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        <title>Custom Feed &#45; The BioLogos Forum</title>
    <link>http://biologos.org/resources/find/any/Atheism &amp; Scientism,ID Movement/sort&#45;by&#45;Newest?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
    <description>This is a custom feed of BioLogos resources. Make a new feed at http://biologos.org/resources/find</description>
    <dc:language>en</dc:language>
    <dc:rights>Copyright 2013</dc:rights>
    <dc:date>2013-05-22T04:14:43-08:00</dc:date>    
    
    

            
            
        
      <item>
        <title>Evolution, the Enlightenment, and Worldviews</title>
        <link>http://biologos.org/blog/evolution&#45;the&#45;enlightenment&#45;and&#45;worldviews?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/evolution&#45;the&#45;enlightenment&#45;and&#45;worldviews?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In this video conversation, N.T. Wright discusses how the Enlightenment worldview &#45;&#45; which clearly separates God from the world &#45;&#45; has impacted our view of Scripture, and why cleaning the &quot;spectacles&quot; through which we view the world can help us see both Scripture and the world more clearly.</description>
        <content:encoded><![CDATA[<p>In the video above, N.T. Wright discusses how the Enlightenment worldview -- which clearly separates God from the world -- has impacted our view of Scripture, and why cleaning the "spectacles" through which we view the world can help us see both Scripture and the world more clearly. In contrast to the Enlightenment, most other worldviews present a more fluid and messy interrelationship between God and the world. According to Wright, we need to learn how to navigate this fluid, messy relationship in order to learn how to read the Bible.</p>
]]></content:encoded>
        <pubDate>Fri, 08 Feb 13 11:11:50 -0800</pubDate>
        <dc:creator>N.T. Wright</dc:creator>
        <!--<dc:date>Feb 08, 2013 11:11</dc:date>-->
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            <item>
        <title>Science and the Bible: Assessing the Evangelical Encounter with Evolution</title>
        <link>http://biologos.org/blog/science&#45;and&#45;the&#45;bible&#45;assessing&#45;the&#45;evangelical&#45;encounter&#45;with&#45;evolution?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/science&#45;and&#45;the&#45;bible&#45;assessing&#45;the&#45;evangelical&#45;encounter&#45;with&#45;evolution?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Having now completed our study of the five main views about “Science and the Bible” held by conservative Protestants, I conclude with a final column, assessing the whole situation as I see it today.</description>
        <content:encoded><![CDATA[<p>Having now completed our study of the five main views about “Science and the Bible” held by conservative Protestants, I conclude with a final column, assessing the whole situation as I see it today. </p>

<p>For more than a century, evangelicals and fundamentalists have typically rejected both evolution and higher biblical criticism. Sometimes there are good reasons: the claims of some biblical scholars are so outrageous and the claims of some scientists so anti-religious, that a strongly negative response is entirely appropriate. Too often, however, the evangelical encounter with modern science conforms to what <a href=" http://www.youtube.com/watch?v=eQviXavl1BA">historian Mark Noll</a> has called “the scandal of the evangelical mind”—namely, “that there is not much of an evangelical mind.” Attitudes toward science have been crucial to this analysis. As Noll says, “since 1960 creationism has done more than any other issue except abortion to inflame the cultural warfare in American public life.” (p. 192) </p>

<p>Readers who want to know more about Noll’s book and its reception should go <a href="http://www.liberalevangelical.org/index.php?option=com_content&view=article&id=144:the-scandal-of-the-evangelical-mind-by-mark-noll&catid=68:reviews-recent-a-relevant&Itemid=123">here</a> and <a href="http://www.firstthings.com/article/2008/08/003-the-scandal-of-the-evangelical-mind-a-symposium-33">here</a>. His conclusions about evangelicals and science are fully consistent with those I am about to present.</p>

<h3>Evangelicals in Tension with Science</h3>

<p>Evangelicals exhibit <em><strong>considerable tension and ambivalence</strong></em> when it comes to science, especially human evolution. On the one hand, evangelicals enthusiastically embrace the findings of science, when it comes to most applications in medicine and engineering. They also accept the experimental sciences, such as physics, chemistry, physiology, or thermodynamics. They have no problems with gravitation, the periodic table, the circulation of the blood, or the law of entropy. Here, their attitude is highly empirical: if it can be shown from repeatable experiments and observations, it’s true and presents no challenge whatsoever to religious belief.</p>

<p>On the other hand, evangelicals are quite hesitant to accept some conclusions of the so-called historical sciences, such as geology, cosmology, and evolutionary biology. Fundamentalists reject the very legitimacy of those sciences, and have created their own alternative explanation, “creation science,” which comports with their particular views of biblical authority and hermeneutics. Evangelicals are more ambivalent. As we’ve seen, many evangelicals accept the big bang and modern geology, with a 4.65 billion-year-old earth and the enormously long history of living things before humans arrived on the planet. But evolution–understood here to mean the common descent of humans and other organisms–presents very serious problems for many, perhaps most, evangelicals. This motivates them to look for alternative views.  </p>

<p>The alternatives evangelicals embrace are precisely those we have studied in this series. Some eagerly support the YEC view. Others prefer one of the many varieties of the OEC view. Many like the strident tone of the ID movement, with its vigorous assault on biological and cultural “Darwinism” and its near-universal rejection of human evolution. For most evangelicals, however, TE is probably not a viable option at present, for biblical and theological reasons.</p>

<h3>Reconciling Evolution with Scripture</h3>

<p>Most evangelicals do not see any reasonable way to combine human evolution with the following beliefs:</p>

<ul><li>the uniqueness of humans, who alone bear the “image of God”</li>

<li>the fall of Adam and Eve, the original parents of all humans, from a sinless state, by their own free choices to disobey God</li>

<li>the responsibility of each person for their own actions and beliefs, within a universe that is not fully deterministic</li>

<li>the redemption of individual persons by the atoning sacrifice of Christ.</li></ul>

<p>Evangelicals cannot and must not be separated from these crucial beliefs about human dignity, freedom, responsibility, sin, and redemption. The 64-dollar question is: can these beliefs be maintained without simultaneously affirming the necessity of an historical, separately created first human pair? The answer is probably in the hands of evangelical academics, especially theologians and biblical scholars. Can they be persuaded that the scientific evidence for evolution is sufficiently strong to warrant a re-examination of the traditional view?  Can a credible gospel and credible science be harmonized?  </p>

<p>There exists an enormous gap between popular conceptions of science–conclusions, methods, and attitudes–and those of scientists themselves. This gap is not unique to science among practitioners of specialized knowledge, and it is not unique to evangelicals among the lay public.  But it is real and very significant, and it affects theologians and biblical scholars no less than anyone else. Those who try to bridge this gap are mostly scientists (in their role as educators at colleges and universities and insofar as they write books for lay readers) and science journalists.  Many influential members of those professional communities are skeptical or even strongly hostile toward Christian beliefs, and this can exacerbate an already difficult state of affairs. If ways can be found to popularize good science, while showing appropriate sensitivity to the concerns of evangelicals, it would be a very good thing.</p>

<h3>Signs of Hope</h3>

<p>Certainly there are reasons to hope.  The conversation about science and religion is considerably broader now than it was at the time of the Scopes trial in 1925. Back then, many Protestants faced a very grim choice. On the one hand, they could follow politician William Jennings Bryan and the fundamentalists, rejecting modern science in the name of biblical authority and orthodox beliefs. On the other hand, they could follow theologian Shailer Mathews and the modernists, rejecting biblical authority and orthodox beliefs in the name of modern science. There was no one out there like John Polkinghorne, Francis Collins, Joan Centrella, Owen Gingerich, Simon Conway Morris, William Phillips, or Ian Hutchinson—to name just a few of the many top scientists today who accept evolution while affirming the divinity of Jesus, the bodily resurrection, and the actual divine creation of the universe. But they are all scientists, not theologians (except for Polkinghorne, who is both). In Galileo’s day, it was the scientists who eventually convinced the theologians and biblical scholars to accept Copernicus’ theory of the earth’s motion around the sun. But, it took a long time, and the process was difficult and often painful. Thus far, the biblical scholars and theologians who have tried to move the conversation forward have not been very well received, as Richard Ostling has <a href="http://www.christianitytoday.com/ct/2011/june/historicaladam.html">so capably reported</a>. I suspect we are in for more of the same.</p>

<h3>It’s Your Turn to Talk</h3>
<p>That’s what I think. What do you think? I’ll mainly be listening quietly, since I’ve now said all I wanted to say. Thank you all for hanging in there for ten months—far longer than I had originally anticipated. After a short respite I’ll return with a new series, but I’ll keep the topic under wraps for the time being.</p>]]></content:encoded>
        <pubDate>Thu, 17 Jan 13 06:00:57 -0800</pubDate>
        <dc:creator>Ted Davis</dc:creator>
        <!--<dc:date>Jan 17, 2013 06:00</dc:date>-->
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        <title>Made in the Image of God: Human Values and Genomics</title>
        <link>http://biologos.org/blog/human&#45;values&#45;and&#45;genomics?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/human&#45;values&#45;and&#45;genomics?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Genes and physiology are seen as something different from &quot;us&quot; and &quot;our mind,&quot; and they seem to be controlling us, so we can&apos;t even change our mind. Humans are presented as pawns of their biology, puppets dancing to the tune of their genetic masters.</description>
        <content:encoded><![CDATA[<p>In January 2011 and then in January 2012 I posted two articles exploring the implications of contemporary genomics for the Judeo-Christian idea of humankind made in the image of God (<em>Imago Dei</em>), an ancient idea that has contributed historically to the shaping of moral values, political systems, medical care, education and the justification of human rights. In this article we consider the meaning of the "image of God" language in its historical context and the way in which its vision of human freedom and identity challenges the fatalistic ideas that are often linked to our understanding of the role of DNA in human destiny.</p>

<p>During the past year the first results were published from the "Encyclopedia of DNA elements" project (<a href="http://www.nature.com/encode/#/threads">'ENCODE'</a>), revealing that at least 20 percent of the genome, perhaps more, is involved in regulating the expression of its 21,000 protein-encoding genes. The "selfish gene" had its day in the sun, but has now been replaced by the image of a finely tuned genomic system in which each type of gene product cooperates via an intricate networking complex to generate the music of life. The vast array of epigenetic signals whereby genes are switched on or off ensures a steady flow of two-way communication between the genome and its wider environments.</p>

<p>The human as a complex, interactive and highly integrated system might not on the face of it seem a fruitful hunting ground for those who see the genes as pulling the strings of life. Nevertheless, the past year has continued to see a growing love affair between the social sciences and genomics. This is well illustrated by a <a href="http://www.nature.com/news/biology-and-ideology-the-anatomy-of-politics-1.11645">recent article in <em>Nature</em></a> entitled: "The anatomy of politics -- from genes to hormone levels, biology may help to shape political behavior." The author writes that "An increasing number of studies suggest that biology can exert a significant influence on political beliefs and behaviors," reporting that "genes could exert a pull on attitudes concerning topics such as abortion, immigration, the death penalty and pacifism." The political scientist John Hibbing is quoted as saying that "...it is difficult to change someone's mind about political issues because their reactions are rooted in their physiology."</p>

<p>Geneticists have highlighted the <a href="http://www.scientificamerican.com/article.cfm?id=why-genes-dont-predict-voting-behavior">suspect nature of such claims</a> from a purely scientific perspective. But in our present context it is the way that the genetic results are reported that is most striking. Note the dualist language involved and its assumption of genetic determinism. Genes and physiology are seen as something different from "us" and "our mind," and they seem to be controlling us, so we can't even change our mind. Humans are presented as pawns of their biology, puppets dancing to the tune of their genetic masters.</p>

<p>What has all this to do with the "big idea" concerning human identity that the <em>Imago Dei</em> provides? More, it turns out, than initially meets the eye. The clash of ideas here between theology and science comes not at the level of the science itself, which, in this case, remains ambiguous and disputed, but at the level of the ideological packaging of scientific ideas. To see where the clash comes from, we first need to understand the revolutionary nature of the <em>Imago Dei</em> idea in its original context in the texts of Genesis.</p>

<p>For millennia it was uniquely the pharaoh or the king who was seen as being in the "image of a god" in the polytheistic political systems of ancient Egypt and Mesopotamia. Adad-shum-ussur, a court astrologer and cultic official in the seventh century B.C. royal court of Nineveh, made clear that the Assyrian king Esarhaddon is the very image of Bel (Marduk), the top god of that era:</p>

    <blockquote>A (free) man is as the shadow of god, the slave is as the shadow of a (free) man; but the king, he is like unto the (very) image of god.</blockquote>

<p>Richard Middleton provides further examples in his book, <a href="http://www.amazon.com/gp/product/1587431106/ref=as_li_ss_tl?ie=UTF8&tag=thebiofou06-20&linkCode=as2&camp=1789&creative=390957&creativeASIN=1587431106"><em>The Liberating Image</em></a><img src="http://www.assoc-amazon.com/e/ir?t=thebiofou06-20&l=as2&o=1&a=1587431106" width="1" height="1" border="0" alt="" style="border:none !important; margin:0px !important;" />, which describes how the stratified urban society of great cities such as Babylon was structured politically, socially and economically round the king's court and the cultic practices of temple worship of the various polytheistic deities of the city. Social destinies were unchanging because rooted in powerful creation myths. Power was in the hands of the privileged few and true freedom belonged only to the king, for only he was in the image of a powerful god.</p>

<p>Would Hebrew thinkers and writers have been familiar with this idea? Almost certainly, yes, since Israel had significant cultural and economic contact with both Egypt and Mesopotamia over prolonged periods, not least during their periods of exile. So how would the original readers of that wonderful theological essay, Genesis chapter 1, have understood these words?:</p>

    <blockquote>Then God said, "Let us make adam [humankind] in our image, in our likeness, and let them rule over the fish of the sea and the birds of the air, over the livestock, over all the earth, and over all the creatures that move along the ground." So God created adam in his own image, in the image of God he created him; male and female he created them. [Genesis 1:26-27]. </blockquote>

<p>In its historical context, the implications were revolutionary: the kingly and priestly male roles previously allocated to the privileged few by a pantheon of gods were now being delegated instead by the one creator God to the whole of humanity, male and female. In a stroke the entire ruling and priestly structure of Mesopotamian society was delegitimized. The <em>Imago Dei</em> was being democratized and it was now humankind who were to be the significant players in the arena of earthly life, the mandate to rule underlying their new responsibilities. Above all, humanity was set free by the one true God to determine their own destiny, no longer under the yoke of all-powerful dictators, nor under the baleful astrological control of the moon and stars.</p>

<p>Yet, ever since, humans have become experts at re-enslaving themselves, refusing the responsibilities that come with free-choice and submitting instead to narratives of fate and destiny. It seems ironic that today it is not the creation myths of ancient Babylon but the ideological interpretations of biology that provide the narratives of fate, in which genes "pull" humans toward certain political views and people cannot change their minds because their convictions are "rooted in their physiology."</p>

<p>"It's in his or her DNA" is a new phrase becoming increasingly embedded in our language, referring to something that cannot apparently be changed. On Sept. 8, 2012, Brad Pitt was quoted by the <a href="http://www.dailymail.co.uk/home/moslive/article-2199295/Brad-Pitt-talks-Angelina-Jolie-I-want-approval-Angie-force--I-want-proud-man.html">Daily Mail</a> as saying that "America is a country founded on guns. It's in our DNA. It's very strange but I feel better having a gun." No it's not in our DNA, Mr. Pitt, either literally or metaphorically. People have choices -- they are the prisoners neither of their genetics, nor of their physiology, nor indeed of their environments. Human beings made in the image of God are free to chart their own destiny in a way that preserves human value and dignity. On that we can leave the last word to Abraham Lincoln: "...nothing stamped with the Divine image and likeness was sent into the world to be trodden on, and degraded, and imbruted by its fellows" (Aug. 17, 1858).</p>]]></content:encoded>
        <pubDate>Tue, 15 Jan 13 06:00:13 -0800</pubDate>
        <dc:creator>Denis Alexander</dc:creator>
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        <title>Does Evolution Compromise Human Morality?</title>
        <link>http://biologos.org/blog/does&#45;evolution&#45;compromise&#45;human&#45;morality?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/does&#45;evolution&#45;compromise&#45;human&#45;morality?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Once we have a scientific hypothesis for how something exists, it is tempting to make the philosophical inference that this is also why it exists.</description>
        <content:encoded><![CDATA[<p>Once we have a scientific hypothesis for <em>how</em> something exists, it is tempting to make the philosophical inference that this is also <em>why</em> it exists.  Richard Dawkins (1976), as well as Michael Ruse and Edward O. Wilson (1993), do this in the evolution of human morality.  Scientifically, they hypothesize that, once humans started living in large, complex social groups, individuals whose genes made them constantly selfish were punished by the group and therefore produced fewer offspring than individuals whose genes made them believe in an objective moral code. Moving into philosophy, Ruse and Wilson (1993) write,</p>

<blockquote>Morality, or more strictly our belief in morality, is merely an adaptation put in place to further our reproductive end.</blockquote>

<p>Important scientific theories invite philosophical and theological reflection. Dawkins, Ruse, and Wilson, have described their conclusions. But scientific theories are often compatible with multiple philosophical and religious interpretations. For example, Newton's laws of motion and gravity allow several competing theistic and atheistic interpretations.</p>

<p>To avoid Ruse and Wilson's philosophical conclusion, we need not dispute their scientific hypothesis about how morality evolved. We need only dispute their philosophical extrapolation as to why morality exists. Even if we restrict ourselves to an atheistic worldview, this extrapolation is questionable.  Donald MacKay (1965) would call this an example of "the fallacy of nothing but-tery".  This is the assertion that a description of something at one level renders other levels of description meaningless.  From our everyday experience, we know that a successful description on one level does not invalidate other levels of description.  For example. one might assert that a Shakespeare sonnet is "nothing but" ink blots on a page (MacKay 1965).  True, one way to describe a sonnet is to precisely specify the page coordinates of every ink blot.  This description is valid and complete on its own level; however, one could also analyze the sonnet linguistically, emotionally, socially, historically, and on other levels.  If one is programming an inkjet printer, the most important description is in terms of ink blot coordinates. For almost every other purpose in life, however, that is an unimportant level of description.  In the same way, a complete evolutionary description of the existence of morality does not necessarily invalidate the truth, utility, or significance of other levels of description of morality.</p>

<p>If we do not restrict ourselves to atheism and instead allow for the existence of a creator, the extrapolation from <em>how morality evolved</em> to <em>why morality exists</em> fails further. Consider an analogy.  Suppose an inventor builds a robot which could do a variety of useful things-- mow the lawn, clean the house, grade homework, write book chapters, and so on.  One thing this robot can do, given a complete set of spare parts, is build a replica of itself.  Whenever the inventor needs another robot, she gives one robot a set of spare parts and has it build a replica of itself.  Amongst all the software subroutines within this robot, there is a set of subroutines that govern the robot's self-replication, including the replication of those self-replication subroutines.  Would it be correct to say that the purpose of the robot's existence is merely to reproduce those particular self-replication subroutines? Do all of the other software and hardware of the robot--which allow it to mow the lawn, and so on-- merely further the reproductive ends of those self-replication subroutines? At one level, the robot's hardware and software do serve to reproduce those self-replication software routines.  At another level of analysis, however, those self-replication software routines serve the robot to produce more copies of itself.  At still another level, those self-replication software routines serve the robot's creator.  The creator of the robot should get the last world as to which of those levels of description is most important.</p>

<p>In humans, does morality exist to further the reproduction of certain genes, or do those genes exist in order to allow for the production of new human beings who can behave morally? If human beings have a creator, the creator gets the final word on the question of purpose.  The mechanism which the creator used to make those genes-- whether <em>de novo</em> or via evolution-- is secondary.  The creator's purpose in creating those genes decides the issue.</p>

<h3>References</h3>
<ul><li>Dawkins, Richard. 1976. Pp. 1-11 in <em>The Selfish Gene</em>. Oxford: Oxford University Press.</li>

<li>MacKay, Donald. 1965. <em>Christianity in a Mechanistic Universe</em>. Chicago: InterVarsity.</li>

