Like any theory, Darwin’s idea that evolution proceeds through natural selection was once merely a hypothesis. In this post, we’ll look at some of the early observations Darwin made on biogeography: the study of where species are distributed across the globe. These lines of evidence would later prod him to consider the possibility that species arise through a natural process of gradual change over time, rather than being independently created in each location where they are found.

The curious case of the missing mammals

As a widely-travelled naturalist on the HMS Beagle, Darwin studied a large number of different environments and documented the species he found in each. The Beagle, engaged as it was in an effort to map the coastline of South America, naturally paid call to numerous island groups along the way, including islands at a great distance from a continent (i.e.oceanic islands). One observation that Darwin made about oceanic islands is that none that he studied had terrestrial mammals on them. Later work, after his voyage, would confirm that this was a general rule. Oceanic islands lack terrestrial mammal species, except for small species that were introduced by humans. In contrast, flying mammals (i.e. bats) were found on oceanic islands, and often these species were endemic (i.e. found nowhere else in the world but the island in question).

Darwin found these observations difficult to square with his (then) working assumption that species were independently created in (and specifically created for) the locations in which they are found across the globe. He discusses these observations, and the questions they raised in his mind, in two chapters entitled “Geographical Distribution” in his Origin of Species. After discussing the similar case that amphibians (such as frogs, newts, and so on) are also not to be found on oceanic islands, he turns his attention to the missing mammals:

Mammals offer another and similar case. I have carefully searched the oldest voyages, but have not finished my search; as yet I have not found a single instance, free from doubt, of a terrestrial mammal (excluding domesticated animals kept by the natives) inhabiting an island situated above 300 miles from a continent or great continental island.... It cannot be said, on the ordinary view of creation, that there has not been time for the creation of mammals; many volcanic islands are sufficiently ancient, as shown by the stupendous degradation which they have suffered and by their tertiary strata: there has also been time for the production of endemic species belonging to other classes; and on continents it is thought that mammals appear and disappear at a quicker rate than other and lower animals. Though terrestrial mammals do not occur on oceanic islands, aërial mammals do occur on almost every island. New Zealand possesses two bats found nowhere else in the world: Norfolk Island, the Viti Archipelago, the Bonin Islands, the Caroline and Marianne Archipelagoes, and Mauritius, all possess their peculiar bats. Why, it may be asked, has the supposed creative force produced bats and no other mammals on remote islands? On my view this question can easily be answered; for no terrestrial mammal can be transported across a wide space of sea, but bats can fly across. Bats have been seen wandering by day far over the Atlantic Ocean; and two North American species either regularly or occasionally visit Bermuda, at the distance of 600 miles from the mainland. I hear from Mr. Tomes, who has specially studied this family, that many of the same species have enormous ranges, and are found on continents and on far distant islands. Hence we have only to suppose that such wandering species have been modified through natural selection in their new homes in relation to their new position, and we can understand the presence of endemic bats on islands, with the absence of all terrestrial mammals.

(As an aside, it’s important to note that Darwin, when he discusses the “supposed creative force” is not here arguing against the existence of God as creator in general, but rather against the “ordinary view of creation” common at the time: that God had episodically created species at specific geographical locations (what were called “centers of creation”) and that biogeographical patterns could be explained with limited dispersal from those centers. Darwin himself held to this common view at the start of his voyage on the Beagle, and that is the model he is attempting to refute in Origin, since it was a prevailing view among scientists at the time. Darwin and many of his scientific contemporaries also had no difficulty viewing natural processes as part of God’s regular action in the world, as is evident in Darwin’s correspondence with American botanist Asa Gray, among others.)

So, for Darwin, his biogeographical observations sat at ease with his (later) ideas of colonization and subsequent species change through natural selection, but made no sense to him if one held to an independent creation model. Many oceanic islands were very old, yet no mammals had been created there. Many oceanic islands had habitat suitable for mammals (or, indeed, for amphibians, as he notes) yet no such species had been created for that suitable habitat.

