (including logic and mathematics), and empirical statements, subject to experimental verification. Anything outside of this framework is an empty concept.<sup>12</sup></p>

<p>Given its sweeping claims, logical positivism came under heavy scrutiny. Karl Popper pointed out that few statements in science can actually be completely verified. However, a single observation has the potential to invalidate a hypothesis, and even an entire theory. Therefore, he proposed that instead of experimental verification, the principle of falsifiability should demarcate what qualified as science, and by extension, what can qualify as knowledge.<sup>13</sup></p>

<p>Another weakness of the positivist position is its reliance on a complete distinction between theory and observation. Observations, essential to the empirical approach of science, were claimed by positivists to be brute facts which one could use to establish, evaluate, and compare the theories. However, W.O. Quine pointed out in his “Two Dogmas of Empiricism” that observations themselves are partly shaped by theory (“theory-laden”).<sup>14</sup> What counts as an observation, how to construct an experiment, and what data you think your instruments are collecting—all require an interpretive theoretical framework. This realization does not deal a death-blow to the practice of science (as some post-modernists like to claim), but it does undermine the positivist claim that science rests entirely on facts, and is thus an indisputable foundation for knowledge.</p>

<h3>Scientism of Today</h3>

<p>Scientism today is alive and well, as evidenced by the statements of our celebrity scientists:</p>

<img src="http://biologos.org/uploads/static-content/nasa_resized.jpg" alt="" height="263" width="264" style="float:right;margin:0px 0px 0px 10px;" />
<blockquote>The Cosmos is all that is or ever was or ever will be. –Carl Sagan, Cosmos<br /><br />

The more the universe seems comprehensible, the more it also seems pointless. –Stephen Weinburg, The First Three Minutes<br /><br />

We can be proud as a species because, having discovered that we are alone, we owe the gods very little. –E.O. Wilson, Consilience</blockquote>

<p>While these men are certainly entitled to their personal opinions and the freedom to express them, the fact that they make such bold claims in their popular science literature blurs the line between solid, evidence-based science, and rampant philosophical speculation. Whether one agrees with the sentiments of these scientists or not, the result of these public pronouncements has served to alienate a large segment of American society. And that is a serious problem, since scientific research relies heavily upon public support for its funding, and environmental policy is shaped by lawmakers who listen to their constituents. From a purely pragmatic standpoint, it would be wise to try a different approach.</p>

<p>Physicist Ian Hutchinson offers an insightful metaphor for the current controversies over science:</p>

<blockquote>The health of science is in fact jeopardized by scientism, not promoted by it. At the very least, scientism provokes a defensive, immunological, aggressive response from other intellectual communities, in return for its own arrogance and intellectual bullyism. It taints science itself by association.<sup>15</sup></blockquote>

<p>Noting that most Americans enthusiastically welcome scientific advancements, particularly those in health care, transportation, and communications, Hutchinson suggests that perhaps what the public is rejecting is not actually science itself, but a worldview that closely aligns itself with science—scientism.<sup>16</sup> By disentangling these two concepts, we have a much better chance for enlisting public support for scientific research than we would by trying to convince millions of people to embrace a materialistic, godless universe in which science is our only remaining hope.</p>

<h3>Distinguishing science from scientism</h3>

<p>So if science is distinct from scientism, what is it? Science is an activity that seeks to explore the natural world using well-established, clearly-delineated methods. Given the complexity of the universe, from the very big to very small, from inorganic to organic, there is a vast array of scientific disciplines, each with its own specific techniques. The number of different specializations is constantly increasing, leading to more questions and areas of exploration than ever before. Science expands our understanding, rather than limiting it.</p>

<img src="http://biologos.org/uploads/static-content/Gears_large.jpg" alt="" height="340" width="250" style="float:left;margin:0px 10px 0px 0px;" /><p>Scientism, on the other hand, is a speculative worldview about the ultimate reality of the universe and its meaning. Despite the fact that there are millions of species on our planet, scientism focuses an inordinate amount of its attention on human behavior and beliefs. Rather than working within carefully constructed boundaries and methodologies established by researchers, it broadly generalizes entire fields of academic expertise and dismisses many of them as inferior. With scientism, you will regularly hear explanations that rely on words like “merely”, “only”, “simply”, or “nothing more than”. Scientism restricts human inquiry.</p>

<p>It is one thing to celebrate science for its achievements and remarkable ability to explain a wide variety of phenomena in the natural world. But to claim there is nothing knowable outside the scope of science would be similar to a successful fisherman saying that whatever he can't catch in his nets does not exist.<sup>17</sup> Once you accept that science is the only source of human knowledge, you have adopted a philosophical position (scientism) that cannot be verified, or falsified, by science itself. It is, in a word, unscientific.</p>

 <h3>Notes</h3>

<p class="date">1. "<em>Un savant, mes amis, est un homme qui prévoit; c’est par la raison que la science donne le moyen de prédire qu’elle est utile, et que les savants sont supérieurs à tous les autres hommes.</em>"  Translated into English by Valence Ionescu in <em>The Political Thought of Saint-Simon</em>. Oxford University Press, 1976.  Page 76<br>

2. Olson, Richard G. <em>Science and Scientism in Nineteenth-Century Europe</em>. Urbana, University of Illinois Press, 2008.<br>

3. Sorell, Tom. <em>Scientism: Philosophy and the Infatuation with Science</em>. New York: Routledge, 1991.<br>

4. Hutchinson, Ian. <em>Monopolizing Knowledge: A Scientist Refutes Religion-Denying, Reason-Destroying Scientism</em>. Belmont, MA: Fias Publishing, 2011.<br>