<li>Ruse, Michael, and Edward O. Wilson. 1993. The approach of sociobiology: The evolution of ethics. In <em>Religion and the Natural Sciences</em>, ed. James E. Huchingson. Fort Worth: Harcourt Brace Javonovich.</li></ul>
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        <pubDate>Mon, 14 Jan 13 04:00:14 -0800</pubDate>
        <dc:creator>Loren Haarsma</dc:creator>
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        <title>Why Strict Atheism Is Unscientific</title>
        <link>http://biologos.org/blog/why&#45;strict&#45;atheism&#45;is&#45;unscientific?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/why&#45;strict&#45;atheism&#45;is&#45;unscientific?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Do you believe in God? If a cadre of outspoken, strong atheists wrote a litmus test for scientists, that might very well be question #1.</description>
        <content:encoded><![CDATA[<p>Do you believe in God?</p>
<p>If a cadre of outspoken, strong <a href="http://en.wikipedia.org/wiki/Atheism">atheists</a> wrote a litmus test for scientists, that might very well be question #1.</p>
<p>"Scientists,  if you're not an atheist, you're not doing science right," PZ Myers --  a well-known blogger, biology professor and atheist -- regularly <a href="http://www.youtube.com/watch?feature=player_embedded&amp;v=TdKU_zvVAno">preaches</a>.</p>
<p>But if this is true, then as many as <a href="http://news.discovery.com/tech/are-scientists-atheists.html">half of scientists are doing science wrong</a>.  A 2009 study from the Pew Research Center polled members of the  American Association for the Advancement of Science (AAAS). Fifty-one percent of  respondents reported a belief in a higher power. Does this mean that  it's too late for science? Has religion already pillaged the minds of  researchers worldwide? No, of course it hasn't.</p>
<p>"It seems to me that we as a society have lately been caught in this  false dichotomy where it's either God as the guy with the beard on the  cloud or nothing at all," neuroscientist David Eagleman <a href="http://news.discovery.com/tech/are-scientists-atheists.html">told</a> <em>Discovery News.</em></p>
<p>Staunch  atheists often falsely characterize followers of religion as being  "all-in" with their beliefs, opining that they ascribe to the whole  creationist, woo-y shebang. "Where's your evidence?" atheists mockingly  question. "You can't prove that God exists!" they accuse (correctly).  Yet, hypocritically, strict atheists are guilty of the exact same crime:  belief without evidence.</p>
<p>"We know too little to commit to a position of strict atheism. [But] we  know way too much to commit to any particular religious story," Eagleman <a href="http://blogs.howstuffworks.com/2010/11/22/possibilianism/"> said</a>.</p>
<p>Just  as it's a leap of faith for a religious person to assert that God  incontrovertibly exists, it's an equally large leap for a strict atheist  to declare, without question, that God does not exist. As Carl Sagan  eloquently explained:</p>
<blockquote>An atheist is someone who is certain that God does not exist, someone  who has compelling evidence against the existence of God. I know of no  such compelling evidence. Because God can be relegated to remote times  and places and to ultimate causes, we would have to know a great deal  more about the universe than we do now to be sure that no such God  exists. To be certain of the existence of God and to be certain of the  nonexistence of God seem to me to be the confident extremes in a subject  so riddled with doubt and uncertainty as to inspire very little  confidence indeed.</blockquote>
<p>Absence of evidence is not  evidence of absence. As this statement applies to science, so does it  apply to religion. History is replete with signs that an all-powerful  deity may not exist, but such substantiation is nowhere near  tantamount to proof -- especially, <a href="http://en.wikipedia.org/wiki/Religious_views_of_Albert_Einstein">as</a> Albert Einstein said, in a universe as incomprehensibly vast as our own:</p>
<blockquote>The  human mind, no matter how highly trained, cannot grasp the universe. We  are in the position of a little child, entering a huge library whose  walls are covered to the ceiling with books in many different tongues.  The child knows that someone must have written those books. It does not  know who or how. It does not understand the languages in which they are  written. The child notes a definite plan in the arrangement of the  books, a mysterious order, which it does not comprehend, but only dimly  suspects. That, it seems to me, is the attitude of the human mind, even  the greatest and most cultured, toward God. We see a universe  marvelously arranged, obeying certain laws, but we understand the laws  only dimly.</blockquote>
<p>Ultimately, the key is not to be swayed  to one extreme or the other -- fundamentalist religion or strict  atheism -- but to walk a reasoned middle path. Eagleman believes that  path is "possibilianism," the concept of holding multiple beliefs or  hypotheses whilst exploring new ideas.</p>
<p>"The goal is to avoid committing to any particular story," Eagleman <a href="http://news.discovery.com/tech/are-scientists-atheists.html">told</a><em> Discovery News</em>, "whether that's religious fundamentalism or strict atheism. The  goal of possibilianism is to retain the wonder that drives us all into  science in the first place and to avoid acting as though we know the  answers to things we can't possibly know at the moment."</p>
<p>Strict  atheists do the world an incredible service by promoting the scientific  method, skepticism, and critical thinking. But they do a disservice by  campaigning against religion or touting -- as pure truth -- the  non-existence of God, for those actions (especially the latter) are just  as unscientific as a blind belief in all aspects of religion.</p>
<p>This summer, a <a href="http://www.washingtonpost.com/national/on-faith/poll-shows-atheism-on-the-rise-in-the-us/2012/08/13/90020fd6-e57d-11e1-9739-eef99c5fb285_story.html">worldwide poll</a> showed that atheism is on the rise and religiosity is on the decline.  It is my hope that these "New Atheists" and agnostics won't narrowly focus  on denigrating religion, but will instead focus on encouraging  open-mindedness and discouraging fundamentalism.</p>
<p>That would surely make the world a more enlightened place.</p>]]></content:encoded>
        <pubDate>Wed, 19 Dec 12 11:20:38 -0800</pubDate>
        <dc:creator>Ross Pomeroy</dc:creator>
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        <title>Series: Science and the Bible: Intelligent Design</title>
        <link>http://biologos.org/blog/series/science&#45;and&#45;the&#45;bible&#45;intelligent&#45;design?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/science&#45;and&#45;the&#45;bible&#45;intelligent&#45;design?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In this series, Ted Davis identifies the history, core tenets and assumptions about the Intelligent Design view.</description>
        <content:encoded><![CDATA[<h3>What’s in a name?</h3>
<p>According to <a href="http://www.merriam-webster.com/">Merriam Webster</a>, the term “intelligent design” has been used since at least 1847, in reference to “the theory that matter, the various forms of life, and the world were created by a designing intelligence.”  That’s a decent definition, also consistent with those offered by today’s proponents of intelligent design (ID). For example, the leading ID think tank, The Discovery Institute (Seattle), has <a href="http://www.intelligentdesign.org/whatisid.php">this</a>:</p>

<p style="margin: 0 0 0 10px;"><em>Intelligent design refers to a scientific research program as well as a community of scientists, philosophers and other scholars who seek evidence of design in nature. The theory of intelligent design holds that certain features of the universe and of living things are best explained by an intelligent cause, not an undirected process such as natural selection.</em></p>

<p>And in the opening sentence of a book he edited with philosopher Michael Ruse, ID theorist William Dembski said, “Intelligent Design is the hypothesis that in order to explain life it is necessary to suppose the action of an unevolved intelligence.” (<em>Debating Design</em>, p. 3)</p>

<p>On the other hand, while a recent contest on a prominent intelligent design (ID) <a href="http://www.uncommondescent.com/intelligent-design/contest-who-invented-the-phrase-intelligent-design-judged/">website</a> uncovered several other early uses of the term, it is important to note that it does not always mean exactly the same thing in each reference. The term itself has an interesting history, and while ID authors obviously did not invent the term “intelligent design,” they have given it specific content in recent years.  Indeed, they have even <em>removed</em> content in some cases: a point I will return to later is that, though it seems the only viable candidate for such an “unevolved intelligence” is God, ID proponents sometimes seem to do cartwheels to avoid saying as much.  When a term has such a complicated past, there simply is no substitute for looking at specific references in their own contexts as we move to seeing how ID plays out today as one of the 5 ways of relating science and the Bible. </p>

<p>Interestingly, many Protestant “modernist” scientists and theologians from William Jennings Bryan’s day (see my <a href="http://biologos.org/blog/science-and-the-bible-theistic-evolution-part-5">previous column</a>) unhesitatingly endorsed the idea that a designing intelligence lay behind nature. At least one such person, Nobel prize-winning physicist Arthur Holly Compton, even used the very term “intelligent design” in an address he gave at a Unitarian church in 1940: “The chance of a world such as ours occurring without intelligent design becomes more and more remote as we learn of its wonders.” (Quoting his pamphlet from 1940, <em>The Idea of God as Affected by Modern Knowledge</em>, p. 13. For more about this aspect of Compton’s views, click <a href="http://www.asa3.org/ASA/PSCF/2009/PSCF9-09Davis2.pdf">here</a>.) However, Compton regarded design as a philosophical and theological inference from science, not an explanation <em>within</em> science to be invoked when other explanations fail. He also accepted the common ancestry of humans and other organisms. This is a significant difference from the ID movement today, which offers ID as a <em>scientific alternative</em> to Darwinian evolution and (at least in many cases) seeks to undermine public confidence in common ancestry (even though ID <em>per se</em> is not actually opposed to it). </p>

<p>If any ID proponents are sympathetic to the type of religious modernism that Compton and his friends embraced, I cannot tell you who they are. In a curious, ironic twist, ID is often used by conservative Christian apologists partly to defend a cluster of traditional theological and hermeneutical positions that none of the modernists would have defended. A further irony: the intellectual descendants of the modernists—those scientists and theologians who occupy the left wing of the modern “dialogue” of science and religion—exhibit a studied avoidance of the term “design,” disconnecting them on that score from the modernists of the 1920s. </p>

<p>Many other contemporary writers, including some evangelical TEs, are also reluctant to use the word “design,” precisely because in their view it has been co-opted by ID proponents and they do not want readers to misunderstand their position(s). They may agree with ID proponents that certain features of the universe reflect divine design, but because they do not see design as a <em>scientific</em> explanation they employ other language. (Likewise, the YECs have co-opted the word “creationism” to mean just one specific understanding of God’s creative activity, leading most advocates of other views either to provide their own definitions of the word or else to avoid using it altogether. Politics dogs this conversation at every turn.)</p>

<h3>Core Tenets or Assumptions of Intelligent Design</h3>
<p>With that bit of historical context for the term “Intelligent Design,” let’s now look at the first of the Core Tenets of this perspective in its current state, and as it is most often used by those associated with the Intelligent Design movement.</p>

<p><strong>(1) The Bible is <em>NOT</em> to be mentioned (at least for now); ditto for “God” and “theology” as far as possible.</strong></p>

<p>This is a deliberate strategy, adopted for political reasons to keep arguments at the level of philosophy and science. Here, “political” refers to the American political system, with its constitutional disestablishment of religion, not to partisan politics. Since the 1980s, federal courts have consistently ruled that “creationism” (which was specifically of the YEC variety in the relevant cases) is sectarian religion, not science, and therefore it cannot be taught in public school science classes. Anxious to avoid a similar fate, proponents of ID always want to ensure that they are not perceived as advocates of “creationism.” The less they mention God and the Bible, the reasoning goes, the less likely they are to fall afoul of those decisions.</p>

<p class="caption-center"><img src="http://biologos.org/uploads/static-content/first_amendment.jpg" alt="" height="331" width="424"  /><br />The First Amendment to the U.S. Constitution, pertaining to the freedom of religion and the freedom of the press. <br />Source: http://www.rochester.edu/college/psc/images/Courses/Spring2008/FirstAmendment.png</p>

<p><a href="http://en.wikipedia.org/wiki/Phillip_E._Johnson">Phillip Johnson</a>, the former law professor who effectively began the ID movement some twenty years ago, has put it bluntly: “To put things on a more rational basis, the first thing that has to be done is to get the Bible out of the discussion.” He quickly adds, “This is not to say that the biblical issues are unimportant; the point is rather that the time to address them will be after we have separated materialist prejudice from scientific fact.” (<a href="http://www.touchstonemag.com/archives/article.php?id=12-04-018-f">“The Wedge: Breaking the Modernist Monopoly on Science,”</a> <em>Touchstone: A Journal of Mere Christianity</em>, July/August 1999, p. 22.) </p>

<p>If God and the Bible are really to be left out for the time being, then why am I discussing ID in a series on “Science and the Bible”? It’s a fair question. I simply don’t see any way meaningfully to avoid talking about ID apart from the culture wars in which it is embedded (I’ll say more about this in a subsequent column), and the Bible is never far from the surface when the battle being fought involves origins. Conservative Christians sense that ID really <em>is</em> about God—Dembski’s “unevolved intelligence”. As Dembski himself <a href="http://www.leaderu.com/offices/dembski/docs/bd-the_ac.html">has said</a>, “no intelligent agent who is strictly physical could have presided over the origin of the universe or the origin of life”, and there aren’t a lot of candidates for that job. Many Christians also identify strongly with the ways in which ID seeks to confront the secular establishment, in an explicitly-stated effort to combat what Johnson calls “the modernist scientific and intellectual world, with its materialist assumptions.” (“The Wedge,” p. 23.) They see it as a way of getting traditional theistic perspectives and Christian values back into the academy, once “design” has become an acceptable academic talking point—and it isn’t very far from there to conversations about “science and the Bible.” If this were not so, then why would so much ID literature be published by Christian presses? Indeed, when I tell church audiences with a straight face that ID purports not to be about the Bible at all, I’m usually met with considerable skepticism.</p>

<p>When I’m back in about two weeks, we’ll look at further Core Tenets of ID—the ones that have even less to do with the Bible, explicitly, and more to do with the way we approach the  study of the natural world.</p>
]]></content:encoded>
        <pubDate>Tue, 18 Dec 12 07:00:11 -0800</pubDate>
        <dc:creator>Ted Davis</dc:creator>
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        <title>Series: Surprised by Jack: C.S. Lewis on Mere Christianity, the Bible, and Evolutionary Science</title>
        <link>http://biologos.org/blog/series/surprised&#45;by&#45;jack?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/surprised&#45;by&#45;jack?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In this five&#45;part series, David Williams responds to the book The Magician’s Twin: C.S. Lewis on Science, Scientism, and Society by John West and the Discovery Institute, showing that C.S. Lewis was a very complicated thinker whose views are hard to line up exactly with any camp in the current debates over the compatibility of Christian faith and evolutionary science.</description>
        <content:encoded><![CDATA[<p>“All reality is iconoclastic.”<sup>1</sup> When C.S. Lewis—or ‘Jack’ as his friends called him—penned that line in 1961, he was writing about God’s proclivity for repeatedly smashing our inevitably half-baked notions about Him.  But much the same can be said for what reality does to our own cultural icons as well. And, if nothing else, Lewis himself has become a cultural icon for many American evangelicals, identified by many as the 20th century’s Christian intellectual <em>par excellence</em>.</p>

<p>With his compelling personal story of becoming England’s “most reluctant convert,” his towering intellect, and his inimitable eloquence, American evangelicals’ lionization of Lewis is certainly understandable.<sup>2</sup> But when we attempt to lionize people we often ironically end up taming them, paring their claws so that our heroes and our preconceptions can safely cohabitate in our imaginations.  But Lewis is no safer a lion than Aslan, and he will not go quietly into our tidy evangelical boxes.  To be frank, American Evangelicalism’s infatuation with Lewis is in many respects somewhat odd.  For here is a pathologically populist movement with a penchant for Big Tent Revivalism, an obsession with liturgical innovation, a deep-seated suspicion of ecclesiastical tradition, and a raw nerve about the doctrine of justification, falling head-over-heels for a tweed-jacketed, Anglo-Catholic Oxford don—a curmudgeonly liturgical traditionalist who was fuzzy on the atonement, a believer in purgatory, and, as we shall see, whose views on Scripture, Genesis, and evolution position him well outside of American Evangelicalism’s standard theological paradigms.  All of that is to say that Lewis was not “just like us”—<em>any</em> of us—and if we would do him justice, we must be prepared to be <em>surprised</em> by Jack.</p>

<p>In what follows, I would like to look at three areas relevant to faith and science discussions where Lewis’s stated views might be surprising for his American Evangelical admirers—namely, his views on Scripture generally and Genesis in particular, his views on Adam and the doctrine of the Fall, and his views on evolutionary science and the myth of ‘Evolutionism.’</p>

<h3>Reflections on the Scriptures: Lewis on the Bible, Myth, & Fact </h3>

<p>Lewis derived his theological understanding of the Bible from his reading of Scripture, his intimate knowledge of the Church Fathers and the Medieval Doctors, and also from his awareness of modern biblical scholarship.  While Lewis was regularly critical of Modernist biblical scholarship’s naturalistic dismissal of the miraculous, its pedantry, literary tin-ear, and over-eagerness to conflate Jesus’ story with the stories of pagan mythologies (he had precious little patience for Rudolf Bultmann, for instance ), he was not at all given to the knee-jerk reactionary Fundamentalism which has held so much sway in American Evangelical culture.  In fact, Lewis incorporated many of the more well-supported conclusions of modern biblical criticism into his theology of Scripture, not least critical opinions about the historicity of much of the Old Testament.  In good Anglican fashion, Lewis creatively drew upon the deep resources of the Church’s grand Tradition in order to think through the contemporary problems posed by modern critical scholarship.  Here I wish to focus on three features of Lewis’s theological conception of Scripture—his understanding of the Bible as being <strong>incarnational</strong> and <strong>sacramental</strong> in character, and <strong>Christotelic</strong> in focus—before turning to his theological reading of Genesis 1-3.<sup>4</sup></p>

<h3>Inspiration and Incarnation</h3>

<p>According to Lewis, the Bible is both a vessel of the divine Word and also a profoundly human collection of documents. In his longest, most substantive piece on Scripture, chapter XI of <em>Reflections on the Psalms</em>, Lewis frames a thoroughly incarnational understanding of the Bible:</p>

<blockquote>The human qualities of the raw materials show through.  Naïvety, error, contradiction, even (as in the cursing Psalms) wickedness are not removed.  The total result is not “the Word of God” in the sense that every passage, in itself, gives impeccable science or history.  It carries the Word of God; and we (under grace, with attention to tradition and to interpreters wiser than ourselves, and with the use of such intelligence and learning as we may have) receive that word from it not by using it as an encyclopedia or an encyclical but by steeping ourselves in its tone or temper and so learning its overall message.<sup>5</sup></blockquote>

<p>Lewis’s reference to “[the] human qualities” of the Bible’s “raw materials” is suggestive.  As Peter Enns puts it in his book <em>Inspiration & Incarnation: Evangelicals and the Problem of the Old Testament</em>, the Incarnation of the Son and the inspiration of Scripture are “analogous.”<sup>6</sup>  Lewis clearly agrees.  He goes on in the chapter to articulate a theology of Scripture precisely in incarnational terms:</p>

<blockquote>For we are taught that the Incarnation itself proceeded “not by the conversion of the godhead into flesh, but by taking of (the) manhood into God”; in it human life becomes the vehicle of Divine life.  If the Scriptures proceed not by conversion of God’s word into literature but by taking up of a literature to be the vehicle of God’s word, this is not anomalous.<sup>7</sup></blockquote>

<p>According to Lewis, the means whereby God gives us Scripture is not by faxing us transcripts of inner-Trinitarian dialogue direct from Heaven, but rather, on analogy with the Incarnation, by taking up very human literature and utilizing it to communicate His Divine life to us.  </p>

<p>“We might have expected, we may think we should have preferred, an unrefracted light giving us ultimate truth in systematic form—something we could have tabulated and memorised and relied on like the multiplication table.”<sup>8</sup>  But God has instead deigned to give us a very human book, just as He deigned to send us a fully human Savior.  Lewis makes this point most poignantly in his Introduction to J.B. Phillips’s <em>Letters to Young Churches</em> where he writes:</p>

<blockquote>The same divine humility which decreed that God should become a baby at a peasant-woman’s breast, and later an arrested field-preacher in the hands of the Roman police, decreed also that He should be preached in a vulgar, prosaic and unliterary language.  If you can stomach the one, you can stomach the other.  The Incarnation is in that sense an irreverent doctrine: Christianity, in that sense, an incurably irreverent religion.  When we expect that it should have come before the World in all the beauty that we now feel in the Authorised Version we are as wide of the mark as the Jews were in expecting that the Messiah would come as a great earthly King.<sup>9</sup></blockquote>

<p>For Lewis, God’s work in the inspiration of Scripture not only communicates but also <em>emulates</em> God’s humble, self-effacing work in the Incarnation.  If the heart of Christianity, “an incurably irreverent religion,” should be the Incarnation, “an irreverent doctrine,” then it ought to come as no surprise that that doctrine should be most fundamentally communicated via an irreverent book. </p>

<p>A corollary of Lewis’ incarnational and sacramental view of Scripture is that when it comes to studying the Scriptures we must be prepared to be surprised.  Lewis warns against “the Fundamentalist’s” procedure of attempting to frame our ideas of Scripture <em>a priori</em>, deducing parameters for what the Scriptures can and cannot be from our preconceptions about God.  Lewis thinks such an approach to be a nonstarter:</p>

<blockquote>[There] is one argument which we should beware of using…: God must have done what is best, this is best, therefore God has done this.  For we are mortals and do not know what is best for us, and it is dangerous to prescribe what God must have done–especially when we cannot, for the life of us, see that He has after all done it.<sup>10</sup></blockquote>