Island endemics and their continental “allied species”

Darwin noticed more than the absence of certain species groups on oceanic islands. He also noticed an interesting feature of the species that were present: an endemic species on an oceanic island would often have strong similarities with a species on the mainland closest to the island in question. Additionally, the pairing of oceanic endemic species with continental species often seemed to override expectations that species found in similar environments would be more similar to each other. These observations prompted him to reflect further on the possible means by which these “closely allied species” arose. As Darwin would write in his Origin this repeated pattern made a significant impression on him, and further caused him to doubt that endemic species had been individually created for each oceanic island. His visit to the Galapagos would prove instrumental on this point:

The most striking and important fact for us in regard to the inhabitants of islands, is their affinity to those of the nearest mainland, without being actually the same species. Numerous instances could be given of this fact. I will give only one, that of the Galapagos Archipelago, situated under the equator, between 500 and 600 miles from the shores of South America. Here almost every product of the land and water bears the unmistakeable stamp of the American continent. There are twenty-six land birds, and twenty-five of these are ranked by Mr. Gould as distinct species, supposed to have been created here; yet the close affinity of most of these birds to American species in every character, in their habits, gestures, and tones of voice, was manifest. So it is with the other animals, and with nearly all the plants, as shown by Dr. Hooker in his admirable memoir on the Flora of this archipelago. The naturalist, looking at the inhabitants of these volcanic islands in the Pacific, distant several hundred miles from the continent, yet feels that he is standing on American land. Why should this be so? why should the species which are supposed to have been created in the Galapagos Archipelago, and nowhere else, bear so plain a stamp of affinity to those created in America? There is nothing in the conditions of life, in the geological nature of the islands, in their height or climate, or in the proportions in which the several classes are associated together, which resembles closely the conditions of the South American coast: in fact there is a considerable dissimilarity in all these respects. On the other hand, there is a considerable degree of resemblance in the volcanic nature of the soil, in climate, height, and size of the islands, between the Galapagos and Cape de Verde Archipelagos: but what an entire and absolute difference in their inhabitants! The inhabitants of the Cape de Verde Islands are related to those of Africa, like those of the Galapagos to America. I believe this grand fact can receive no sort of explanation on the ordinary view of independent creation; whereas on the view here maintained, it is obvious that the Galapagos Islands would be likely to receive colonists, whether by occasional means of transport or by formerly continuous land, from America; and the Cape de Verde Islands from Africa; and that such colonists would be liable to modification;—the principle of inheritance still betraying their original birthplace.

Many analogous facts could be given: indeed it is an almost universal rule that the endemic productions of islands are related to those of the nearest continent, or of other near islands.

Rethinking independent creation

For Darwin, both of these observations (that oceanic islands lacked terrestrial mammals, and that endemic species on islands were most similar to a species on the closest mainland) had the same explanation: his hypothesis that endemic, oceanic species were the modified descendants of a colonizing species from the nearest continent. This also explained the lack of amphibians and terrestrial mammals (but allowed for bats) - simply based on the ability of these classes of life to disperse across large expanses of ocean. Those that could disperse and colonize oceanic islands would experience modification in the new environment, and species unable to colonize these islands would never appear. To Darwin’s thinking, this explanation was wholly more satisfactory than the assumption that God had independently created every endemic species in its place, and arbitrarily chosen that oceanic islands did not need terrestrial mammals and amphibians.

Despite Darwin’s musing on the biogeographical patterns he observed, and the strong suggestion these patterns made of species change over time, a mechanism for that change would take some time for him to imagine. In our next post, we’ll look at that mechanism: Darwin’s idea of natural selection, and the evidence he assembled in its support prior to publishing the Origin.

Grantees will benefit from in-person interaction through a series of summer workshops in 2013, 2014, and 2015. These meetings will not only foster a broader knowledge base, but will build a sustained network of scholars and church leaders, both young and seasoned, who are serious about addressing the concerns of the church about evolution. Also in 2015, in connection with the third summer workshop, BioLogos will host a large conference open to scientists, scholars, and church leaders from around the world.

ECF History

In January 2012, BioLogos was awarded a multi-million dollar grant from the John Templeton Foundation to fund the work of scholars and church leaders on evolution and Christian faith. In spring 2012 we worked hard to get the word out. You may have seen announcements on the BioLogos website, in our newsletters, on the Books & Culture, Leadership Journal, or First Things websites, on your professional society’s listserv, or perhaps on your friend’s blog.

The response was overwhelming: we received 225 letters of intent for a total request of $21 million—about seven times the amount we had to offer. We needed to invite the most promising applicants to submit a full proposal, but recognizing the projects with highest potential would require broad expertise. From the beginning, we envisioned that a panel of scientists, pastors, and scholars would oversee the application and review process as well as play key advisory roles throughout the project. A team of eight highly qualified individuals came on board in the early months of the project. They reviewed each proposal and together recommended that BioLogos invite 86 applicants to submit full applications.