5. Descartes, Rene. <em>Discourse on Method</em><br>

6. Sorell, p176<br>

7. Sorell, p35<br>

8. Ozouf, Mona. <em>Festivals and the French Revolution</em>. Harvard University Press, 1988.<br>

9. Zammito, John H. A Nice Derangement of Epistemes : Post-Positivism in the Study of Science from Quine to Latour. Chicago: University of Chicago Press, 2004.<br>

10. This view is a form of strict determinism, and current popularizers of continue to enthusiastically endorse it. Perhaps they are “determined” to do so?<br>

11. This view is a form of extreme reductionism, also widely endorsed by current popularizers of science.<br>

12. Zammito, p8<br>

13. Popper, Karl. <em>Logic of Scientific Discovery.</em> 1959<br>

14. For an extended discussion, read Zammito’s chapter “The Perils of Semantic Ascent: Quine and Post-positivism in the Philosophy of Science” in <em>A Nice Derangement of Epistemes</em>. University of Chicago Press, 2004.<br>

15. Hutchinson, p143<br>

16. Hutchinson, p109<br>

17. Giberson, Karl, and Mariano Artigas. <em>Oracles of Science: Celebrity Scientists Versus God and Religion</em>. Oxford: Oxford University Press, 2009.</p> ]]></content:encoded>
        <pubDate>Mon, 11 Jun 12 05:00:14 -0700</pubDate>
        <dc:creator>Thomas Burnett</dc:creator>
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        <title>The Transit of Venus</title>
        <link>http://biologos.org/blog/the&#45;transit&#45;of&#45;venus?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/the&#45;transit&#45;of&#45;venus?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Today we have a chance to witness a special moment in history as Venus transits across the disk of the Sun for people across the world to see.  Not only is this process of discovery exciting for natural science, but it has profound theological ramifications as well.</description>
        <content:encoded><![CDATA[<p>Today we have a chance to witness a special moment in history as Venus transits across the disk of the Sun for people across the world to see.  This rare astronomical occurrence may have been witnessed by Montezuma in 1520, was first predicted by Johannes Kepler in 1631, launched Captain James Cook’s expedition around the world in 1768, helped us determine the Earth's distance from the Sun in the 1882, and will not occur again until 2117. </p>

<p>The astronomy community is particularly interested in this event because <a href="http://en.wikipedia.org/wiki/Exoplanet">exoplanets</a> throughout the Milky Way galaxy regularly transit their parent stars in just the same way. This local example will allow astronomers to test and refine techniques used to determine the composition of these exoplanets' atmospheres, providing insight into whether these distant planets could possibly harbor life. </p>

<p>As Venus begins to cross in front of the disk of the Sun, Venus's atmosphere will refract the Sun's light, illuminating the backlit portion of the planet's atmosphere. Telescopes on the ground and in orbit will be trained on this thin arc of atmosphere lit up by the Sun. Astronomers will use spectrometers to break the light up into its constituent colors, from which they can determine the chemical composition of our over-heated sister planet's atmosphere. Once perfected, this same technique can be used to examine the atmospheres of planets far beyond our own solar system, offering us one of our best clues as to the habitability of these distant worlds.</p>

<p>Not only is this process of discovery exciting for natural science, but it has profound theological ramifications as well.  Surely a God capable of orchestrating both the majestic swirls of a spiral galaxy and the intricate language of DNA could bring forth life where and when He chooses, but only now are we on the verge of being able to answer the age-old question: “Did God confine His creative life-giving actions to our own planet, or does His abundant fertility extent far beyond our limited experience?” </p>

<p>In 1882, William Harkness, the Director of the U.S. Naval Observatory, was one of two astronomers to determine from the transit of Venus the distance from Earth to the Sun. Just as previous viewers could never have imagined calibrating the scale of the solar system from such an event, Harkness could not predict its importance in 2004 and 2012 (the most recent Venus transits).  As we look to the future, we can hardly imagine what new frontiers the next Venus transit of 2117 will find us exploring.</p>

<div class="see-also">"We are now on the eve of the second transit of a pair, after which there will be no other till the twenty-first century of our era has dawned upon the earth, and the June flowers are blooming in 2004. . . . What will be the state of science when the next transit season arrives God only knows. Not even our children's children will live to take part in the astronomy of that day. As for ourselves, we have to do with the present ..." ~William Harkness, the Director of the U.S. Naval Observatory, quoted in 1882 (source: NASA.gov)</div>

<img src="http://biologos.org/uploads/static-content/Transit_of_Venus2.jpg" alt="" height="304" width="570"  /><br></br>

<p class="intro">The image above shows Venus on the eastern limb of the Sun during the 2004 transit.  As described in Tucker's essay, the faint ring around the planet comes from the scattering of light through its atmosphere, which allows some sunlight to show around the edge of the otherwise dark planetary disk. The faint glow on the disk is an effect of the TRACE telescope through which the image was captured. For more on the historical significance of the transits of Venus (including the voyage of Captain James Cook), see this <a href="http://science.nasa.gov/science-news/science-at-nasa/2012/02jun_jamescook/">article</a> from NASA, which also includes links to several live webcasts of today's transit.</p><br>
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        <pubDate>Tue, 05 Jun 12 11:47:56 -0700</pubDate>
        <dc:creator>Faith Tucker</dc:creator>
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