<p>Instead, says Lewis, we should take a humble, a posteriori approach, looking and seeing just what kind of book it is that God has actually given us before making grand doctrinal declarations.  “To a human mind,” Lewis recognizes, an incarnational Bible “seems, no doubt, an untidy and leaky vehicle.”<sup>11</sup>  But it appears that this is what God has given us, and we must trust that God knows what He is doing.  As Lewis says, “Since this is what God has done, this, we must conclude, was best.”<sup>12</sup></p>


<h3>Myth Became Fact</h3>
<p>For Lewis, the Word is also like the sacrament. Just as ordinary water, bread, and wine are taken up into and become conduits for and communicators of the Divine life that we so desperately need, so, also, all-too-ordinary human writings are taken up into and become conduits for and communicators of the Divine life and word.  In Lewis’s view, we must receive the Divine word by approaching Scripture in a sacramental manner.  We “receive that word,” as Lewis says, again, “not by using [Scripture] as an encyclopedia or an encyclical but by steeping ourselves in its tone or temper and so learning its overall message.”<sup>13</sup> For Lewis, at least when it comes to the Old Testament, receiving the Word means more than simply paying critical attention to the surface meaning of the text, the <em>sensus literalis</em>.  Instead, we must press beyond the surface to the <em>sensus plenior</em>, to the “second sense” of the Old Testament, namely, Christ Himself.  “It is Christ Himself, not the Bible, who is the true word of God,” Lewis once wrote in a private letter.  “The Bible, read in the right spirit and with the guidance of good teachers, will bring us to Him.”<sup>14</sup> While such Christological <em>sensus plenior</em> interpretation may have fallen out of favor with many Protestants (to say nothing of thoroughgoing Modernist historical-critics), Lewis believes that “[we] are committed to it in principle by Our Lord Himself.”<sup>15</sup> Citing Jesus’ words to His disciples on the road to Emmaus, Lewis argues that Christ “accepted—indeed He claimed to be—the second meaning of Scripture.”  Citing a litany of Dominical sayings and New Testament texts, Lewis is clear that Christ is mysteriously the true spiritual center, climax, coherence, sum, and substance of the Old Testament Scriptures.<sup>16</sup></p>

<p>Lewis stands in good company in thinking along these lines.  The “good teachers” from which Lewis learned this hermeneutic are undoubtedly Aquinas, Bernard of Clairveaux, Augustine, Origen, and Irenaeus, not to mention the Apostles and Christ Himself.  In short, Lewis is standing within the mainstream tradition of pre-Reformation theological interpretation.  But Lewis is not simply striking a traditionalist posture.  Like a scribe trained for the Kingdom, he is prepared to bring forth treasures new and old.  By positioning himself within the grand tradition of pre-modern theological interpretation, Lewis frees himself to follow his highly-attuned modern literary-critical instincts regarding the historicity of much of the Old Testament while simultaneously upholding both a robust belief in the historicity of the Incarnation and a vital theological hermeneutic.    He writes:</p>

<blockquote>The earliest stratum of the Old Testament contains many truths in a form which I take to be legendary, or even mythical—hanging in the clouds, but gradually the truth condenses, becomes more and more historical.  From things like Noah’s Ark or the sun standing still upon Ajalon, you come down to the court memoirs of King David.  Finally you reach the New Testament and history reigns supreme, and the Truth is incarnate.  And “incarnate” here is more than a metaphor.  It is not an accidental resemblance that what, from the point of view of being, is stated in the form “God became Man,” should involve, from the point of view of human knowledge, the statement “Myth became Fact.”<sup>17</sup></blockquote>

<p>He sets up the above paragraph by saying, “[The Christian story] is like watching something come gradually into focus; first it hangs in the clouds of myth and ritual, vast and vague, then it condenses, grows hard and in a sense small, as a historical event in first century Palestine.”<sup>18</sup> Apart from the Incarnation, then, much of the Old Testament would be but “myth,” “ritual,” and “legend.”  These elements of the Old Testament only become tangible historical “Fact,” for Lewis, in the person and work of Christ.</p><br></br>

<p class="intro">Next time, Williams looks at how this understanding of Scripture framed Lewis' reading of Genesis 1-3.</p>


<h3>Note</h3>
<p class="date">1. C.S. Lewis, <em>A Grief Observed</em>, (San Francisco: Harper Collins, 2001), 66<br />
2. See Smietana, Bob, “C.S. Lewis Superstar: How a reserved British intellectual with a checkered pedigree became a rockstar for evangelicals,” <a href="http://www.christianitytoday.com/ct/2005/december/9.28.html">http://www.christianitytoday.com/ct/2005/december/9.28.html</a><br />
3. “Through what strange process has this learned German gone in order to make himself blind to what all men except him see?,” wrote Lewis in “Modern Theology and Biblical Criticism,” in Walter Hooper, ed., <em>Christian Reflections</em> (Grand Rapids: Eerdmans, 1995), 156<br />
4. I owe the word “christotelic” to my teachers at Westminster.  See especially the discussion in Peter Enns’ <em>Inspiration and Incarnation: Evangelicals and the Problem of the Old Testament</em>, (Grand Rapids: Baker Academic, 2005)<br />
5. Lewis, <em>Reflections on the Psalms</em>, (San Diego: Harcourt Inc., 1986), 111-12<br />
6. See note xii above.<br />
7. Lewis, <em>Reflections on the Psalms</em>, 116<br />
8. Ibid, 112<br />
9. Lewis, “Modern Translations,” in <em>God in the Dock</em>, (Grand Rapids: Eerdmans, 1970), 230<br />
10. Lewis, <em>Reflections on the Psalms</em>, 112<br />
11. Ibid<br />
12. Ibid, 113<br />
13. Ibid, 112<br />
14. Lewis in a letter, 8 November, 1952, in W.H. Lewis, ed., <em>Letters of C.S. Lewis</em>, (New York: Harcourt Brace Jovanovich, 1966), 247 cited in Martindale and Root, <em>The Quotable Lewis</em>, 72<br />
15. Lewis, <em>Reflections on the Psalms</em>, 117<br />
16. Ibid, 117-19<br />
17. Lewis, “Is Theology Poetry?,” in <em>The Weight of Glory and Other Essays</em>, (New York: Harper Collins, 2001), 129<br />
18. Ibid</p>

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        <pubDate>Thu, 13 Dec 12 04:00:31 -0800</pubDate>
        <dc:creator>David Williams</dc:creator>
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        <title>Surveying George Murphy&apos;s Theology of the Cross</title>
        <link>http://biologos.org/blog/surveying&#45;george&#45;murphys&#45;theology&#45;of&#45;the&#45;cross?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/surveying&#45;george&#45;murphys&#45;theology&#45;of&#45;the&#45;cross?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>If God himself is willing to die, particularly in such a gruesome way, then perhaps we should at least consider the possibility of God allowing the death of other creatures, too. But would this really be compatible with what we know of God through Scripture?</description>
        <content:encoded><![CDATA[<p style="margin: 0px 30px 0px 30px;"><em>Truly, I say to you, unless a grain of wheat falls into the earth and dies, it remains alone; but if it dies, it bears much fruit</em>. —John 12:24</p>

<h3>Introduction</h3>

<p>One of the reasons that some of us are hesitant to accept evolutionary creation is that it seems to make God responsible for the suffering and death of innumerable creatures over millions of years—before humans ever existed or sinned against their creator.  Since we believe in and worship a God who is loving, benevolent, and all-powerful, it sounds quite implausible that our God would have created a world like that; therefore, any scientific evidence for evolution <em>must</em> be incorrect.</p>

<p>Other people look at the scientific evidence for evolution and find a compelling case that it has taken place during our earth's history.  On this basis they may conclude that if evolution is true, then the belief in an all-powerful, perfectly good God must be false!</p>

<p>The trouble with both of these views is that they tend to invoke a completely abstract, philosophical god, not the living God of the Bible—the God who became a human being, experienced unimaginable suffering, and died in a grotesque and humiliating public display.  The death of Jesus completely defied the expectations (and common sense) of his followers, as well as the expectations of any “rational” understanding of the way the Creator of the universe should act in the world.  On the cross, in the person of Jesus, God took upon himself far more suffering than any creature has ever experienced.</p>

<p>If God himself is willing to die, particularly in such a gruesome way, then perhaps we should at least consider the possibility of God allowing the death of other creatures, too.  But would this really be compatible with what we know of God through Scripture?  In this essay, we will explore this quandary through a “theology of the cross”, a concept articulated by pastor George Murphy in his book <em>Cosmos in the Light of the Cross</em>.<sup>1</sup> </p>

<h3>Theology of the cross</h3>

<p>Before we jump into the theological problems associated with evolution, let’s take a look at how we understand Christian theology itself.  For the reformer Martin Luther, any theology (or science) that tries to reach knowledge of God apart from the cross is bad theology.<sup>2</sup>  Instead, Luther pointed to a <em>theologia crucis</em>, in which the true God is seen first and foremost “through suffering and the cross”. To make his point even clearer, Luther insisted that “the CROSS alone is our theology”.<sup>3</sup>   It is the lens through which we view <em>everything</em>.</p>

<p>Of course Martin Luther, having lived in the 16th century, was not aware of the vast history of life on our planet (or any other aspect of modern science, for that matter), but George Murphy draws from Luther’s teachings the foundation that all human knowledge begins with the Word made flesh and crucified.<sup>4</sup>   With the cross of Christ as the ultimate framework through which we view reality, we are bound to view the processes of nature quite differently.  As Murphy explains it,</p>

<blockquote>A theology of the cross is an explication of belief in a God who becomes a participant in the history of the universe and thereby shares in the suffering, loss, and death that are part of worldly experience.<sup>5</sup></blockquote>

<p>God does not sit idly by and watch unaffected as his creatures suffer, but neither does he swoop in and make everything completely effortless and easy.  Instead he chose another way, the crucifixion of Jesus—certainly not the approach that we would have preferred! The apostle Peter went so far as to try to talk Jesus out of it, but he was met with a stern rebuke (Matthew 16:21-23).</p>

As humans, we are inclined to recoil in horror at the idea of God being closely associated with the death.  Yet in the crucifixion we are forced to think of death and God together.  Jesus himself did not draw back from immense pain and suffering, but instead works <em>in</em> it and <em>through</em> it to accomplish his plans. In the cross we learn who God is, the One who brings new life from death (and ultimately conquers death completely).<sup>6</sup> 

<h3>Why is evolution so disconcerting to Christians?</h3>

<p>The problem of suffering throughout all of human history is troubling enough for us to reconcile with a loving, personal God.  But in addition to that, the discovery of vast numbers of fossils reveals that death has taken place on a far greater scale than we had ever imagined.  Both the wide variety of extinct creatures and their sheer numbers is quite staggering, and it raises questions about our Creator:</p>

<blockquote>The picture of a God who is immune from suffering and death but who forces organisms through millions of generations and extinction is disturbing to those who believe in a God of love.<sup>7</sup></blockquote>

<p>The mass extinction of life on earth was already well established by the early 19th century—decades before Darwin’s research—and extinction can be empirically verified independent of any theory of evolution.<sup>8</sup>   The fact that the earth’s crust is a veritable graveyard of long-lost creatures is deeply troubling, and as late as the 1790’s, distinguished intellectuals such as Thomas Jefferson denied the very possibility of extinction.<sup>9</sup></p>

<p>But in addition to the reality of species extinction, the theory of evolution by natural selection proposes that new species also arise in an environment containing widespread pain and death.  Both the creatures that are now living and those that are gone are tainted by an “acrid smell of death”.<sup>10</sup>  It makes us wonder, if our Creator is not the God of the dead, but of the living (Mk. 12:27), where is God’s presence in the evolutionary picture?</p>

<p>In all honesty, creation through evolution is not what we would <em>expect</em> from God, but Scripture is full of examples in which God acts in unexpected ways.  After all, God’s choosing to undergo an agonizing death on a cross is not what we would expect from the all-powerful Creator of the universe, either.  In both cases, new life comes about through pain, suffering, and death.  As George Murphy puts it,
</p>

<blockquote>A priori ideas about God have to be overcome, and God's character has to be learned from God's self-revelation.<sup>11</sup></blockquote>

<p>God’s fullest self-expression is in Jesus Christ himself, one who is intimately familiar with and personally endured creaturely pain and death.  The theology of the cross reveals that God's self-revelation takes place in situations of suffering, loss, and apparent hopelessness, much like situations that occur through natural selection.<sup>12</sup></p>

<h3>The crucifixion is disconcerting too</h3>

<p>Not only is creation through evolution an unexpected and unsettling process, but so is the crucifixion of Jesus!  Killing someone by hanging them on a cross is an unbearably painful, prolonged, humiliating form of death. It was such a horrific type of public execution that it wasn't until after the Roman Empire stopped the practice of crucifixion—and people no longer witnessed it personally—did the cross become a visual object of devotion.<sup>13</sup> Our culture is sufficiently removed from crucifixion that we are desensitized to its original significance, but to connect it to our current context, imagine the reaction you would get by wearing jewelry designed to look like an electric chair.<sup>14</sup></p>

<p>Once we are more attuned to the brutality of crucifixion, it seems all the more striking that the cross is the sign of God’s work, what George Murphy calls “the trademark of God”.<sup>15</sup>   The suffering and death of Jesus is featured prominently in the Gospels, but the crucifixion-resurrection pattern is strongly resonant within the Old Testament, too.  Israel suffered and toiled as slaves in Egypt for centuries before they were rescued in the Exodus, bringing life to a people who were spiritually dead.  Centuries later, the nation of Israel would experience death again when the Babylonians destroyed the Davidic monarchy, burned their Temple, killed their people, and sent many into exile.<sup>16</sup>  Neither Israel (God’s chosen people) nor Jesus (God’s own son) were spared from death and suffering; rather, suffering seems to have been the way in which God re-forms and renews humanity to fully bear His own image.</p>

<h3>Redemption extends to all of creation</h3>

<p>Fortunately, God’s story does not end with death.  God gives new life after his creatures have been subjected to terrible circumstances.  Redemption was promised to Israel itself—Ezekiel’s vision of the valley of dry bones describes how God would renew His chosen people (Ezek 37:1-14).  Later, the astonishing resurrection of Jesus made salvation possible not only for Jews, but for all people in Christ (Gal 3:26-29).  Ultimately, the New Testament makes it clear that God’s renewal will encompass the entire Creation:</p>

<blockquote>For God was pleased to have all his fullness dwell in him, and through him <strong>to reconcile to himself all things, whether things on earth or things in heaven</strong>, by making peace through his blood, shed on the cross. (Colossians 1:19-20)</blockquote>  

<blockquote>With all wisdom and understanding, he made known to us the mystery of his will according to his good pleasure, which he purposed in Christ, to be put into effect when the times reach their fulfillment—<strong>to bring unity to all things in heaven and on earth</strong> under Christ. (Ephesians 1:8-10)</blockquote>

<p>Christians are accustomed to thinking of the death of Christ in regard to humans, but our culture rarely acknowledges God plan for the redemption of His entire creation.  This is partly attributable to the fact that discussions of creation and origins are often separated from the topic of salvation.<sup>17</sup>   In doing so we tend to marginalize Jesus as we argue about Genesis.  Rather than fall into this trap, if we view nature through a theology of the cross, we will see Christ as both the alpha and the omega point in discussions of life’s history and life’s future.  With this perspective, we are more apt to sense our solidarity with the rest of creation as we wait in eager anticipation of a glorious future:</p>
	
<blockquote>The creation waits in eager expectation for the children of God to be revealed. For the creation was subjected to frustration, not by its own choice, but by the will of the one who subjected it, in hope that the <strong>creation itself will be liberated from its bondage to decay and brought into the freedom and glory of the children of God</strong>. (Romans 8:19-21)</blockquote>

<h3>Conclusion</h3>

<p>As part of the Church’s conversation about the problem of natural evil, this essay is meant to be a brief introduction to a “theology of the cross”.  One can explore this concept in greater detail in Murphy’s book <em>The Cosmos in the Light of the Cross</em>.  While there is a lot more to be said, let me conclude with the following observation:  though evolution may not be compatible with <em>some</em> interpretations of Christianity, <strong>evolutionary creation is certainly compatible with the crucified Christ and the theology of the cross</strong>.  In the person of Jesus, God suffers with the world and ultimately redeems it.  As George Murphy puts in, “The world's pains are God's stigmata.”<sup>18</sup></p>

<h3>Explore this Topic Further</h3>

<ul><li>Miller, Keith. <a href="http://biologos.org/blog/series/death-and-pain-in-the-created-order">“And God saw that it was good”: Death and Pain in the Created Order</a>. BioLogos series</li>

<li>Murphy, George L. <em>The Cosmos in the Light of the Cross</em>. Harrisburg, PA: Trinity Press, 2003.</li>

<li>Murphy, George L. “Cross, Evolution, and Theodicy: Telling It Like It Is”. In <em>The Evolution of Evil</em>. Edited by G. Bennett, M.J. Hewlett, T. Peters, and R.J. Russell. Göttingen: Vandenhoeck & Ruprecht, 2008.</li>

<li>Southgate, Christopher. <em>The Groaning of Creation: God, Evolution, and the Problem of Evil</em>. Louisville, KY: Westminister John Knox Press, 2008.</li></ul>

<h3>Notes</h3>
<p class="date">1.  Murphy, George L. <em>The Cosmos in the Light of the Cross</em>.  Harrisburg, PA: Trinity Press, 2003.<br />
2.  Murphy, p34<br />
3.  “CRUX Sola Est Nostra Theologia,” in <em>D. Martin Luthers Werke, Kritische Gesammtausgabe</em> (Weimar: Hermann Boehlau, 1892), 5:172.  The captitalization is in the original.  Cited in Murphy, p26.<br />
4.  Murphy, p108<br />
5.  Murphy, p4<br />
6.  Murphy, p43<br />
7.  Murphy, p3<br />
8.  Some Christians ascribe animal death to some combination of Adam’s fall and Noah’s flood, but this does not resolve the problem that the animals are still suffering and dying through no fault of their own.  See Keith Miller’s BioLogos series <a href="http://biologos.org/blog/series/death-and-pain-in-the-created-order">Death and Pain in the Created Order</a> for the limitations inherent in a fall-based theodicy.<br />
9.  Rudwick, Martin. <em>The meaning of fossils: Episodes in the history of paleontology</em>. Chicago, University of Chicago Press, 1985.<br />
10.  See Jeff Schloss’ BioLogos essay <a href="http://biologos.org/blog/series/southern-baptist-voices-evolution-and-death-series">Evolution, Creation, and the Sting of Death</a><br />
11.  Murphy, p63<br />
12.  Murphy, p122<br />
13.  Murphy, p27<br />
14.  This example is drawn from an evangelical outreach event held by a Christian student group in Innsbruck, Austria.  On campus one day, they started conversations with their classmates by asking the question, “Would you wear an electric chair on your neck?”<br />
15.  Murphy, George L.  <em>The Trademark of God: A Christian Course in Creation, Evolution, and Salvation</em>. Wilton, Conn.: Morehouse-Barlow, 1986.<br />
16.  Murphy, <em>Cosmos in the Light of the Cross</em>, p 31-32.<br />
17.  Murphy, p35<br />
18.  Murphy, p87</p>

]]></content:encoded>
        <pubDate>Tue, 04 Dec 12 04:00:47 -0800</pubDate>
        <dc:creator>Thomas Burnett</dc:creator>
        <!--<dc:date>Dec 04, 2012 04:00</dc:date>-->
      </item>
            <item>
        <title>Series: Behe, Lenski and the “Edge” of Evolution</title>
        <link>http://biologos.org/blog/series/behe&#45;lenski&#45;and&#45;the&#45;edge&#45;of&#45;evolution?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/behe&#45;lenski&#45;and&#45;the&#45;edge&#45;of&#45;evolution?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In this series, we reexamine the claim made by Intelligent Design proponent Michael Behe to have found a limit to “Darwinian” evolution in light of recent results from the laboratory of Richard Lenski.</description>
        <content:encoded><![CDATA[<p>In previous posts in this <a href="http://biologos.org/blog/series/behe-lenski-and-the-edge-of-evolution">series</a>, we evaluated Behe’s claimed “edge” for what evolution can (and allegedly cannot) accomplish by examining the step-by-step path that bacteria in the Long Term Evolution Experiment (LTEE) took to arrive at a mechanism for utilizing citrate under aerobic conditions. In this post, we look at the implications of these results for another of Behe’s related ideas: that of irreducible complexity.</p>
 
<h3>Behe and IC</h3>

<p>Since we have previously explored Behe’s idea of irreducible complexity in an entire <a href="http://biologos.org/blog/series/understanding-evolution-the-evolutionary-origins-of-irreducible-complexity">series</a>, we will not revisit it here in great detail. It is important, however, to reemphasize how Behe defines irreducible complexity (IC). As we noted in the first part of that series, Behe frames his ideas on IC as a counter to Darwin’s ideas of gradualism.</p>

<p>For Behe, the argument for IC is a critique of gradual evolutionary processes, of the kind that Darwin saw as necessary for his theory to hold. When Behe introduces and defines IC in his book <em>Darwin’s Black Box</em>, he has a key quote from Darwin on gradualism explicitly in view:</p>