The deadline for submissions was October 1, 2012. As in the previous round, the ECF panel evaluated each proposal. In addition, we asked 55 other experts to participate, so that each proposal received 3-4 scores. Criteria for the decision included significance of topic, project design, creativity and innovation, long-term impact potential, feasibility, and budget.

The panel then met together November 29-30, 2012, to make the final funding decisions. In the end, they recommended that BioLogos give 37 awards, ranging from $23,000 to $300,000. BioLogos staff notified applicants of their awards on December 14, 2013.

The Grantees

As part of our objective to create a network of scholars and leaders, we awarded grants to organizations across the U.S. and the world. Thirty of the 37 grantees are domestic; seven are international, hailing from Canada, France, Great Britain, Netherlands, and Spain.

Two-thirds of the accepted projects will be led by teams—some with three or more Project Leaders. We expect that the teamwork and time spent together at our summer workshops will be the start of a long-lasting network of people dedicated to helping the church think carefully about origins.

Applicants chose to apply under one of three program tracks: interdisciplinary scholarship (Track 1), intra-disciplinary scholarship (Track 2), and translational projects (Track 3). Track 1 projects focus on both the collaboration between individuals in different disciplines and the development of projects at the interface of different content areas. Track 2 projects focus on work done within a specific discipline. Track 3 focuses on projects that encourage Christians, especially those within more conservative traditions, to engage in meaningful and productive dialogue to reduce tensions between mainstream science and the Christian faith. The numbers of grantees in Tracks 1, 2, and 3 are 6, 8, and 23, respectively.

Many of the scholarly projects tackle questions about Adam and Eve, the Fall, human identity, and Original Sin—some of the most critical interpretive issues for evangelical theology.  Some examples: 

• Theologian Oliver Crisp of Fuller Seminary will take an analytic theology approach to ask to what extent a theological account of the origin of human sin depends upon the evolution of modern humans from one and only one ancestral pair—especially if that pair does not appear to correspond to what we would think of as modern human beings. 

• Pastor Michael Gulker and philosopher James Smith, leading a large team from The Colossian Forum, ask a related question: if humanity emerged from non-human primates—as genetic, biological, and archaeological evidence seems to suggest—then what are the implications for Christian theology’s traditional account of origins, including both the origin of humanity and the origin of sin? 

• Biologist Dennis Venema of Trinity Western University and New Testament scholar Scot McKnight of Northern Seminary will write a book on the evidence for evolution and population genetics, with informed theological reflection on how these issues interact with orthodox Christianity.

• Biologist David Wilcox of Eastern University will develop an updated model of human identity which reflects the complex recent scientific advances in genetics and paleoanthropology and yet is sensitive to theological concerns.  

These are just a few of the scholarly awards; check out the Grantees page for full descriptions of all Track 1 and Track 2 projects.

All projects have translational potential, but Track 3 projects are designed to meet the needs of a particular constituency within the evangelical church. These projects run the gamut from ethics to education to media production to ministry resources.  Some examples include:

• Theologian Lee Camp of Lipscomb University will produce “The Questions in Monkey Town,” an episode of Tokens, a live variety show that features musical performances, comedic sketches, brief interpretive monologues, and dialog with authors and scholars. The episode will be performed and filmed on the site of the famous Scopes Trial in Dayton, Tennessee.

• Chaplain Joshua Hayashi and Educator Diane Sweeney of the Punahou School in Hawaii will lead a team to produce multimedia curricula aimed at helping high school students connect with their biology curricula and, at the same time, deepen their Christian faith.

• Physics teacher and pastor Benoît Hébert of Science et Foi Chrétienne in France will lead an international, multi-denominational team of French speaking Evangelical scientists, pastors and church leaders to produce a large number of resources on evolutionary creation.

• Pastor Seung-Hwan Kim of Grace Truth Community Church, a Southern Baptist church in Cambridge, Massachusetts, will produce teaching and preaching materials about evolution for church leaders.

• President Gregory Wolfe and Director of Resource Development for IMAGE will gather artists and writers of faith whose work explores the dialogue between evolutionary science and faith practice, convening a conversation between them and scientists, theologians, and church leaders in private and public conferences.

Again, this is just a taste of the diversity of Track 3 projects. Read more about each project on the Grantees page. You can look forward to an incredible variety of resources coming out of the ECF program, many of which will be featured right here on the BioLogos Forum.