<blockquote>Darwin knew that his theory of gradual evolution by natural selection carried a heavy burden: "If it could be demonstrated that any complex organ existed which could not possibly have been formed by numerous, successive, slight modifications, my theory would absolutely break down."<br></br>

It is safe to say the most of the scientific skepticism about Darwinism in the past century has centered on this requirement… critics of Darwin have suspected that his criterion of failure had been met. But how can we be confident? What type of biological system could not be formed by “numerous, successive, slight modifications”? <br></br>

Well, for starters, a system that is irreducibly complex. By irreducibly complex I mean a single system composed of several well-matched, interacting parts that contribute to the basic function, wherein the removal of any one of the parts causes the system to effectively cease functioning. An irreducibly complex system cannot be produced directly (that is, by continuously improving the initial function, which continues to work by the same mechanism) by slight, successive modifications of a precursor system, because any precursor to an irreducibly complex system that is missing a part is by definition nonfunctional. An irreducibly complex biological system, if there is such a thing, would be a powerful challenge to Darwinian evolution.<br></br>(<em>Darwin’s Black Box</em>, p. 39) </blockquote>

<p>The definition of an IC system is thus straightforward: it is a matched group of components, where all the components are necessary for the function of the system. The necessity of each component can be demonstrated by attempting to remove it – if the system no longer works if even one component is removed, it is by definition IC.</p>


<h3>Behe and exaptation</h3> 
 
<p>The standard response to Behe’s argument from IC is to discuss the evolutionary concept of exaptation: that new systems and functions are cobbled together from components that have functional roles in other systems already present in the cell. Behe discusses, and ultimately dismisses this idea in <em>Darwin’s Black Box</em> as follows: </p>

<blockquote>In Chapter 2 I noted that one couldn’t take specialized parts of other complex systems (such as the spring from a grandfather clock) and use them directly as specialized parts of a second irreducible system (like a mousetrap) unless the parts were first extensively modified. Analogous parts playing roles in other systems cannot relieve the irreducible complexity of a new system; the focus simply shifts from “making” the components to “modifying” them. In either case, there is no new function unless an intelligent agent guides the setup.
</blockquote>

<p>So for Behe, two points are clear: parts selected for function in one system cannot be exapted for use in other systems since they would require too many modifications; and the emergence of a new function is the indication that an intelligent agent is guiding the process. </p>

<p>Behe has <a href="http://www.evolutionnews.org/2012/11/rose-colored_gl066361.html">responded</a> to my previous posts to claim that the tandem duplication event that brought about the Cit+ actualization event should not be considered a gain-of-FCT mutation under his criteria:</p> 

<blockquote>The gene duplication which brought an oxygen-tolerant promoter near to the citT gene did not make any new functional element. Rather, it simply duplicated existing features. The two FCTs comprising the oxygen tolerant citrate transporter locus -- the promoter and the gene -- were functional before the duplication and functional after. I had written in my review that one type of mutation that could be categorized as a gain-of-FCT was gene duplication with subsequent sequence modification, to allow the gene to specialize in some task. Venema thinks the mutation observed by Lenski is such an event. He has overlooked the fact that there was no subsequent sequence modification; a segment of DNA simply tandemly duplicated, bringing together two pre-existing FCTs.</blockquote>

<p>As an aside, quibbling over whether this mutation constitutes a “genuine gain-of-FCT” mutation is not my purpose here, since the definition is Behe’s to define, and I am not aware of anyone else in the scientific literature who uses Behe’s definitions.  That said, I consider it passing strange to claim that a series of events that produced a gene that has a new sequence and functional properties distinct from either of its component parts does not constitute the production of a new “functional coded element.” If nothing else, it is a functional coded element that has not previously existed, cobbled together from parts of other functional coded elements, displaying new, adaptive properties. If according to Behe’s definition that’s not “new” or a “gain” then I guess it’s not, but that seems to me to torture the words “new” and “gain” beyond recognition. But I digress.</p>

<p>The important point for our purposes, however, lies elsewhere. Note carefully how Behe describes the Cit+ actualization event. By dividing the new aerobic citrate transporter gene into two previously existing FCTs, Behe is describing an exaptation event. The one FCT (the aerobic promoter) starts off as a necessary component of a gene transcribed when oxygen is present. As such it is under selection for that function, which has nothing to do with expressing a citrate transporter. The second FCT (the citrate transporter amino acid coding sequence) is under selection to be a citrate transporter, which has nothing to do with the function of the gene the promoter comes from. The Cit+ actualization event, then, exapts these two FCTs by placing them together to create a new function (which Behe does not mention). </p>

<p>And here’s the kicker: the new system (expression of the citrate transporter when oxygen is present) requires both FCTs in order to work. It has become a system of “well matched, interacting parts that contribute to the basic function” (i.e. transporting citrate in the presence of oxygen) “wherein the removal of any one of the parts causes the system to effectively cease functioning.” </p>

<p>In other words, it is a new IC system – a small and relatively simple system, yes, but nonetheless IC. Now, I’m fairly sure that Behe would not define this system as IC, since the documentation of an IC system evolving would seriously undermine his thesis. I am interested, however, in how he will handle this development, on two fronts. First, he would need to explain specifically why two exapted FCTs that are required together for a basic function does not constitute an IC system (if indeed he wishes to preserve his definition). Secondly, given that he allows for exaptation in this case, he needs to explain how exaptation is not a threat to IC in general. In <em>Darwin’s Black Box</em> he disallows exaptation altogether, but that option is no longer on the table. </p>

<p>In the next post in this series, we’ll continue to explore the evidence for exaptation  as a means to build new FCTs, and go on to examine the implications of this evidence for Douglas Axe’s proposed limit to evolutionary mechanisms.</p> 

<h3>For further reading:</h3>
 
<p>Blount, Z.D., Barrick, J.E., Davidson, C.J. and Lenski, R.E. (2012). Genomic analysis of a key innovation in an experimental Escherichia coli population. <em>Nature</em> 489; 513- 518.</p> 
<p>Michael J. Behe, <em>Darwin’s Black Box: The Search for the Limits of Darwinism</em> (New York: Free Press, 2006).</p>
<p>Michael J. Behe, <em>The Edge of Evolution: The Search for the Limits of Darwinism</em> (New York: Free Press, 2007).</p>
<p>Michael J. Behe (2010). Experimental evolution, loss-of-function mutations, and “The first rule of adaptive evolution”. <em>The Quarterly Review of Biology</em> 85(4); 419-445. </p>]]></content:encoded>
        <pubDate>Thu, 29 Nov 12 08:04:11 -0800</pubDate>
        <dc:creator>Dennis Venema</dc:creator>
        <!--<dc:date>Nov 29, 2012 08:04</dc:date>-->
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        <title>Can Science Ever Know Enough?</title>
        <link>http://biologos.org/blog/can&#45;science&#45;ever&#45;know&#45;enough?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/can&#45;science&#45;ever&#45;know&#45;enough?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>To say something is poetic is not to declare it ultimately untrue, futile and meaningless—it is to say it is more profound and meaningful and true than many other modes of expression.</description>
        <content:encoded><![CDATA[ 
<blockquote><p>There are more things in heaven and earth, Horatio, than are dreamt of in your philosophy.</p>
<p style="float:right;"><strong>—Hamlet Act 1, Scene 5</strong></p></blockquote>

<p>&nbsp;</p>

<p>We live in a world driven by the gods of economics, technology and science.  Particularly in a time of economic austerity, it is tempting to see the arts or humanities as an optional “extra”—a happy by-product of those true engines of society when they are running smoothly. But in this article we will look at how a biblically informed worldview might turn this perspective on its head, and what the humanities might have to tell us about the present contours of the science and faith conversation.</p>

<p>In his iconic 1959 Rede lecture, “The Two Cultures,” CP Snow noted the dysfunctional relationship between science and the humanities, arguing that the situation is principally the result of our educational system in the West. Ken Arnold, from the medicine and arts focused <a href="http://www.wellcomecollection.org/about-us.aspx">Wellcome Collection</a> in London, believes that the split continues today, but with the further extension that </p>

<blockquote>In emerging countries . . .  amongst the middle classes there is a strong pressure to join the ranks of doctors and scientists and engineers because they see that as the place where future economies are growing. . . . In some ways you could almost begin to feel sorry for the arts and the humanities because they seem to be worth less than the sciences.<sup>1</sup></blockquote>

<p>Is Protestant Christianity also peculiarly prone to such thinking? A skepticism of art in religious spaces as a result of iconoclasm and the reformation, combined with a proud history of the protestant work ethic, economic success, and a profound influence on the history of science, might lead Protestants to be more inclined towards the sciences and technology than to the arts. However, there are more corrosive reasons that science has usurped the humanities in our culture than merely educational or theological bias.</p>

<p>In the early 20th century, logical positivists regarded the humanities as expressions merely of our inner states and desires, but having nothing to do with objective reality. Such imperialistic claims to knowledge denied that other knowledge claims referred to any true reality, and were therefore not really forms of knowledge at all. Bertrand Russell writes, </p>

<blockquote>But if there is a world which is not physical, or not in space-time, it may have a structure which we can never hope to express or to know … Perhaps that is why we know so much physics and so little of anything else.<sup>2</sup></blockquote>

<p>Christian scientists are of course very sensitive to this, and work hard to explain that science cannot answer questions of ultimate meaning or the existence of God, which are beyond the scope of science.  Often, this line of thinking can be narrow in focus, delineating the limits of the science, and naming those assumptions made by science that cannot be justified empirically. Such arguments can be very fruitful within this narrow context, but we should not be led into thinking that our true perception of reality is limited to such analytic and evidential approaches.  There are fields of inquiry that science isn’t able to explain (such as metaphysical judgments, ethics, and beauty), and even our confidence in mathematics— upon which so much of science itself is based—rests upon assumptions that cannot be experimentally demonstrated. </p>

<h3>The human condition</h3>

<p>Mathematics and the sciences do seem to provide tools by which we are able to perceive the external world and its regularities. However, the arts and humanities, too, are a way of understanding reality, and they tell us less about external reality than the internal human condition. The problem is that the ‘human condition’ seems to have been relegated by many to the realm of mere desire and subjective feeling and, therefore, not <em>reality</em>. </p> 

<p>The modernist account of science is that, through our reason, we are somehow able to get outside of nature and describe it objectively. The biblical account, though, has human beings as part of the created order, and so embedded in nature—made from the dust of the earth.  Given that, human thought life is also part of the natural world, even despite the fact that it is not best described by the sciences.</p>

<p>The works of Shakespeare, for instance, are part of the created order, as are the poems of Wordsworth, the sculptures of Michaelangelo, and the music of Bach, not to mention children’s nursery rhymes, home decoration, and humming tunes whilst waiting for the bus. As C. S. Lewis wrote, "This is not panache, it is our nature." <sup>3</sup></p>  

<p>A little reflection on life reveals something very strange going on here. Somehow, the mythic ‘war’ between science and religion has become the dominant battleground for defending the Christian faith, and competing explanations of the material world are used as apologetic weapons.  But the reality is that science plays a peripheral role in our experience of life, not least our life as Christians. Of course that is not to deny the enormous impact of science on the material conditions of our lives, or the prevalence of the products of science. Instead, it is to observe that science plays a facilitatatory role, enabling us to carry out the real core business of our lives, which does not revolve around science. Cars, trains and airplanes are modes of transport to take us to work, or to see family, or go on holiday. Social media provide another way of being in relationship with people. Health services are not an end in themselves, but aim to make people well, so that they can get on with their lives. Why then, when life is not about science, does science dominate our way of thinking about life?</p>

<p>In focusing so much energy on opposing positivism are we not being inadvertently drawn into a positivist way of thinking, that science and material explanations of things are, indeed, our basic reality, what is ultimately true?</p> 

<h3>A biblical model</h3>

<p>“We feel,” wrote the philosopher Ludwig Wittgenstein, “that even when all possible scientific questions have been answered, the problems of life remain completely untouched.” <sup>4</sup> Likewise, philosopher Susanne Langer questions any philosophy which claims to be able to explain everything:</p>

<blockquote>Philosophers in every age have attempted to give an account of as much experience as they could. Some have indeed pretended that what they could not explain did not exist; but all the great philosophers have allowed for more than they could explain, and have, therefore, signed beforehand, if not dated, the death-warrant of their philosophies.<sup>5</sup></blockquote> 

<p>Fortunately, the Bible preserves us from total positivist oblivion. There are a great many types of literature represented in the Bible, with the notable exception of scientific writing. If we long to be able to express our deepest emotions, we have the psalms; if we are looking for wise advice, we have the proverbs; if philosophical reflection, Ecclesiastes. There is poetry, song, history, biography, but there is no science. In addition, the Bible refers to the use of the visual arts in, for example, the designs of the tabernacle and temple.  The Bible does seem to think the arts and humanities are fundamental for human life, but it doesn’t seem to think that what we think the physical world is constructed of matters much at all.</p>

<p>Do we sometimes read the Bible more like a science textbook than a novel or a poem?  Most will agree that each type of literature needs to be read in its own way, but lip-service to that idea notwithstanding, recent arguments prove that it is still possible to read a poem with a scientific mentality—looking out for the ‘facts.’  Is that because we have too high a view of science, or because we have too low a view of the humanities? To say something is poetic is not to declare it ultimately untrue, futile and meaningless—it is to say it is more profound and meaningful and true than many other modes of expression.</p>

<p>According to Langer, part of the problem is the priority that has been accorded to discursive language as the only valid way we have of representing reality to each other.  She observes that a study of symbolism shows us that this is actually only one way humans use to abstract from reality, and in fact, the situation even with discursive language isn’t as simple as has been made out. She notes that our sensory organs mediate our perceptions of the world and are already on the job— formulating, framing the world to us—before our cognitive apparatus gets to work. It must be so, or we would not be able to evaluate the importance of the vast array of sensory data we receive and reality would appear as a blur.</p>

<p>A linguistic symbol carries a concept we associate with it, which in turn denotes a reality. In language there is a commonly agreed definition for each word we use, thus enabling communication. But each person also has associations unique to him or her which color any particular concept. Though such personal associations with words are present all at once, they can only be expressed and communicated one at a time, because language is also sequential.</p>

<p>A picture also acts symbolically, though in a different way. Even something as ‘realistic’ as a photograph is likewise a representation of reality and not the reality itself. It also carries with it layers of meaning which reflect the subjective intentions of the person who took the photograph, and opens up for interpretations and associations of the person ‘reading’ the picture. A picture, though, is not sequential. All the information comes at once, and individual blotches of color carry no significance on their own, but only as part of the whole.</p>

<p>No amount of words could ever describe a picture in full. The number of blotches of color and their relations to each other are vast in their complexity, and one could never read words quickly enough to carry the meaning a picture brings in an instant, even if it warrants a far longer period of contemplation.  Indeed, though we are only speaking here of visual perception, the same is true of our other sensory inputs, too: they all carry knowledge in quite distinct and profound ways, whilst we, in line with the Greeks, have tended to give sight a special place as the most ‘objective’ of our senses.</p>

<p>As we dig down into empirical science and explore the mechanisms by which sights and sounds and textures are transmitted and processed by the brain, we discover that the meaning of the sense-data which we perceive and which we attempt to describe is likewise profoundly limited by the use of words—much less mathematics—and that our science, as such, represents a tiny fraction of reality.</p>

<p>To suggest, then, that science is the only true way of representing reality—as positivism has done—or to exclude the humanities from our world, leaves us without a proper or even adequate means of expressing the significance we attach to even the most mundane day-to-day activities. Science is very good at describing the regularities of the physical world, but the experience of being human is no less part of the real natural world than are the structure of proteins or the movement of planets, and science does not have the appropriate tools to explore our inner worlds.</p>

<p>Nowadays it seems that Christian cultural life has also too-often failed to fully acknowledge other ways of representing reality than materialist science—ironic because this state of affairs is so at odds with the Bible’s model of using the arts and humanities to profoundly explore the human condition.   Perhaps it is time to recover that side of the biblical witness, and remind ourselves that there are more ways of representing the world to each other than positivism has ever dreamt.</p>

<h3>Notes</h3>

<p class="date">1. BBC Radio 4, “The Life Scientific”, Tuesday 25th September 2012.<br />

2. Bertrand Russell, “Philosophy”, New York. W.W.Norton &Co, 1927, page 265, quoted by Susanne K. Langer, <em>Philosophy in a New Key</em>, Harvard University Press, 1979, page 88.<br />

3. C. S. Lewis, “Learning in War Time” in <em>Fernseed and Elephants and other Essays on Christianity</em>, Fontana, 1975, page 28.<br />

4. Ludwig Wittgenstein, <em>Tractatus Logico-Philosophicus</em>. Routledge and Kegan Paul, 1951, page 187.<br />

5. Susanne K. Langer, <em>Philosophy in a New Key: A Study in the Symbolism of Reason, Rite and Art</em>. Harvard University Press, 1979, p 5.</p>]]></content:encoded>
        <pubDate>Mon, 29 Oct 12 04:59:52 -0700</pubDate>
        <dc:creator>James May</dc:creator>
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        <title>Willing to be Wrong</title>
        <link>http://biologos.org/blog/willing&#45;to&#45;be&#45;wrong?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/willing&#45;to&#45;be&#45;wrong?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>The debate is often not about evidence, but about making sure that others do not transgress our interpretive boundaries and insist that we&apos;re wrong. We&apos;ve bitten from the tree of knowledge and we love its taste.</description>
        <content:encoded><![CDATA[<h3>What we know</h3>

<p>Genesis is one of my favorite books of the Bible. I read through it probably once every few months and repeatedly grind my Hebrew language skills on its opening chapters. Unlike Leviticus (at least in the opinion of <em>most</em> people I know), the Genesis narrative is exciting and adventurous. Some of our favorite stories come out of the book: Noah and the Ark, The Tower of Babel, Abraham and Isaac, Joseph and the Coat of Many Colors, and so on.</p>

<p>But no story is perhaps as infamous and well known as the creation account (or accounts) as presented in Genesis 1-2. Almost every Christian or Jew, even those less than devout, know the opening words to the tale: “In the beginning, God created the heavens and the earth.” We know that God created the earth in six days. We know Eve was taken from Adam's rib for a companion. We know that God called the general creation “good”, the special creation of man “very good” and, at the very end of it all, took a day of rest (which I'm sure most of us would call “very good.”)</p>

<p>Of course, we know all of this. Yet we challenge it (and are challenged by it), continually, when we consider the variety of interpretations of how this story intersects the world as described by science. With Genesis, are we dealing with a literal scientific account, where “day” means 24-hours; are we dealing with metaphorical “days” in which epochs or periods of time or even processes are being described; or are we readers of a creation mythology from the Ancient Near East that doesn’t have anything directly to do with material origins? Interpretations go on and on, as anyone who has spent any time at all studying the creation debate knows. By and large, however, we can probably categorize Genesis interpreters into three camps: the Young Earth Creationists, the Old Earth Creationists, and the Theistic Evolutionists.</p>

<p>Now, I have the unique benefit of falling into all of these individual camps at one point or another in my life, sometimes even mixing them up. I have made a strong transition from being a die-hard Young Earth Creationist to being convinced that the evolutionary story is, in fact, the more substantiated and evidenced position. I say this with no pride, since my own transition involved many agonizing questions, a whole lot of reading, and a significant internal spiritual battle: what I believed about when and how the earth was created would not only change the way I read Scripture, it would also change certain aspects of how I viewed the Creator. </p>

<p>While I've certainly learned a lot of information on my journey, it was not an accumulation of facts that has kept me following Christ through all the ups and downs, but Jesus himself, and the knowledge that truth is not something which the Christian should find spiritually threatening.  Nevertheless, those same ups and downs—and my internalization of each of these views on creation in turn—has provided me with one simple realization about the debate over scripture and evolution: most of us are not so committed to finding the truth about Genesis and creation as we are to sustaining and maintaining our own interpretive boundaries and the boundaries of the communities which influence us. In other words, the debate is often not so much over Genesis—or even over whether we can all follow the same God when we believe different things about how he created—it's over our own ability to be right. I know this because admitting that I was wrong was the most difficult part of my own transition.</p>

<h3>Interpretive communities</h3>

<p>While I am pretty convinced of the truth of an evolutionary portrait of reality and an ANE reading of Genesis similar to that espoused by scholars like Peter Enns or Bruce Waltke, I can still make this claim about interpretive communities because my intention is <em>not</em> to dissuade others from debating the issues involved, but to ask that we simply recognize our own limits and check them as often as possible.  This is part of following Jesus, is it not? Unfortunately, vigorous debate often deteriorates quickly into screaming matches where proponents of one position or another simply are talking heads, speaking past each other and forgetting our fellowship in Christ. We play into the same interpretive competition that the Pharisee and Sadducee scribes were well known for, each claiming to have a proper interpretation of the Scriptures, but all the while forgetting that interpretive arguments matter exceptionally little if a genuine search for God is not at the forefront.  This is certainly not to insist that the discussions cease, but rather, to insist that these discussions can only be propelled forward if individuals—of whatever stripe—step outside of their own interpretive boundaries and communities and humbly present themselves before God, seeking His truth alone. It is to insist that “system maintenance” must die along with the self, because only then can we allow Scripture to interpret itself. Unfortunately (and this is an issue that goes <em>way</em> beyond the Genesis text), too many of us are more committed to a specific model than we are committed to seeking God’s truth, whatever inconvenience to us that truth proves to be. </p>

<p>In 2006, for instance, I heard a popular and well-trained Young Earth paleontologist make the following statement: “If all the evidence turns against young earth creationism, I will still believe it because that's what the Bible says.” I followed up with him in a conversation a year later over lunch and quickly realized that I did not misunderstand his statement.  For him, the parameters of his convictions were set in concrete and the truth of the overarching story of Christianity rested on these parameters not being crossed. In his view, the Bible absolutely and fundamentally teaches a universe which came into existence 6,000-10,000 years ago; to deny that is to deny Scripture, and if evidence turned up to the contrary one <em>must</em> not alter those parameters but, instead, search (perhaps in vain) for counter-evidence or be willing to live in blind faith. For this paleontologist, confident Christianity hinged on the stability of those borders of interpretation. Transition wasn't allowed. </p>

<p>But I have heard and read statements coming out of the two other camps of thought that share this kind of certainty over interpretation, too. There is a sense of doing injustice to scripture, thereby doing an injustice to Christianity, and, thereby again, doing an injustice to God if one strays from the preferred reading. One Old Earth Creationist remarked in a popular book that an interpretation of Genesis that allows for evolution is a “contradiction in terms” and it's an unfortunate thing to “blame God for it.” Genesis, in the mind of this thinker, specifically precludes any interpretation which leads to the sort of story evolution tells. To think otherwise is to “blame” God for something which he intentionally tells us is otherwise against his nature.</p>

<p>I have equally heard some theistic evolutionists deride—in a very spiritually shallow and personally offensive way—those who do not accept an evolutionary viewpoint. As one who went through an interpretive evolution on biological evolution, I can say confidently that I believe my own transition would have been much easier both intellectually and spiritually if not for feeling as if certain theistic evolutionists accused me of intentionally lying or being mentally ignorant. It seems that all three camps are at least sometimes plagued by the issue of pride—especially in the cases of a few strong advocates. But pride is nothing less than the cement by which interpretive barriers are built, helping them become unmovable walls that protect the interpretive communities within.<sup>1</sup> </p>

<p>On the other hand, one of the great benefits of the fall of positivism (or verificationism) and the rise of postmodernism was the realization that total objectivity among individuals is a false conception. And, since individuals make up communities, neither are camps of thought above error and immune from being wrong. Yet way too many Christians continue to approach Genesis as if we can interpret it on its own terms, completely and totally, without reference to our own location in history and culture. We're still functionally positivists. But it is an illusion that we’re above the interpretive fray, and we must realize time and again that we are subjective individuals, affected by a number of factors and people. We are deeply influenced by those that speak into us, those that we trust, and those that we find credible. As W. Randolph Tate writes, </p>


<blockquote>Interpretations...must be consistent with the established interpretive framework of the interpretive community. The worldview of the interpretive community sets the parameters within which interpretations are accepted or rejected.<sup>2</sup></blockquote>

<p>The Bible takes a slightly different angle and puts it this way: “for all have sinned and fall short of the glory of God.”  In other words, we are not objective data-interpreting individuals but fallen men and women, even as followers of Jesus. </p>

<p>So it’s when groups of folks line up on either side of an issue and make their positions part of their identity that the debate over interpreting Genesis reaches a near stalemate. It's communities against communities, PhDs against PhDs, experts against experts, and—perhaps more internally—interpretive parameters against interpretive parameters. The truth is that as long as we are first and foremost committed to maintaining the community in which we are involved, there will be very little chance of us getting at the real issues and the best conclusions, much less giving an adequate witness to our God, both Creator and Redeemer.</p>


<h3>New eyes, fresh air</h3>

<p>I mentioned earlier that I spent time in all three major camps of thought on this issue. I was a hard-lined Young Earth Creationist, debating on forums and writing creationist papers in college. I argued for the existence of modern-day dinosaurs, major flood geology, and so on. I was convinced I was right, that defending the truth meant digging my heels deeper into the sand. But two questions plagued my thoughts: first, I asked whether Christianity fell to pieces if I was wrong. Second, I asked whether I was committed to Christ or, rather, to myself and my interpretations. With that as my first major paradigm shift, I eventually came to accept an Old Earth view. I sat comfortably within the Old Earth view for several years, but the Lord was still at work in me, and, once again, brought those two questions to my mind.  Back to the books I went, back to the Bible I went, and back to prayer I went.  </p>

<p>Through months of extremely difficult and heart-rending transition, I found myself considering a particular reading of Genesis that I would have regarded as unacceptable as a YEC. But then I was confronted with this even more important point about Christianity: often God finds what is unacceptable to us very acceptable to Him! That included me, personally, and I felt the warmth of God’s grace flow over me. In the wake of that change of heart, people accused me of rejecting my background, my Christian education, and my interpretive communities. And, yet—whether I was right or wrong—I knew God accepted my path towards this new reading of Creation as a genuine search for Him. My spiritual struggle—contrary to what I thought while it was happening—was not a struggle to reject bad data and exegesis, it was a struggle to reject myself. </p>

<p>While the “facts” were important, that spiritual struggle was even more so for me. What was God showing me in the midst of it all? Was thinking differently about the creation making me appreciate the Creator less, or more?  Did reading Genesis differently mean only that I had been wrong, or that it was somehow less true? What did any of this have to do with my sense of calling to love and serve God and my fellow men?   In a way, I’m still figuring this out. But I can absolutely testify that the struggle transformed every single one of these questions. Indeed, for the first time, I believe I saw God as much <em>this-worldly</em> as <em>other-worldly</em>. I saw nature as intimately intertwined with itself, still being woven together by God’s hand. I saw Scripture as a beautiful expression of God’s desire that man should participate in creation. I saw that my fellow men and my fellow Christians were all on a journey, much the way I was. And I saw myself as a flawed, stubborn, and prideful man, yet forgiven for the times I’ve pitted myself and my presuppositions about Scripture against God, its author. </p>

<p>As settled as I am now, I have not forgotten that the common ribbon which ties together all of these transitions is my commitment to keep asking questions within my own circle, too—realizing that God still has much to teach all of us.  I have learned the continuing importance of stepping outside of my camp and making sure I haven’t become merely a product of or a willing prisoner to thinking a certain way, unwilling to consider that it and I might be incorrect. I came to realize that <em>everyone</em> (including myself, of course) has stories and life experiences that become the framework in which they read Genesis 1-2.  And if I stopped pretending that I, myself, could be perfectly objective, then I also had to stop pretending that those in the community that I trusted were <em>necessarily</em> objective, themselves. </p>

<p>Ultimately, I had to be willing to be wrong and to see that my friends might be wrong, too. That’s not something that any of us are “naturally” very good at, but it is possible when we realize that the world does not depend on <em>us</em> being right, but upon Jesus being right. For me, seeking truth rather than presupposition requires that we all be able to approach the communities that have influenced us deeply, and ask not just “what” they say but “why” they say it.  We all have to guard our hearts even more than our heads.  Frequently reminding myself to walk back to the edge of my own camp—to follow Jesus’ example and withdraw to a solitary place—has shown me that there is room to breathe outside our familiar interpretive parameters.  At certain times, I have found it to be the most refreshing air I've ever tasted.</p>

<h3>Notes </h3>

<p class="date">1. Though, admittedly, the theistic evolutionists tend to have a greater sense of leeway when it comes to how the claims of Genesis 1-2 affect Christianity as a whole. It would be an odd thing to say that to <em>not</em> interpret Genesis 1-2 as an evolutionary metaphor is to reject Christianity. As far as I know, most Christian evolutionists are very much willing to acknowledge that Young and Old Earth Creationists are still within appropriate spiritual bounds, even if not scientific ones. It seems to me that if individual theistic evolutionists choose an issue about which to be rigid, it’s the Fall and the existence of Adam.<br />

2. Tate, W. Randolpy. <em>Biblical Interpretation: An Integrated Approach</em>. Peabody, MA: Hendrickson, 2008, p 222.</p>]]></content:encoded>
        <pubDate>Sat, 29 Sep 12 14:22:49 -0700</pubDate>
        <dc:creator>Randal Hardman</dc:creator>
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        <title>Series: Decoding ENCODE</title>
        <link>http://biologos.org/blog/series/decoding&#45;encode&#45;series?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/decoding&#45;encode&#45;series?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>The BioLogos Foundation explains to the findings of the Encyclopedia of DNA Elements (ENCODE) project and responds to the claims that its discoveries challenge the theory of evolution, especially regarding so&#45;called &quot;junk DNA&quot;.</description>
        <content:encoded><![CDATA[<p>In 2003, under the leadership of BioLogos founder Francis Collins, the Human Genome Project sequenced the full human genome, showing us for the first time the order of the 3.2 billion chemical “bases” that make up the rungs of DNA’s double helix structure. The project identified and mapped 23,000 genes that code for proteins, but those genes make up less than 2% of the total sequence—far fewer than originally predicted, given the complexity of humans. While many non-coding sequences were identified as having function as well, there were still vast swaths of the genome that had no obvious function. In fact, what was known about certain classes of sequences suggested that they had no functional role for humans—such as the sequences identified as either transposons or transposon fragments that make up nearly half of our genome. These sorts of sequences seemed to fit into what was popularly known as the “junk DNA” category. </p>

<p>With the complete genome sequence in hand, we knew the sequence and location of our genes, but what we didn’t know was how all those genes are regulated: how do the trillions of cells in our bodies know when to turn on or off all those genes?  How do the hundreds of distinct cell types develop and function together, when they are all running on the same DNA “operating system?”  </p>
<p>That’s where the ENCODE (short for Encyclopedia of DNA Elements) project comes in. Launched in September 2003, shortly after the announced completion of the Human Genome Project, the goal of the ENCODE project is “to build a comprehensive parts list of functional elements in the human genome, including elements that act at the protein and RNA levels, and regulatory elements that control cells and circumstances in which a gene is active.” In other words, the project seeks to understand how the genome “works.”</p>

<p>Early this month, researchers from ENCODE released more than thirty papers presenting their findings. During a <em>Science</em> magazine <a href="http://news.sciencemag.org/sciencenow/2012/09/live-chat-figuring-out-what-dna.html">online chat</a>, the project’s data coordinator, Ewan Birney, explained the outcome:</p>

<blockquote>The ENCODE project aimed to start our understanding of how the human genome works. We know that (nearly) all the information that determines a human is in the genome, as we all start off as single cell with this DNA. However, we had a patchy understanding of how it works, in particular away from protein coding genes.<br /><br />

To work out how the genome works, we used the fact there are many tiny machines (proteins and RNA - RNA is very like DNA) in each of our cells which know how to "read" parts of the genome. By monitoring where these little molecular machines are on the genome, or how parts of the DNA are copied into RNA (there are quite a few different types of RNA as well), we start to gain some insight into the genome.<br /><br />

We did many such experiments, across different cell types (eg, one cell type was very similar to a liver cell type; another was very similar to a white blood cell). This way not only can we see what is similar, we can also see differences between these cell types.<br /><br />

There is a lot more to get to know and understand here - this is definitely closer to the start than the end. But it is a substantial amount of data, and analysis, to start on this journey.</blockquote>

<p>According to the abstract of one of the <a href="http://www.nature.com/nature/journal/v489/n7414/full/nature11247.html">lead papers</a> from <em>Nature</em>, this extraordinary glut of data “enabled us to assign biochemical functions for 80% of the genome, in particular outside of the well-studied protein-coding regions.”  Only 2% of the genome codes for proteins, but 80% or more has <em>some</em> biochemical function.  As a <em>Science</em> <a href="http://www.sciencemag.org/content/337/6099/1159">news article</a> put it, these 30 papers “sound the death knell for the idea that our DNA is mostly littered with useless bases.”</p>

<p>The pro-Intelligent Design organization The Discovery Institute has heralded the discovery as the “demise of junk DNA.”  Casey Luskin writes for their <a href="http://www.evolutionnews.org/2012/09/junk_no_more_en_1064001.html">blog</a> <em>Evolution News</em>:</p>

<blockquote>Let's simply observe that it provides a stunning vindication of the prediction of intelligent design that the genome will turn out to have mass functionality for so-called "junk" DNA. ENCODE researchers use words like "surprising" or "unprecedented." They talk about of how "human DNA is a lot more active than we expected." But under an intelligent design paradigm, none of this is surprising. In fact, it is exactly what ID predicted.</blockquote>

<p>The extent to which the ENCODE project been able to identify function has been surprising—even exhilarating—though scientists have for some time been getting glimpses of the many ways in which segments of DNA can be “active.”  Even in 1970 biologists knew that some non-coding DNA had function, and by 2003 there was a large body of work demonstrating that many non-coding elements acted as promoters, enhancers, insulators, and so on. Indeed, in recent years many have come to appreciate the fact that “junk” was never really an appropriate metaphor in the first place.   Still, because sequencing of multiple genomes has shed such extraordinary light on key evolutionary mechanisms, many geneticists have focused on function primarily in terms of which regions do or do not contribute to the evolutionary fitness of their host, rather than whether they were merely "doing something" biochemically.  What the impressive ENCODE project has done is open a treasure trove of new information that can only accelerate the pace at which researchers are able to explore the incredible subtlety and complexity of DNA, and refine the very concept of “functionality.” </p>

<p>So with all this in mind, is ENCODE a stunning victory for ID, as Luskin believes? Bryan College biologist Todd Wood thinks not.  He <a href="http://toddcwood.blogspot.co.uk/2012/09/everyones-excited-about-encode.html">writes</a>, “I don't think that function equates to design, nor do I think that design requires or predicts function.  They're not the same thing… my understanding of function does not require me to hypothesize God (or an anonymous designer, if you must) as the proximal cause.”  </p>

<p>We agree.  Indeed we would go on to say that evolution and design are not mutually exclusive.  So while finding function is not sufficient to prove design, recognizing that function has arisen by way of evolution does not indicate that God was not at work.  We at BioLogos believe God providentially works out his purposes—his designs—<em>through</em> the elegant processes of evolution, not in opposition to them.</p>

<p>Amazing as the new data are, it only strengthens and enhances our evidence for evolution.  While much of the genome is “doing something” biochemically, it is still likely that the majority of the sequence is evolutionarily neutral (Senior Fellow Dennis Venema discusses the evidence for this “neutrality” in a <a href="http://biologos.org/blog/understanding-evolution-is-there-junk-in-your-genome-part-1">post</a> on our site, including a striking comparison between 29 different mammal genomes and the human genome).  In fact, another  ENCODE researcher participating in the <em>Science</em> magazine chat, John A. Stamatoyannopoulos of the University of Washington School of Medicine, thinks the findings align beautifully with evolutionary theory:
</p>

<blockquote>ENCODE's data provide a unique and powerful window through which to view evolutionary change. We can see those changes directly by lining up the genome sequences of many different organisms -- these line-ups have revealed millions of regions where all the genomes agree, indicating sequences that have been specially preserved by evolution while others have decayed away (ie freely changed their letter codes). We now see that a large proportion of these 'conserved' regions are lighted up by ENCODE annotations, indicating that they are marking spots in the genome that contain important instructions for cell function.</blockquote>

<p>We’ve discussed “junk” DNA previously, including a multi-part series by Dennis Venema, and we’ve received many emails over the past few days asking for our comments on the ENCODE findings. On Monday and Tuesday, Dr. Venema will begin to offer his own thoughts on ENCODE.</p>

<p class="intro">A special thanks goes to Darrel Falk, Mark Sprinkle, Kathryn Applegate, Dennis Venema, and Tom Burnett for their contributions to this post.</p>]]></content:encoded>
        <pubDate>Wed, 26 Sep 12 05:00:35 -0700</pubDate>
        <dc:creator>Stephen Mapes, Dennis Venema</dc:creator>
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        <title>Series: Divine Action in the World</title>
        <link>http://biologos.org/blog/series/divine&#45;action&#45;in&#45;the&#45;world?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/divine&#45;action&#45;in&#45;the&#45;world?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In this talk, Professor Plantinga addresses the fact that many contemporary thinkers—including many theologians—believe that God cannot perform miracles, providentially guide history, or interact in the lives of people, as these activities would be contrary to science.   Plantinga, on the other hand, makes the case that this popular view is mistaken; excluding divine action in the world is not a central feature of natural science itself, but a philosophical or theological preference that has been added on to science (and can just as readily be removed).   Plantinga concludes that it is completely logical to accept the miracles of the Bible and support contemporary science.</description>
        <content:encoded><![CDATA[<p>My talk is entitled “Divine Action in the World.”  I want to talk about a certain kind of objection to Christian belief that some people raise. They claim that central thoughts, central doctrines of Christianity, are contrary to science, and therefore, are suspicious or incredible or such that one can’t sensibly hold them—can’t be rational in accepting them.</p>

<p>There are several different kinds of arguments that people bring along these lines; I want to talk about just one. So first… the Heidelberg catechism, one of the forms of unity of the church I go to (the Christian Reformed Church), says </p>

<blockquote>Providence is the almighty and ever-present power of God, by which he upholds as with his hand heaven and Earth and all creatures and so rules them, that leaf and blade, rain and drought, fruitful and lean years, food and drink, health and sickness, prosperity and poverty. All things, in fact, come to us not by chance, but from his fatherly hand.</blockquote>

<p>And part of the way it comes to us—not by chance, but from his fatherly hand—part of the way God has designed our world, is that there is a great deal of regularity and dependability in our world. Of course, if it were not for this regularity and dependability, we couldn’t do the things that we actually do. I mean, for example, if I just wanted to walk off the stage—if, for example, all the sudden those stairs over there suddenly turned into a ladder going up—well, that would make it really difficult.</p>

<p>If you are trying to build a house, for example, you have this hammer, but all the sudden the hammer turns in to a goose or a pigeon. Again, that would make things really difficult…or if the nail turned into a worm…or if you get in the car and turn the key and the car turns into a camel, things would be really hard, much harder than they are. This regularity and dependability in our world is an essential condition of our being able to live in the world in which we actually do.</p>

<p>If the world were irregular enough, we would not even be able to live in it, but there are also, according to classical Christianity here (the Heidelberg catechism, for example) there are also special divine actions; sometimes God does things specially. There are miracles in Scripture: the parting of the Red Sea, for example, Jesus walking on water, Jesus changing water into wine. There are miraculous healings: Jesus rising from the dead, Jesus raising Lazarus from the dead, and so on. And according to classical Christians, many of them, perhaps most of them, are special divine actions. God, for example, responds to prayers. He works in the hearts and minds of his children to effect sanctification. There is, what Calvin called, the internal testimony or witness of the Holy Spirit, and there is what Thomas Aquinas called the internal instigation of the Holy Spirit. So, these things are all special actions on the part of God. God constantly causes events in the world. Ok, so far fair enough—what is the problem?</p>

<p>Many theologians seem to think there is a science-religion problem here. I don’t think any of the theologians of Biola think this, (I don’t know, but I doubt it) but many theologians do. For example, Rudolf Bultmann says, “The historical method,” which of course he thinks that is the method we should use, “includes the presupposition that history is a unity in the sense of a closed continuum of effects in which individual events are connected by the succession of cause and effect. This continuum, furthermore, cannot be rent by the interference of supernatural, transcendent powers.”</p>

<p>That’s what he says. Alright, there is this continuum that cannot be rent by the interference of supernatural (that would be God) or transcendent powers. So, it is a little bit like the laws of the Medes and Persians. You probably remember Daniel. Daniel was a favorite of King Darius, and well, the other courtiers became jealous of Daniel (they didn’t like it that the king liked him so well). So, they came to the king and said, “Oh king, live forever, we think it would be a great idea if you passed an edict to the effect that you alone can be worshipped. Everybody has to worship you and nothing else.”  Well the king thought that over for a minute, and that sounded pretty good to him so he said, “I guess that it is a pretty good idea.” So he made this edict; he made this declaration: “Only King Darius is to be worshipped—no one else, nothing else.”</p>

<p>These courtiers knew that Daniel worshipped God, and they thought probably Daniel would keep right on worshipping God despite this edict. So they were watching Daniel, and he was, in fact, worshipping God. So they came to the king.  Now the penalty for worshipping something else was to be thrown into the lion’s den and they said, “Well, king live forever, looks like Daniel has been violating this edict. You have got to throw him in the lion’s den.”</p>

<p>Well, the king didn’t want to do this because he really liked Daniel. He thought this was a miserable way to proceed, and he didn’t want to do it, but then they said to him, “O king live forever, and remember a law of the Medes and Persians cannot be abrogated, even by the king himself.” So once it’s put in place, not even the king himself can change it or abrogate it or go against it.</p>

<p>That is sort of the suggestion that you get here from Bultmann. Bultmann thinks, “Maybe God created the world and set it up in a certain way, but once he did that, not even he can interfere in it”—he uses that word interference—“not even he can do anything in it. He just has to keep hands off.” It is like the law of the Medes and the Persians.</p>

<p>Another theologian who agrees is John Macquarrie, who says,</p>

<blockquote>The way of understanding miracle (and that would be one kind of special divine action) that appeals to breaks in the natural order and to supernatural intervention belongs to the mythological outlook, and cannot commend itself in a post-mythological climate of thought. The traditional conception of miracle is irreconcilable with our modern understanding of both science and history. Science proceeds on the assumption that whatever events occur in the world, can be accounted for in terms of other events that also belong within the world, and if on some occasion, we are unable to give a complete account of some happening, the scientific conviction is that further research will bring to light further factors in the situation that will turn out to be just as imminent and this worldly as the factors already known.</blockquote>

<p>Ok again, no room there for special action. And the third thinker here, Langdon Gilkey (still another theologian), says something similar, but I will pass. I will not read that one in the interest of saving a little bit of time, but these three theologians, plus many others want to assert that there is something wrong with the idea of God acting in the world, acting in the world in a way that goes beyond creation and sustaining, or creation and holding things in existence. So they think, “Ok, God created the world; God sustains it in existence”…that is ok with them, but anything beyond that, God performing any miracles, raising Jesus from the dead, or for that matter working in somebody’s heart and mind in a special way, that, they say, is a real problem.  The question is, what is the problem?</p>

<p>Well, the next little bit here…according to the Christian and theistic idea, God is a person; he has knowledge, loves, and hates. He has aims and ends. He acts on the basis of his knowledge to achieve his ends. He is all-powerful, all-knowing, and wholly good. Thirdly (noted above by the Heidelberg catechism), God has created the world. Fourth is God conserves and sustains and maintains in being this world he created, but fifth, at least sometimes, God acts in a way going beyond creation and conservation in miracles, but also in his providential guiding of history, his working in the hearts of people, his internal instigation of the Holy Spirit, and so on, and it is with that fifth category that these people have a problem. It is God’s special action in the world—action beyond conservation and creation—and miracles would be an example.</p>

<p>So we might think of these theologians as endorsing what we could call hands off theology. God has got to keep his hands off. God could create the world. God conserves the world, sustains it in being, but he can’t do anything else—that is as far as he could go. It is hands off theology, and Bultmann, even in this context, even talks about interfering. I mean if God did something in the world that would be interfering, which, when you think about it, is a sort of strange thing to say—I mean if God created the world, he is the omnipotent, omniscient, holy, good creator of the world—when you accuse someone of interfering, you are saying they are doing something they should not be doing, right?</p>

<p>So Bultmann thinks if God did something in the world that would be interfering, and he should be ashamed of himself. Ok, now why is this a problem? Their suggestion is that somehow it is contrary to science. It is contrary to science the suggestion that God acts specially in the world. I didn’t read that bit, but Gilkey says, "The causal nexus in space and time which the enlightenment science and philosophy introduced into the western mind is also assumed by modern theologians and scholars. Since they participate in the modern world of science, both intellectually and existentially, they can scarcely do anything else.”</p>

<p class="intro">From a presentation sponsored by Biola University’s <a href="http://cct.biola.edu/" target="_blank">Center for Christian Thought</a>, and delivered February 12, 2012 at EV Free Church, Fullerton, CA.  Used by permission.</p>]]></content:encoded>
        <pubDate>Tue, 04 Sep 12 04:00:33 -0700</pubDate>
        <dc:creator>Alvin Plantinga</dc:creator>
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        <title>Freedom and Grace in Tennessee</title>
        <link>http://biologos.org/blog/freedom&#45;and&#45;grace&#45;in&#45;tennessee?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/freedom&#45;and&#45;grace&#45;in&#45;tennessee?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Towards the end of the last school year, the Tennessee legislature passed the Teacher Protection Academic Freedom Act, a law that became more popularly known as the “Monkey Bill.”  I was doing research in a Tennessee high school biology classroom the morning that I learned that the bill had passed.</description>
        <content:encoded><![CDATA[<p>Towards the end of the last school year, the Tennessee legislature passed the <a href="http://biologos.org/uploads/projects/Tennessee_HB0368.pdf">Teacher Protection Academic Freedom Act</a>, a law that became more popularly known as the “Monkey Bill.”  I was doing research in a Tennessee high school biology classroom the morning that I learned that the bill had passed, and as the teacher informed her uninterested class about the details, she made the comment that we are "devolving" in the great state of Tennessee instead of "evolving." As a Christian, a biologist, and a soon-to-be educator, I was inclined to agree.</p>

<p>In Tennessee and across the country, many others weighed in on the subject over the next few weeks, including two essays (<a href="http://biologos.org/blog/teaching-science-in-tennessee">here</a> and <a href="http://biologos.org/blog/teaching-the-whole-controversy">here</a>) on the BioLogos Forum.  But soon after that, other issues crowded that story off the front page. Now, though, teachers and students across my state are returning to science classrooms, and we will all get to see what effect the law has in practice. Again speaking as a Christian, a biologist, and educator and drawing on all three of those perspectives, I’d like to offer my own reflections on the bill’s likely effect on Tennessee teachers and students, beginning with this excerpt from the bill itself: </p>

<blockquote> The teaching of some scientific subjects, including, but not limited to, biological evolution, the chemical origins of life, global warming, and human cloning, can cause controversy . . . The state board of education, public elementary and secondary school governing authorities, directors of schools, school system administrators, and public elementary and secondary school principals and administrators shall endeavor to assist teachers to find effective ways to present the science curriculum as it addresses scientific controversies.  (Tennessee HB368 / SB893)</blockquote>

<p>As an evangelical, I think this bill could be more detrimental than helpful to Christian teenagers’ faith. Many students who are particularly interested in the sciences and theory of evolution are already in the uncomfortable position of hearing pro-Intelligent Design doctrine from the pulpit on Sunday and then listening to their science teacher’s evolution instruction on Monday.  I was one of those students—sitting in more than one congregation under pastors who were particularly antagonistic to the theory of evolution, and who made not-so-subtle comments that it cannot co-exist with authentic Christian faith. Having a keen interest in the sciences and wanting to explore the data so widely accepted by the scientific community, I felt confused and ostracized in my church. I wondered if I would have to choose between my faith and intellectual integrity. The church family I trusted clashed with the science that I also trusted, causing a near catastrophe for my faith. I am thankful to the few people who offered me grace, allowing for my questioning of some of what I heard in church without labeling me a heretic. </p>

<p>Though the conservative Christian community may view this bill as a “win for the faith,” it is actually a loss if it reinforces the idea that this is simply an issue of science vs. scripture. Evolution is central to modern biology; trust in the authority of the Scriptures is central to Christian faith.  But this fight mentality between the two established communities is detrimental to our young teenagers who are seeking to grow in faith, but who cannot seem to reconcile scripture and scientific data.  We need them to seek after that reconciliation, not be told it can’t be done. Whatever they are hearing from the pulpit, the science classroom should be the one place that students can learn science. Students may well emerge with bitterness towards the church for dismissing the evidence of evolution not only so quickly, but in what is so often a haughty and condescending manner. Worse yet, students may emerge with bitterness that they were forced to choose between faith and intellectual integrity. Is this really an all or nothing argument? Are the two truly diametrically opposed?</p>

<p>In my world, these two have reconciled, and they now co-exist in peace. It has been a very long road to get there and I could not have done it without both access to good data and the freedom to explore it.  Having taught teenagers in an evangelical church for years and having observed in many biology classrooms as well, I know that many students are still struggling for this same reconciliation. That reconciliation is perhaps most easily attained when the seeking student is able investigate evolution in the science classroom without harassment from opposing religious forces. With this freedom, the student may very well realize that the fear that he/she may have regarding evolution is really just a fear of the unknown, and that it is possible to have intellectual integrity and to praise God for initiating and sustaining the evolutionary process.</p>

<p>In Tennessee’s science classrooms there are surely many teachers who begrudge being told that they <em>must</em> teach evolution, and who are relieved that they can now present it as a controversy and/or allow Intelligent Design as an alternative. They, too, will likely see this law as a “win.” But isn’t public science education is about giving students an accurate picture of the state of science, not about teachers’ philosophical opinions? As has been pointed out before, most Tennessee science teachers have not had the training to teach about religion or philosophy; they have been trained to teach about the basic principles of the biological world. </p>

<p>This bill may be particularly frustrating, then, to teachers who do simply want to teach science. From the many hours I’ve spent in secondary biology classrooms this year, I can say for sure that time is of the essence.  Tennessee teachers have barely enough instructional time to cover what students must know to pass the end-of-course biology test required for graduation; they do not have extra time to spend covering material that is not science. I have seen classroom arguments over evolution’s feasibility that ate away precious instruction time and only left a greater rift between the two camps and no doubt, a frustrated teacher. News of the Intelligent Design movement’s success in creating political and legal controversy is misplaced content in the secondary biology classroom. </p>

<p>Furthermore, as it allows teachers to frame biological evolution in terms of “controversy”— something that is a topic for debate—this law will likely not result in students who are more engaged in understanding science, but instead, only in more confusion (and possibly antagonism) in the classroom. Educators welcome debate in many cases because debate encourages critical thinking that leads to “formal thought,” the Holy Grail of Piaget’s Theory of Cognitive Development.  But the practice of science is about proposing hypotheses and testing the data, not primarily argumentation. And if the science community is not “debating” evolution, why should high school science students be debating evolution as part of their biology curriculum? </p>

<p>The bill is correct in stating that the purpose of science education is to “inform students about scientific evidence” and “help students develop critical thinking skills necessary to becoming intelligent, productive, and scientifically informed citizens.” I certainly agree, though I question whether it needed to be legislated.  Rather, my answer is: “Let’s actually do it!” Before bringing “debate” and “controversy” about scientific theories into the classroom, let’s instead teach our students about sound scientific practice; let’s give them opportunities to learn how to research and to employ the scientific method in everyday life. Let’s focus on teaching them about observing the indicators of climate change, the intricacies of DNA, conservation of ecosystems, and the principles of molecular and cell biology. Let’s give them the tools—specific to science— that help them think critically and work out problems, rather than undermining faith in those very practices and the community of people that uses them every day.  Let’s <em>not</em> teach them to live in denial of the ordinary dependability of science, let’s <em>not</em> teach them to distrust scientists who have no interest in “debate,” but want to understand the world God made.</p> 

<p>In Tennessee and elsewhere, let’s give both our students and those scientists the grace and support they need to merge authentic faith and intellectual integrity. </p>
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        <pubDate>Sun, 26 Aug 12 05:00:07 -0700</pubDate>
        <dc:creator>Katelin A. Fields</dc:creator>
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        <title>Series: Asa Gray and Charles Darwin Discuss Evolution and Design</title>
        <link>http://biologos.org/blog/series/asa&#45;gray&#45;and&#45;charles&#45;darwin&#45;discuss&#45;evolution&#45;and&#45;design?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/asa&#45;gray&#45;and&#45;charles&#45;darwin&#45;discuss&#45;evolution&#45;and&#45;design?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Many Christians believe that they face a painful choice&#45;&#45; either life was designed by God or it is an evolutionary product of natural selection.  Charles Darwin himself believed in this dichotomy, and people ever since have felt the need to &quot;choose sides&quot;.  However, looking back at history, we find that one of Darwin&apos;s chief scientific colleagues, Asa Gray, did not share this perspective. In this three&#45;part essay, part 1 charts the relationship of Asa Gray and Charles Darwin.  Part 2 describes Darwin&apos;s struggle with the problem of natural evil and design in nature, and part 3 explores how Asa Gray was able to embrace evolution without rejecting the idea of design.</description>
        <content:encoded><![CDATA[<h3>Asa Gray</h3>

<p class="caption-left"><img src="http://biologos.org/uploads/static-content/asa_gray_image_3.jpg" alt="" height="374" width="250"  /><br />Asa Gray</p>

<p>If Thomas Huxley earned the title of "Darwin's bulldog," then Asa Gray should be remembered as "Darwin's dove." Whereas Huxley enjoyed a good fight in his defense of Darwin's theory, Gray sought to mediate and bring sides together around a common understanding of "good science." As Darwin's strongest and most vocal scientific ally in the United States, Gray recognized the scientific importance of Darwin's efforts for the growing professionalism of biological researchers.</p>

<p>But as an orthodox Christian, a Presbyterian firmly devoted to the faith expressed in the Nicene Creed, Gray saw in Darwin's theory both evidence for his philosophical commitment to natural theology and support for his opposition to the idealism advocated by Louis Agassiz and the <em>Naturphilosophen</em> in both Europe and America. Indeed, Agassiz's advocacy of Platonic forms as a basis of biological understanding (e.g., "A species is a thought of the creator")<sup>1</sup> would be a major source of American opposition to Darwin's theory.</p>

<p>Professor of botany at Harvard during most of the middle half of the nineteenth century, Gray was one of the few members of the scientific community to whom Darwin revealed his theory before the publication of <em>On the Origin of Species,</em> and, from what I can tell, the only American. Gray and Darwin met briefly in January 1839 during one of Gray's visits to England. Later, during the 1850s, Darwin wrote Gray on several occasions requesting information--a practice that Darwin frequently employed.  In 1854, Darwin's friend and confidant, Joseph Hooker, showed Darwin Gray's review of Hooker's <em>Flora of New Zealand</em>, in which Gray had argued strongly against Louis Agassiz's idealism and had raised questions from his own work on the stability of species. Gray was not yet ready to deny their permanence, but hybrids and other observations were beginning to trouble him.</p>

<p>The next year Gray wrote a lucid and penetrating positive evaluation of Alphonse De Candolle's two-volume <em>Géographie botanique raisonnée</em>, a pioneering work dealing with plant geography and distribution from a statistical perspective. Hooker had sneeringly dismissed the work. In A. Hunter Dupree's authoritative biography of Gray, he describes Gray's puzzlement at Hooker's response in these terms:</p>

<blockquote>Although in the long view Gray's evaluation of the epoch-making nature of De Candolle's book was more justified than Hooker's sneers, [Gray was confused by his response, for] Hooker seemed to be talking with a more comprehensive theory definitely in mind, some reason for taking his position, which he did not divulge and which his friend [Gray] did not possess.<sup>2</sup></blockquote>

<p>Darwin, however, saw in both Gray's review of Hooker's book and in his comments on De Candolle's tome that Gray was troubled by some of the same empirical data that had been bothering him. In April 1855, Darwin wrote Gray to urge that Gray update his <em>Manual of the Botany of the Northern United States</em> first published in 1848, and especially to address the issue of the range of Alpine plants in the United States. Specifically, he said: "Now I would say it is your duty to generalise as far as you safely can from your as yet completed work."<sup>3</sup></p>

<p>Behind this request was Darwin's desire to test his impression that Gray could make a good ally. Gray passed the test, and finally, in July 1857, Darwin let Gray in on his theory of the transmutation of species. Gray was never an uncritical supporter, and there are many evidences in the correspondence between these two scientists that Gray was willing to challenge Darwin and disagree with some of his conclusions. Nevertheless, Gray saw the importance of Darwin's work and the ways in which it provided answers to the troublesome issues that he had confronted in his own botanical efforts.</p>

<p class="caption-center"><img src="http://biologos.org/uploads/static-content/asa_gray_image_2.jpg" alt="" height="294" width="570"  /></p>

<h3>Gray responds to Darwin's theory</h3>

<p>After considerable interchange--one might even say debate--among Gray, Darwin, and Hooker, Gray wrote to Hooker in October 1859 (one month before the publication of <em>On the Origin of Species</em>) saying that he had absolutely no problem with cognate species arising by variation. He did, however, raise a concern that would be the source of much future discussion. He wondered about Darwin's "carry[ing] out this view to its ultimate and legitimate results,--how [do] you connect the philosophy of religion with the philosophy of your science." He added: "I should feel uneasy if I could not connect them into a consistent whole--i.e., fundamental principles of science should not be in conflict."<sup>4</sup></p>

<p>When <em>Origins</em> was published, Gray wrote a clear, positive, yet critical review in <em>The American Journal of Science</em>. Aware of mounting religious opposition, he ended his review by arguing that whereas one could use Darwin's theory in support of an atheistic view of Nature, one could use any scientific theory in that way. He wrote:  "The theory of gravitation and ... the nebular hypothesis assume a <em>universal and ultimate</em> physical cause, from which the effects in nature must necessarily have resulted."<sup>5</sup> He did not see the physicists and astronomers who adopted Newton's theories as atheists or pantheists, though Leibniz earlier had raised such reservations.  And a similar situation existed with the origin of species by natural selection.  Darwin, Gray continued: "merely takes up a particular, proximate cause, or set of such causes, from which, it is argued, the present diversity of species has or may have contingently resulted. The author does not say necessarily resulted."<sup>6</sup></p>

<p>This far Gray could go with Darwin. But there was a point at which he parted company, and that was the fortuitous <em>randomness</em> of the process that Darwin's theory seemed to imply.</p>

<p class="intro"> In part 2, Dr. Miles describes Darwin's struggle with the problem of natural evil and design in nature.</p>

<h3>Notes</h3>

<p class="date">1. Cited in A. Hunter Dupree, <em>Asa Gray: American Botanist, Friend of Darwin</em> (Baltimore: The Johns Hopkins Press, 1959), 151.
2. Ibid., 236.<br> 
3. Charles Darwin, <em>More Letters of Charles Darwin</em>, ed. Francis Darwin, (New York: D. Appleton and Company, 1903), 252.<br>  
4. Dupree, <em>Asa Gray</em>, 266. <br> 
5. Asa Gray, "The Origin of Species" in <em>Darwiniana</em> (Cambridge, MA: The Belknap Press of Harvard University, 1963), 44. <br> 
6. Ibid.</p>
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        <pubDate>Sat, 04 Aug 12 07:21:11 -0700</pubDate>
        <dc:creator>Sara Joan Miles</dc:creator>
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        <title>Gracious Dialogue</title>
        <link>http://biologos.org/blog/gracious&#45;dialogue?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/gracious&#45;dialogue?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Our desire to engage in gracious dialogue with fellow believers who reject biological evolution has been receiving increased attention in both the Christian and secular press.  More importantly, we are being joined in this reconciling project by our brothers and sisters in Christ who have often been defined primarily as our “opponents”.</description>
        <content:encoded><![CDATA[<p>There are two main reasons why it is critically important that science & faith conversations between Christians be conducted with grace and humility.  First, as all of us see “through a glass darkly,” we need the insights of the entire Christian community (from scientists, to theologians, to Biblical scholars, to pastors to poets) in order to achieve the best understanding of the world God called us to cultivate and rule as his regents. No one discipline or perspective is sufficient in itself, whether focused on God’s Word or God’s world.</p>

<p>But it is also important that we engage believers who disagree with us (on human origins, especially) with charity and humility as a witness to our common identity in Christ—that we may be known by our love for each other in tandem with our demonstrated love for the secular world that does not yet claim Christ as Lord and Savior.</p>  

<p>While the BioLogos Foundation is committed to both of these aspects, we are especially pleased that our desire to engage in gracious dialogue with fellow believers who reject biological evolution has been receiving increased and very favorable attention in both the Christian and secular press.  More importantly, we are being joined in that reconciling project by those who have often been defined primarily as our “opponents,” rather than as brothers and sisters in Christ.</p>

<img src="http://biologos.org/uploads/static-content/CT_Cover.png" alt="" height="189" width="139" style="float:right;margin:0px 0px 0px 10px;" />

<p>First, <a href="http://www.christianitytoday.com/ct/2012/july-august/a-tale-of-two-scientists.html?paging=off">A Tale of Two Scientists</a>, the cover story of Christianity Today’s July-August 2012 issue, featured the accounts of BioLogos Foundation President Darrel Falk and Todd Wood, Director of the Center for Creation Research at Bryan University.  Though Wood does not accept biological evolution on theological grounds, both men recognize its strength and explanatory power. But more importantly, both reject the warfare model between science and faith (and between Christians who think differently) as being, in Wood’s words, “detrimental to the Church.” </p>

<p>Second, our Southern Baptist Voices series has become a model for how such dialogue can be pursued, even in the sometimes no-holds-barred context of the web.  Several installments in our ongoing dialogue with Southern Baptist theologians have been covered by the Erin Roach of the Baptist Press (on <a href="http://www.bpnews.net/bpnews.asp?id=37901">May 25th</a> , <a href="http://www.bpnews.net/bpnews.asp?id=37981">June 6th</a>, and <a href="http://www.bpnews.net/bpnews.asp?id=38198">July 3rd</a>) and on on July 19th by Lillian Kwan of the <a href="http://www.christianpost.com/news/evangelicals-debate-theistic-evolution-historical-adam-78570/">Christian Post</a>.  And just this past week, Associated Press reporter Travis Loller highlighted the series in an article picked up by the <a href="http://www.huffingtonpost.com/2012/07/18/evangelical-scientists-debate-evolution_n_1683480.html">Huffington Post</a>, the <a href="http://www.washingtonpost.com/national/health-science/evangelical-scientists-debate-evolution-online-with-southern-baptist-seminary-professors/2012/07/18/gJQAqBsstW_story.html">Washington Post</a>, and many other news outlets across the country. </p>

<p>To make it easier for readers to find the entire Southern Baptist Voices series and join in the conversation themselves, we’ve launched a new landing page here: <a href="http://biologos.org/blog/sbv">Southern Baptist Voices</a>.  It is our hope and prayer that this initiative will set the stage for future dialogue between evolutionary creationists and those who hold other perspectives, as well.</p>


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        <pubDate>Sat, 21 Jul 12 12:50:42 -0700</pubDate>
        <dc:creator></dc:creator>
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        <title>Naming &apos;the God Particle&apos;</title>
        <link>http://biologos.org/blog/naming&#45;the&#45;god&#45;particle?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/naming&#45;the&#45;god&#45;particle?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>The discovery of the Higgs boson would certainly be a breakthrough for particle physics and cosmology, but would such a finding also radically redefine theology’s understanding of God or challenge the existence of such a deity?  Is there actually any theological or religious significance in Higgs physics at all?</description>
        <content:encoded><![CDATA[<p class="date"> The image above describes an "event" (proton-proton collision) recorded in 2012 with the CMS detector at CERN's Large Hadron Collider. According to CERN, "the event shows characteristics expected from the decay of the SM Higgs boson to a pair of Z bosons, one of which subsequently decays to a pair of electrons (green lines and green towers) and the other Z decays to a pair of muons (red lines). The event could also be due to known standard model background processes. ATLAS Experiment © 2012 CERN </p>


<p>Judging from the flurry of headlines over the past week, one might be tempted to think that proof positive of God’s existence (or lack thereof) had just appeared out of a 27-km-tunnel buried beneath the Swiss-French border. This frenzy of news headlines and blog titles hailed the recent news that CERN’s Large Hadron Collider has discovered a brand new particle of a mass of 125-126 GeV, which is assumed to be the Higgs boson, or the so-called “God particle.” The discovery of the Higgs boson would certainly be a breakthrough for particle physics and cosmology, but would such a finding also radically redefine theology’s understanding of God or challenge the existence of such a deity?  Is there actually any theological or religious significance in Higgs physics at all?</p>

<p>The short answer is “no,” which becomes apparent when one considers the widely-reported story of how it got named. In 1993, Nobel Laureate physicist Leon Lederman, along with science writer Dick Teresi, wrote a book detailing the history of particle physics starting with Pre-Socratic Greek philosophy Democritus and culminating with the hunt for the Higgs boson. Until this latest discovery, the Higgs boson was the elusive final missing piece of the puzzle known as the Standard Model—a collection of the fundamental particles that constitute our universe and the complex and mathematically-sophisticated relationships between them. Considering how incredibly difficult finding the Higgs boson was proving to be, Lederman wanted to name the book after that “goddamn particle,” according to some of his collaborators. His editor, however, would not allow it and so the name was shortened to “The God Particle: If the Universe Is the Answer, What is the Question?” And thus ‘the God particle’ was born, carrying with it more than enough social baggage for such a miniscule particle.</p>

<img src="http://biologos.org/uploads/static-content/Zosia_Krusberg.jpg" alt="" height="340" width="250" style="float:right;margin:0px 0px 0px 10px;"  />

<p>Particle physicist Dr. Zosia Krusberg (at right) is visiting assistant professor of physics and astronomy at Vassar College and thinks “the term ‘god particle’ is unfortunate. The Higgs boson is no more (or less) divine or spiritually significant than any other elementary particle within the standard model of particle physics.” It may be fundamental to explaining one of the most basic characteristics of the universe—namely the existence of matter and mass in addition to energy—but “it is no more (or less) important than any other physics principle underlying the Standard Model.” </p> 

<p>Last week’s discovery was monumental in that it may have finally provided experimental evidence for the Higgs Mechanism and defined the specific energy of the resulting Higgs boson, but even this “breakthrough” for particle physics leaves many scientific questions unresolved. Finding the Higgs boson completes the Standard Model, but it does not do away with many other questions and shortcomings of the current state of particle physics, such as the constituent particles of dark matter, a quantum theory of gravity, and other “mathematically subtle problems.” Not to mention that there is still significant work to be done to determine the exact nature of this newly-found particle. According to Dr. Krusberg, this particle might behave just as the Standard Model predicts or it could instead be “a Higgs-like particle that will serve as a gateway into explorations of physics beyond the Standard Model." Krusberg continued, “And I guarantee that it is this latter scenario that most of us are hoping for: physicists love nothing more than discovering the shortcomings of their theories, since this is the first step toward more fundamental theories with even more predictive power!”</p>

<p>No, finding the Higgs boson does not answer all the questions of particle physics, much less lend insight into the existence (or not) of God.  For that reason, Dr. Krusberg (like most physicists) bemoans the term ‘God particle’ and insists, “There really is nothing either literally or metaphorically god-like about the Higgs boson.”  Indeed, one writer for the British journal The Guardian reached such a point of frustration about the name that he ran a <a href="http://www.guardian.co.uk/science/blog/2009/jun/05/cern-lhc-god-particle-higgs-boson ">competition for alternatives</a>. The winner was “the champagne flute boson,” ostensibly because the bottom of a champagne bottle is an excellent and oft-used demonstration of the energy potential of the Higgs Mechanism. Or then again, perhaps it is simply because physicists thought that finally finding this shy particle would call for some of the bubbly.</p>

<p>On the other hand, some science writers and scientists can appreciate the ‘educational benefits’ of such a mysterious and controversial name because it attracts the attention of the general public and puts a relatable face on an extremely esoteric physics concept. Krusberg herself admits that “People are naturally drawn to the mysterious and the controversial, providing educators with great teaching opportunities.” But she worries about the larger social implications involved in “mixing the vernacular of physics and spirituality,” not least because such uncritical mixing can lead the non-scientific community to draw conclusions about the authority and reach of science that are not justified.</p>

<p>Understanding that the Higgs boson is not the literal stuff of God and that it does not prove or disprove God’s existence (as the name seems to suggest) extinguishes the fire under any sort of religious outcry. But this does not mean that its discovery is irrelevant to the discussion of science and faith, nor to the Christian community as a whole. As Dr. Krusberg remarks, “The recent discovery of [this] new boson at the LHC perfectly embodies the scientific process at its best (and thereby illustrates to the public why and how science works).” Scientific exploration of nature is not a fool-proof endeavor; healthy skepticism and accountability to a wide community of other researchers are absolutely critical to its success. But such evidence of the power and finesse of well-executed science as we saw last week is a testament to our ability to explore and understand the ‘how’ of the universe. God has equipped humanity with the desire, the intellectual abilities, and the collective will to recognize and explore the cosmic order and beauty of his creation. God has made our home knowable, and has given us the tools and capacities by which to know it.</p>

<img src="http://biologos.org/uploads/static-content/Tucker_Higgs_2_sm.jpg" alt="" height="194" width="300" style="float:left;margin:0px 10px 0px 0px;" />

<p class="date"> At left, Cern researchers present their findings to a few hundred of their colleagues in Melbourne, Australia.  Image © 2012 CERN </p>

<p>It is valuable, then, for the Christian community to understand and appreciate how science works, in part to recognize that there are many instances in which science and the church work in tandem in order to better understand and better serve the world. But I think there is something else we can draw from the story of the Higgs boson, too. The nickname ‘the God particle’ has touched nerves in religious communities because it implies that science has the ability to prove or disprove divine existence by physical means.  Even though the physics community is by no means claiming insight into the divine, it is sometimes assumed by the religious community that scientists view their work as chipping away at God’s existence when they begin to understand something that was previously unknown, or known only “by faith” in esoteric theories and models.</p>

<p>And yet, regardless of motives or metaphysical interpretations, perhaps physicists' search for the Higgs boson <em> is in fact</em> an apt picture of our own search for God.  How many times have we stared up at the starry ceiling in times of crisis and prayed fervently for some kind of sign from God to assure us of his presence? And how many times has that much-desired evidence appeared only in retrospect, when we look back to see God’s hand faithfully and elegantly working in ways inscrutable at the time? It took a <em>community</em> of physicists to discern the presence of the Higgs boson. But even so, they could only do so after the fact from the cascade of particle decays it sparked; they could not observe the particle itself directly. In a similar way, though we often do not see the working of God directly, “in the moment,” we still trust in his presence and providence, often depending on friends, family and the community of the church to help us see his hand in hindsight.  </p>

<p>So while the discovery of the Higgs boson does not itself explain God, we rejoice at the subtle yet striking new insight we have into God’s creative genius via the Higgs boson and at the way God gives evidence of his faithfulness in the ordered creation itself. Perhaps, however, the greatest insight we can glean from this breakthrough is an analogy for the way God calls us to seek him and find him together, in the community of those who follow his son.</p>

<p class="intro"> Tomorrow, Baylor University physicist Gerald Cleaver answers the question, "What <em>is </em>the Higgs boson?"</p><br> </br>

]]></content:encoded>
        <pubDate>Tue, 10 Jul 12 09:02:29 -0700</pubDate>
        <dc:creator>Faith Tucker</dc:creator>
        <!--<dc:date>Jul 10, 2012 09:02</dc:date>-->
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            <item>
        <title>Series: Understanding Evolution: the Evolutionary Origins of Irreducible Complexity</title>
        <link>http://biologos.org/blog/series/understanding&#45;evolution&#45;the&#45;evolutionary&#45;origins&#45;of&#45;irreducible&#45;complexity?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/understanding&#45;evolution&#45;the&#45;evolutionary&#45;origins&#45;of&#45;irreducible&#45;complexity?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>One of the challenges for discussing evolution within evangelical Christian circles is that there is widespread confusion about how evolution actually works. In this installment, we examine evidence that proteins in irreducibly complex (IC) systems can form and refine new interactions through gradual mechanisms.</description>
        <content:encoded><![CDATA[<h3>Something old and something new; something borrowed and spliced into</h3>

<p>In the last post in this series, we introduced a paper by Chen and colleagues that sought to identify new genes in various <em>Drosophila</em> (fruit fly) species. The youngest (i.e. the most recently evolved) gene they found is one specific to <em>Drosophila melanogaster</em>, the species of fruit fly beloved by geneticists as a model organism. The gene is named “p24-2” (not the most imaginative name, but it serves its purpose) and the gene it is duplicated from is called “Éclair”. The Éclair gene is found in a number of <em>Drosophila</em> species.  A simplified “family tree” of three <em>Drosophila</em> species  (<em>D. melanogaster, D. simulans and D. erecta</em>) is shown below. The duplication event that generated the p24-2 gene happened within the lineage leading to <em>D. melanogaster</em>, but after <em>D. melanogaster</em> and <em>D. simulans</em> separated as distinct species: </p>

<p align="center"><img src="http://biologos.org/uploads/static-content/Venema_UEIC2_1.png" alt="" height="342" width="500"  /></p>

<p>Since the entire genomes of these species are now sequenced and available online, it is possible to look at the chromosome region where the Éclair gene is found in all three. By looking at this region in <em>D. melanogaster</em>, we see that the brand-new p24-2 gene is almost right next door to its “parent” gene, Éclair. Below is a screen shot taken when looking at this region using a <em>Drosophila</em> “<a href="http://flybase.org/cgi-bin/gbrowse/dmel/?Search=1;name=FBgn0260463">genome browser</a>”  that is freely available online. The red arrow indicates the Éclair gene, and we can see p24-2 is just one gene over, and seems to be nested within another gene called “Unc-115b”. The green arrows are pointing to two different “versions” of how p24-2 is made into an mRNA working copy. The Unc-115b gene (blue arrow) has five different mRNA versions. (One of the p24-2 mRNA versions has a lot of Unc-115b sequence that is not used when the p24-2 protein is made).  </p>

<p align="center"><a href="http://biologos.org/uploads/static-content/Venema_UEIC2_2_large.png"><img src="http://biologos.org/uploads/static-content/Venema_UEIC2_2_small.png" alt="" height="285" width="570"  /></a><br />(Click Image to Enlarge)</p>

<p>Finding a duplicated gene next door to the sequence it is copied from is pretty common in genomes – when chromosomes are copied or recombined during cell division, side-by-side copies of parts of chromosomes show up every now and then. It’s also not surprising to see a new gene cobbled together with another gene. In this case, Unc-115b and p24-2 are overlapping but separate functional entities: they each have their own protein sequences, but each includes the code of the other as a sequence that does not actually translate into protein. The details of how this “cobbling” happens aren’t important for this discussion, other than to note that the mechanisms are known and not rare.  In the chart above, then, the orange sections indicate the active parts of the transcribed sequence, while the gray are sections that are included in the RNA molecule, but do not get used directly to code for the new protein. </p>

<p>When we look at this same chromosome region in <em>D. simulans</em> and <em>D. erecta</em>, however, p24-2 is missing. Éclair and Unc-115b are there, but p24-2 is not, since it arose after <em>D. melanogaster</em> separated from its common ancestors with the other species. (Note: this entire region is a mirror image in <em>D. simulans</em> and <em>D. erecta</em> when compared to <em>D. melanogaster</em> due to a large scale chromosome inversion that covers this whole area. So, while it looks “backwards” compared to the image above, that is not surprising, it’s expected):  </p>

<p align="center"><a href="http://biologos.org/uploads/static-content/Venema_UEIC2_3_large.png"><img src="http://biologos.org/uploads/static-content/Venema_UEIC2_3_small.png" alt="" height="255" width="570"  /></a><br />(Click Image to Enlarge)</p>

<p>So, with the p24-2 gene in <em>D. melanogaster</em>, we have a bona-fide, recent gene duplication event. This gene is brand new, evolutionarily speaking (less than 3 million years old, given the calculated speciation times of <em>D. melanogaster</em> and <em>D. simulans</em>). Not only is it brand new, it is also essential for survival in <em>D. melanogaster</em>: if you remove it, the fly dies. Obviously, since every other <em>Drosophila</em> species lacks p24-2, this gene is not essential for survival for any other species. It’s new, and now it’s necessary.  </p>

<h3>Do new, essential genes refute the Intelligent Design (ID) argument from Irreducible Complexity (IC)?</h3>

<p>So far, nothing we have discussed explicitly threatens the ID argument from IC, though it does threaten the ID argument that new information cannot arise through evolution, a topic we have discussed in detail <a href="http://biologos.org/blog/series/origin-information-series">before</a>. Michael Behe, the main ID proponent of the argument from IC, has <a href="http://behe.uncommondescent.com/2011/01/even-more-from-jerry-coyne/">commented</a> on this research by Chen and colleagues (thanks to commenter “Bilbo” for pointing this out). Behe’s rejoinder was to a blog post by biologist and atheist blogger Jerry Coyne, who used the paper by Chen and colleagues to attack Behe’s ideas. Since Behe’s reply deals with his understanding of how gene duplication relates to his argument from IC, I will quote it here at length:  </p>

<blockquote><p>I have never stated, nor do I think, that gene duplication and diversification cannot happen by Darwinian mechanisms, or that “they play almost no role at all” in the unfolding of life. (As a matter of fact, I discussed several examples of that in my 2007 book <em>The Edge of Evolution</em>. That would be silly — why would anyone with knowledge of basic biochemical mechanisms deny that, say, the two gamma-globin coding regions on human chromosome 11 resulted from the duplication of a single gamma-globin gene and then the alteration of a single codon? What I don’t think can happen is that duplication/ divergence by Darwinian mechanisms can build new, complex interactive molecular machines or pathways. Assuming (since he is in fact critiquing them) Professor Coyne has been attentive to my arguments, one background assumption that he may have left unexpressed is that he thinks the newer duplicated genes discovered by Professor Long’s excellent work represent such complex entities, or parts of them. </p>

<p>There is no reason to think so. A gene can duplicate and diversify without building a new machine or network, or even changing function much. The above example of the two gamma-globin genes shows that duplication does not necessarily result in change in function. The examples of delta- and epsilon-globin, which, like gamma-globin, presumably also resulted from the duplication of an ancestral beta-like globin gene, show that sequence can diversify further, but function remain very similar. Even myoglobin, which shares rather little sequence homology with the other globins, has not diverged much in biochemical function. </p>

<p>In his recent work Professor Long discovered that many of the new genes were essential for the viability of the organism — without the gene product, the fruitflies would die before maturity. Perhaps Professor Coyne thinks that that means the genes necessarily are parts of complex systems, or at least do something fundamentally new. Again, however, there is no reason to think so. The notion of “essential” genes is at best ambiguous. We know of examples of proteins that surely appear necessary, but whose genes are dispensable. The classic example is myoglobin. It is also easy to conceive of a simple route to an “essential” duplicate gene that does little new. Suppose, for example, that some gene was duplicated. Although the duplication caused the organism to express more of the protein than was optimum, subsequent mutations in the promoter or protein sequence of one or both of the copies decreased the total activity of the protein to pre-duplication levels. Now, however, if one of the copies is deleted, there is not enough residual protein activity for the organism to survive. The new copy is now “essential”, although it does nothing that the original did not do. </p></blockquote>


<p>The main points of Behe’s reply can be summarized as follows:  </p>

<ol><li>Gene duplications and subsequent changes to the copies (diversification) can and do happen, but the results are nothing really “new”— no new molecular machines or pathways (nor parts of such pathways), nor much in the way of new functions. </li>

<li>Duplicated genes can become essential simply by “sharing” the original function, and then reducing their share to a minimum, perhaps through the amount of protein that each copy makes. Again, this is not anything really new, since the copy doesn’t do anything that the original didn’t do already. So, the finding that some gene copies are essential genes is not a threat to the IC argument.  </li> </ol>

<p>Note that Behe’s reply makes predictions that can be tested with further research. These predictions might be summarized in this way:  </p>

<ol><li><em>If IC is correct, duplicated genes will not be part of new, complex molecular pathways or machines.</em></li> 

<li><em>If IC is correct, duplicated genes that are both essential should “share” the original function.</em></li></ol> 


<h3>Testing IC with new research</h3>

<p>Behe’s reply to the Chen paper is of course hypothetical and speculative – as demonstrated by his own comment that “there is no reason to think” that the duplicated genes are components of new complex pathways or systems. Accordingly, the validity of Behe’s reply depends on its ability to hold up over time as more work is done. Of note, the functions of p24-2 and its parent gene Éclair have been studied intensively since 2010. These studies, as we shall see in the next post in this series, shed quite a bit of light on these questions. </p>

<h3>For further reading:</h3>
<p>Behe, M.J. <em>Darwin’s Black Box: the Biochemical Challenge to Evolution</em>. Free Press, New York, 1996. </p>
<p>Behe, M.J. <em>The Edge of Evolution: the Search for the Limits of Darwinism</em>. Free Press, New York, 2007. </p>
<p>Chen, S., Zhang, Y, and Long, M (2010). New genes in Drosophila quickly become essential. <em>Science</em> 330; 1682-1685. </p><br> </br>



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        <pubDate>Thu, 28 Jun 12 09:55:46 -0700</pubDate>
        <dc:creator>Dennis Venema</dc:creator>
        <!--<dc:date>Jun 28, 2012 09:55</dc:date>-->
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        <title>What is Scientism?</title>
        <link>http://biologos.org/blog/what&#45;is&#45;scientism?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/what&#45;is&#45;scientism?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Scientism is a rather strange word, but for reasons that we shall see, a useful one. Though this term has been coined rather recently, it is associated with many other “isms” with long and turbulent histories: materialism, naturalism, reductionism, empiricism, and positivism.</description>
        <content:encoded><![CDATA[<img src="http://biologos.org/uploads/static-content/SaintSimonResized.jpg" alt="" height="224" width="161" style="float:left; margin:0px 10px 0px 0px;"/><p>&nbsp;</p><p>&nbsp;</p>
<blockquote>A scientist, my dear friends, is a man who foresees; it is because science provides the means to predict that it is useful, and the scientists are superior to all other men. --Henri de Saint-Simon<sup>1</sup></blockquote>
<p>&nbsp;</p><p>&nbsp;</p><p>&nbsp;</p>

<p>Scientism is a rather strange word, but for reasons that we shall see, a useful one. Though this term has been coined rather recently, it is associated with many other “isms” with long and turbulent histories: materialism, naturalism, reductionism, empiricism, and positivism. Rather than tangle with each of these concepts separately, we’ll begin with a working definition of scientism and proceed from there.</p>

<p>Historian Richard G. Olson defines scientism as “efforts to extend scientific ideas, methods, practices, and attitudes to matters of human social and political concern.” <sup>2</sup>  But this formulation is so broad as to render it virtually useless. Philosopher Tom Sorell offers a more precise definition: “Scientism is a matter of putting too high a value on natural science in comparison with other branches of learning or culture.” <sup>3</sup>  MIT physicist Ian Hutchinson offers a closely related version, but more extreme: “Science, modeled on the natural sciences, is the only source of real knowledge.” <sup>4</sup>  The latter two definitions are far more precise and will better help us evaluate scientism’s merit.</p>

<h3>A History of Scientism</h3>

<p>The roots of scientism extend as far back as early 17th century Europe, an era that came to be known as the Scientific Revolution. Up to that point, most scholars had been highly deferential to intellectual tradition, largely a combination of Judeo-Christian scripture and ancient Greek philosophy. But a torrent of new learning during the late Renaissance began to challenge the authority of the ancients, and long-established intellectual foundations began to crack. The Englishman Francis Bacon, the Frenchman Rene Descartes, and the Italian Galileo Galilei spearheaded an international movement proclaiming a new foundation for learning, one that involved careful scrutiny of nature instead of analysis of ancient texts.</p>

<img src="http://biologos.org/uploads/static-content/descartesresized.jpg" alt="" height="252" width="204" style="float:right; margin:0px 0px 0px 10px;" /><p>Descartes and Bacon used particularly strong rhetoric to carve out space for their new methods. They claimed that by learning how the physical world worked, we could become “masters and possessors of nature.” <sup>5</sup> In doing so, humans could overcome hunger through innovations in agriculture, eliminate disease through medical research, and dramatically improve overall quality of life through technology and industry. Ultimately, science would save humans from unnecessary suffering and their self-destructive tendencies. And it promised to achieve these goals in this world, not the afterlife. It was a bold, prophetic vision.</p>

<p>As this new method found great success, the specter of scientism began to emerge. Both Bacon and Descartes elevated the use of reason and logic by denigrating other human faculties such as creativity, memory, and imagination. Bacon’s classification of learning demoted poetry and history to second-class status.<sup>6</sup> Descartes’ rendering of the entire universe as a giant machine left little room for the arts or other forms of human expression. In one sense, the rhetoric of these visionaries opened great new vistas for intellectual inquiry. But on the other hand, it proposed a vastly narrower range of which human activities were considered worthwhile.</p>

<h4>The Enlightenment</h4>

<p>A century later, many of the Enlightenment intellectuals continued their love-affair with the power of natural science. They claimed that not only could science enhance the quality of human life, it could even promote moral improvement. The Encyclopedist Denis Diderot aimed to collect, organize, and preserve all human knowledge so that “our children, becoming better instructed, may become at the same time more virtuous and happy.” <sup>7</sup> Many of the French philosophes even claimed that science could be a substitute for religion. In fact, during the French Revolution, numerous Catholic churches were converted into “Temples of Reason” and held quasi-religious services for the worship of science.<sup>8</sup></p>

<h4>Positivism</h4>

<p>The 19th century witnessed the most powerful and enduring formulation of scientism, a system called positivism. Its founder was August Comte, who built his positive philosophy from a deep commitment to David Hume’s empiricism and skepticism. Comte claimed that the only valid data is acquired through the senses. Nothing was transcendent, and nothing metaphysical could have any claim to validity.<sup>9</sup> The task of scientists was twofold—first, to demonstrate how all phenomena, including human behavior, are subject to invariable natural laws.<sup>10</sup> Second, they would reduce these natural laws to the smallest possible number, and ultimately unify them under the laws of physics.<sup>11</sup></p>

<p>Comte also subsumed all of human intellectual history into a single process which he called the Law of Three Stages. In his view, each branch of knowledge passes through three stages: the theological or fictitious, the metaphysical or abstract, and lastly the scientific or positive state. He believed that through the continual advancement of human understanding, religion would fade away, philosophy and the humanities would be transformed into a naturalistic basis, and all human knowledge would eventually become a product of science. Any ideas outside that realm would be pure fantasy or superstition.</p>

<h4>Logical Positivism</h4>

<img src="http://biologos.org/uploads/static-content/ruler2.jpg" alt="" height="188" width="250" style="float:left;margin:0px 10px 0px 0px;" /><p>Positivism did not lose its appeal in the 20th century. To the contrary, a group known collectively as The Vienna Circle reinvigorated the fundamental tenets of positivism with enhanced symbolic logic and semantic theory. They called their approach, fittingly, logical positivism. In this system, there are only two kinds of meaningful statements: analytic statements (including logic and mathematics), and empirical statements, subject to experimental verification. Anything outside of this framework is an empty concept.<sup>12</sup></p>

<p>Given its sweeping claims, logical positivism came under heavy scrutiny. Karl Popper pointed out that few statements in science can actually be completely verified. However, a single observation has the potential to invalidate a hypothesis, and even an entire theory. Therefore, he proposed that instead of experimental verification, the principle of falsifiability should demarcate what qualified as science, and by extension, what can qualify as knowledge.<sup>13</sup></p>

<p>Another weakness of the positivist position is its reliance on a complete distinction between theory and observation. Observations, essential to the empirical approach of science, were claimed by positivists to be brute facts which one could use to establish, evaluate, and compare the theories. However, W.O. Quine pointed out in his “Two Dogmas of Empiricism” that observations themselves are partly shaped by theory (“theory-laden”).<sup>14</sup> What counts as an observation, how to construct an experiment, and what data you think your instruments are collecting—all require an interpretive theoretical framework. This realization does not deal a death-blow to the practice of science (as some post-modernists like to claim), but it does undermine the positivist claim that science rests entirely on facts, and is thus an indisputable foundation for knowledge.</p>

<h3>Scientism of Today</h3>

<p>Scientism today is alive and well, as evidenced by the statements of our celebrity scientists:</p>

<img src="http://biologos.org/uploads/static-content/nasa_resized.jpg" alt="" height="263" width="264" style="float:right;margin:0px 0px 0px 10px;" />
<blockquote>The Cosmos is all that is or ever was or ever will be. –Carl Sagan, Cosmos<br /><br />

The more the universe seems comprehensible, the more it also seems pointless. –Stephen Weinburg, The First Three Minutes<br /><br />

We can be proud as a species because, having discovered that we are alone, we owe the gods very little. –E.O. Wilson, Consilience</blockquote>

<p>While these men are certainly entitled to their personal opinions and the freedom to express them, the fact that they make such bold claims in their popular science literature blurs the line between solid, evidence-based science, and rampant philosophical speculation. Whether one agrees with the sentiments of these scientists or not, the result of these public pronouncements has served to alienate a large segment of American society. And that is a serious problem, since scientific research relies heavily upon public support for its funding, and environmental policy is shaped by lawmakers who listen to their constituents. From a purely pragmatic standpoint, it would be wise to try a different approach.</p>

<p>Physicist Ian Hutchinson offers an insightful metaphor for the current controversies over science:</p>

<blockquote>The health of science is in fact jeopardized by scientism, not promoted by it. At the very least, scientism provokes a defensive, immunological, aggressive response from other intellectual communities, in return for its own arrogance and intellectual bullyism. It taints science itself by association.<sup>15</sup></blockquote>

<p>Noting that most Americans enthusiastically welcome scientific advancements, particularly those in health care, transportation, and communications, Hutchinson suggests that perhaps what the public is rejecting is not actually science itself, but a worldview that closely aligns itself with science—scientism.<sup>16</sup> By disentangling these two concepts, we have a much better chance for enlisting public support for scientific research than we would by trying to convince millions of people to embrace a materialistic, godless universe in which science is our only remaining hope.</p>

<h3>Distinguishing science from scientism</h3>

<p>So if science is distinct from scientism, what is it? Science is an activity that seeks to explore the natural world using well-established, clearly-delineated methods. Given the complexity of the universe, from the very big to very small, from inorganic to organic, there is a vast array of scientific disciplines, each with its own specific techniques. The number of different specializations is constantly increasing, leading to more questions and areas of exploration than ever before. Science expands our understanding, rather than limiting it.</p>

<img src="http://biologos.org/uploads/static-content/Gears_large.jpg" alt="" height="340" width="250" style="float:left;margin:0px 10px 0px 0px;" /><p>Scientism, on the other hand, is a speculative worldview about the ultimate reality of the universe and its meaning. Despite the fact that there are millions of species on our planet, scientism focuses an inordinate amount of its attention on human behavior and beliefs. Rather than working within carefully constructed boundaries and methodologies established by researchers, it broadly generalizes entire fields of academic expertise and dismisses many of them as inferior. With scientism, you will regularly hear explanations that rely on words like “merely”, “only”, “simply”, or “nothing more than”. Scientism restricts human inquiry.</p>

<p>It is one thing to celebrate science for its achievements and remarkable ability to explain a wide variety of phenomena in the natural world. But to claim there is nothing knowable outside the scope of science would be similar to a successful fisherman saying that whatever he can't catch in his nets does not exist.<sup>17</sup> Once you accept that science is the only source of human knowledge, you have adopted a philosophical position (scientism) that cannot be verified, or falsified, by science itself. It is, in a word, unscientific.</p>

 <h3>Notes</h3>

<p class="date">1. "<em>Un savant, mes amis, est un homme qui prévoit; c’est par la raison que la science donne le moyen de prédire qu’elle est utile, et que les savants sont supérieurs à tous les autres hommes.</em>"  Translated into English by Valence Ionescu in <em>The Political Thought of Saint-Simon</em>. Oxford University Press, 1976.  Page 76<br>

2. Olson, Richard G. <em>Science and Scientism in Nineteenth-Century Europe</em>. Urbana, University of Illinois Press, 2008.<br>

3. Sorell, Tom. <em>Scientism: Philosophy and the Infatuation with Science</em>. New York: Routledge, 1991.<br>

4. Hutchinson, Ian. <em>Monopolizing Knowledge: A Scientist Refutes Religion-Denying, Reason-Destroying Scientism</em>. Belmont, MA: Fias Publishing, 2011.<br>

5. Descartes, Rene. <em>Discourse on Method</em><br>

6. Sorell, p176<br>

7. Sorell, p35<br>

8. Ozouf, Mona. <em>Festivals and the French Revolution</em>. Harvard University Press, 1988.<br>

9. Zammito, John H. A Nice Derangement of Epistemes : Post-Positivism in the Study of Science from Quine to Latour. Chicago: University of Chicago Press, 2004.<br>

10. This view is a form of strict determinism, and current popularizers of continue to enthusiastically endorse it. Perhaps they are “determined” to do so?<br>

11. This view is a form of extreme reductionism, also widely endorsed by current popularizers of science.<br>

12. Zammito, p8<br>

13. Popper, Karl. <em>Logic of Scientific Discovery.</em> 1959<br>

14. For an extended discussion, read Zammito’s chapter “The Perils of Semantic Ascent: Quine and Post-positivism in the Philosophy of Science” in <em>A Nice Derangement of Epistemes</em>. University of Chicago Press, 2004.<br>

15. Hutchinson, p143<br>

16. Hutchinson, p109<br>

17. Giberson, Karl, and Mariano Artigas. <em>Oracles of Science: Celebrity Scientists Versus God and Religion</em>. Oxford: Oxford University Press, 2009.</p> ]]></content:encoded>
        <pubDate>Mon, 11 Jun 12 05:00:14 -0700</pubDate>
        <dc:creator>Thomas Burnett</dc:creator>
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        <title>Fine&#45;tuning and the “Fruitful Universe”</title>
        <link>http://biologos.org/blog/fine&#45;tuning&#45;and&#45;the&#45;fruitful&#45;universe?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/fine&#45;tuning&#45;and&#45;the&#45;fruitful&#45;universe?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>I ask the question, “Why is the universe so special?” Now scientists don’t like things to be special; we like things to be general, and our natural anticipation would have been that the universe is just a common specimen of what a universe might be like.</description>
        <content:encoded><![CDATA[<p align="center"><iframe src="http://player.vimeo.com/video/17950307" width="400" height="300" frameborder="0"></iframe></p>

<p>I ask the question, “Why is the universe so special?” Now scientists don’t like things to be special; we like things to be general, and our natural anticipation would have been that the universe is just a common or garden specimen of what a universe might be like.</p>
 
<p>But we’ve come to understand a lot about the history of the universe. We know that our universe started 13.7 billion years ago, and it started extremely simple, just an almost uniformly expanding ball of energy, about the simplest physical system you could possibly think about. But a world that started so simple has of course become rich and complex. With you and me, in fact, the most remarkable and complex consequences are its history, at least of which we are aware. The human brain is far and away the most complicated physical system we have ever encountered anywhere in our exploration of the universe.</p>

<p>That fact itself might suggest that something has been going on in cosmic history rather than just one thing after another. But we’ve also come to understand many of the processes by which this rich fruitfulness has come to birth. As we’ve come to understand these, we’ve come to see that though these processes are of course evolving processes, they took long periods of time – the universe was 10 billion years old before any form of life appeared in it, at least as far as we know anyway – and life of our complexity only appeared yesterday.</p>
 
<p>Nevertheless, the universe is pregnant with life, pregnant with the possibility of life, essentially from the beginning onwards. By which I mean the given laws of nature had to take a very specific, very finely tuned form, if the universe was to have so fruitful a history.</p>

<p>That’s a very remarkable discovery, and let me give you some examples of why we believe that. If you’re going to have a fruitful universe, one of the first things you have to get right is that you have to have the right stars in the universe. The stars are going to have a very important role to play. First of all, you must have some stars that are going to be very long lived, live for billions of years, steadily burning, steadily producing energy which will enable the development of life on one of the encircling planets. We understand what makes stars burn in that sort of way very well, and it depends on a delicate balance between the strength of gravity and the strength of electromagnetism. Electromagnetism is the force that holds matter together. The seats on which you are sitting are held together by electromagnetism and in fact you are held together by electromagnetism.</p>

<p>If you alter that balance a little bit in one direction the stars will begin to burn intensely, furiously, just pouring out energy and they will only live a few million years rather than a few billion years. If you move it a little bit in the other direction they will burn so slowly they will be brown stars and they will not produce enough energy to fuel the development of life. So you have to have a very delicate finely tuned balance between the strength of gravity and the strength of electromagnetic forces in a fruitful universe.</p>

<p>Remember, science takes the laws of nature, takes the given strengths of gravity, the given strength of electromagnetism, uses that to explain processes in the world, how things happen, but it doesn’t explain where those laws of nature come from. They are just brute facts as far as science is concerned.</p>

<p>And the stars have another absolutely indispensible role to play. The stars are the place where the heavier elements essential for life are made in the interior nuclear furnaces. There are many elements that are necessary for life, of which carbon is perhaps the most essential. Carbon is the basis of the long chain molecules, which are the biochemical basis of life. The early universe only makes the simplest elements; it makes hydrogen and helium and it makes no carbon at all. Carbon only begins to be made when the universe, which started uniform, begins to condense and become lumpy and grainy with stars and galaxies. As the stars condense they heat up, nuclear processes begin again in their interiors. And it’s those nuclear processes in the stars that make carbon and the heavier elements. Every atom of carbon in your body was once inside a star. We are people of stardust made in the ashes of dead stars.</p>

<p>And that’s a very beautiful process that takes place in that sort of way. And one of the great triumphs of astrophysics and the second half of the 20th century was to unravel that process. One of the people who did some of the most important work on that was a senior colleague of mine in Cambridge called Fred Hoyle. And they were trying to figure out how to make carbon. They got helium, and if you can make three helium nuclei stick together that will produce carbon, but when you have something as small as a nucleus it is impossible to get three to stick together at one time, they’re just too small.</p>

<p>Ok, so let’s do it step by step. Stick two together gives you berylium. Helium 4 gives you beryllium-8, hope it stays around for a bit, another helium comes along, attaches itself, and bingo, you’ve got carbon-12. That’s the obvious thing to think about but it doesn’t work in the obvious way, and the reason it doesn’t work in the obvious way is that beryllium-8 is terribly unstable. It doesn’t oblige you by staying around long enough to catch that third helium, at least in an ordinary, straightforward way.</p>

<p>But Fred realized that it would be just possible for this to happen if there was a very large enhancement effect, in the trade we call it resonance, occurring in carbon at just the right energy, it has to be the right energy, which would enable that attachment process to catch that third helium much much more quickly that you might have thought, in fact so quickly that some of them would get caught before the beryllium-8 disappeared. It was a very good idea, and he must have felt pretty pleased with himself and he went off to just check in the nuclear data tables of this particular resonance’s energy levels, and it wasn’t in the tables, but he knew it must be there, he’s carbon based life like you and me.</p>

<p>So he rang up some friends in the States, a father and son team who were good experimentalists and he said, “Look, you missed something. There’s a resonance and energy level in carbon that you haven’t spotted, and I’ll tell you exactly where to look for it. I know exactly where this energy has got to be. You go look for it.” And they said, “No, no, we don’t want to do that, we have more interesting things to do.” But Fred was very determined and he bullied them into looking for it and they found it.</p>

<p>Now that’s a wonderful achievement, to predict an energy level in carbon on the basis of how it might have been made in the stars is a fantastic scientific achievement. But it’s more than that. Fred had a lifetime conviction of atheism, realized of course that if the laws of physics had been just a little bit different that resonance wouldn’t have been there, and the possibility of carbon-based life is too significant for it just to be a happy accident in his view, so he says in a Yorkshire accent that is beyond my power to imitate, he said that the universe is a put-up job. Fred didn’t like the word God, and so he said some Intelligent, capital “I” Intelligence, must have monkied with the laws of nature to make carbon production possible. What that could possibly be I don’t know, but the more sensible thing to say is that creation is ordained, that the laws of nature would be such, as to enable the fruitfulness of carbon-based life.</p>

<p>We’ll come back to evaluating that possibility in a minute, but before we do, let me give you two other examples of how specific, how special, our universe has to be for us to be able to be here today to think about. We live in a universe that is immensely big, beyond our powers to imagine really. There are a hundred thousand million stars in our galaxy in the Milky Way, of which our sun is just a common or garden specimen, and there are about a hundred thousand million galaxies in the observable universe, of which our Milky Way is a pretty common or garden specimen. So we live in a world that is unimaginably vast, and sometimes we might feel upset by that and think, “What could be the significance of us who are simply inhabitants of a speck of cosmic dust, as you might say, in this vast, vast universe?”</p>

<p>Nevertheless, if all those stars were not there, we would not be here to be upset at the thought of them. Because there is a direct connection between how big a universe is and how long it lasts, and a universe that is significantly smaller than our universe would not have been able to last the 14 billion years, which is the necessary time to produce beings of our complexity. So that’s another condition of the world that has to be right for human beings, or something like human beings, to be a possibility.</p>

<p>One final example, which is the finest tuning of all: quantum theory suggests that there should be an energy attached to space itself. In quantum theory the vacuum, so called empty space, is not just a void. There are things called vacuum fluctuations which occur in a continual sort of seething mass of things coming into being and going out of being all the time. So while there is nothing there that doesn’t mean there is nothing happening. That may sound strange and paradoxical but believe me that’s what quantum theory implies. And of course these happenings, these fluctuations, generate a certain amount of energy, we call it “zero point energy”, and that energy is spread out over the whole of space. So we expect there to be energy associated with space.</p>

<p>And just recently the astronomers have discovered something called dark energy which is driving the expansion of the universe, which is just such an energy associated with space. Well that’s very good, you might say. However, when we estimate, just from thinking about quantum theory, how much energy there should be in space it turns out to be a fantastically large amount, and when we see the amount of energy there actually is per volume in space, it turns out to be very, very small in relation to that expected size. In fact, it turns out to be smaller by a factor of 10<sup>-120</sup>. That means by a factor of 1 over 1 followed by 120 zeros. You don’t have to be a great mathematician to see that’s a fantastically small number. So some fantastic cancellation has taken place to turn that big number into the tiny number that we actually observe, and if it hadn’t taken place we wouldn’t be here to observe it because significantly higher energy would simply have blown the whole show apart too fast for anything interesting to happen. That’s the finest tuning that we know in the universe: one part in 10<sup>120</sup>.</p>

<p>So we live in a world that is very remarkably finely tuned, and we have to consider that. And all scientists would agree about what I have been telling you; this is non-contentious. Where the contention comes in is what we might make of that, what is the further significance of it.</p>

<p class="intro">In the <a href="http://biologos.org/blog/john-polkinghorne-on-natural-theology-part-iv">conclusion</a> to Dr. Polkinghorne’s lecture, he looks at two explanations for the "fine-tuning" principle -- the multiverse theory and the existence of a divine intelligence -- and explains why natural theology alone is not sufficient to make the case for a God who interacts and cares for his creation. To make the case for theism, he argues, we need revelation, God's self-disclosure. This is manifest in various ways, including that which we experience personally, including ethics and aesthetics.</p>]]></content:encoded>
        <pubDate>Fri, 01 Jun 12 05:00:10 -0700</pubDate>
        <dc:creator>John Polkinghorne</dc:creator>
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