A common argument leveled against the theory of evolution is that scientists have not been able to produce the expected transitional fossils that show the change of one species into another. If evolution were true, wouldn’t there be instances of clear intermediary species, like, for example, a species that was half whale and half hippo to show the transition between those two? In this BioLogos podcast, Kelsey Luoma addresses this misconception about what a transitional fossil actually is. Rather than a mix between two related species, transitional fossils point back to the common ancestors that modern species share. The fact is that the number of transitional species is massive and it grows with each passing year. Given the rarity with which organisms are actually fossilized, the amazing thing is actually the completeness of the fossil record, not its incompleteness. The transitional species story strongly supports, and certainly does not disprove, evolutionary theory. ¹

1. To hear the full audio clips which have been referenced go to:

• Rational Response Debate with Kirk Cameron (from Way of the Masters)
• Behind the Scenes with Dr. Neil Shubin (from Cincinnati Museum Center)
• Mark Norell Publishes New Archaeopteryx Findings (from American Museum of Natural Sciences)
• Texas A&M Professor Discusses Findings of Autralopithecus Sediba and its Relationship to Humans (from Texas A&M University)
• Intro/outro music composed by Martin Minor (Minor2Go).

An audio only version of the podcast can be downloaded here.

Today, as I write, I am no longer in the desert of southern California, nor in the beech-maple forest of New Hampshire, but on a glacial drumlin in Waubesa Wetlands—a large marsh four miles south of Madison, Wisconsin. Here Ruth and I have our home, and here I study creatures whose watery habitats my neighbors and I have worked to save from eventual destruction. While my desert study site now is covered by a city where people live alone in the land—absent the desert creatures—my wetland study site remains occupied by all kinds of native plants and animals. Embracing it is the Town of Dunn, whose land stewardship plan helps people understand, serve, and maintain this and the other ecosystems. Our town stewardship plan encourages restoration of the landscape, protects agricultural lands, and strives to transmit an intergenerational heritage of secure and wholesome homes, livelihoods, and habitats for the animals, plants, and people that live here. We live largely in harmony and accord.

House-building on slabs poured onto desert sands first alerted me to the question of praxis, the third point on the napkin. But it was later, in my work as organizer of the Waubesa Wetlands Scientific and Agricultural Preserve, and as supervisor and later as chair of the Town of Dunn, that I came to realize that science and ethics do no earthly good unless put into practice. In serving my town, I came to apply what I had learned in the desert: praxis uninformed by science and ethics usually creates more problems than are solved.

“How do you put it all together?” those students in New Hampshire wanted to know. For me, it was building a framework for stewardship that simultaneously considered the questions “How does the world work?” “What is right?” and “What then must we do?” This science-ethics-praxis triad is a framework for living, for learning, for teaching, and most importantly for acting. It is a framework for stewardship.

In order to live and act rightly in the world, we need to know how the world works. We need to know how the systems that sustain us work, and how we interact with them. Without such knowledge we could drown in a flash flood, have our homes undercut by desert winds, cross the street in the path of an oncoming car, or get sick from consuming foods with toxic ingredients. As human beings develop more and more of the world, and as the reach of human actions extends regionally and globally, our knowledge must increase accordingly. This knowledge is not limited to what we acquire from a formal education; it also includes the knowledge we gain from family and friends, and from experience and experiment. In order to live and act rightly in the world, we need to know how the world works.

In order to live and act rightly in the world, we need to know what we ought to do. A century ago, this question was addressed in many colleges across America in a course for graduating seniors on moral philosophy. The purpose of this course was to convict students that they should apply their knowledge for the pursuit of good instead of pursuing self at others’ expense. At my university, this aspect of college education is expressed in a quotation from Abraham Lincoln carved in stone on a bench behind Lincoln’s statue at the top of Bascom Hill: “Let us have faith that right makes might, and in that faith, dare to do our duty.” The question “What is right?” is represented by the ethics corner of our triad. Moving directly from the Science corner to the praxis corner, or from the ethics corner to the praxis corner, proves problematic, even disastrous. Consider the result of going from knowledge of nuclear fission (science) directly to producing and dropping an atomic bomb (praxis), or moving from the belief that death is bad (ethics) to removing dead wood from forests (praxis); both are examples of these disastrous shortcuts.

But knowing the science and observing the ethics of this stewardship framework does absolutely no good if it is not put into practice—placed into service. By themselves, the very best science and the most substantial ethics are no substitutes for action. We need to act appropriately and deliberately in the light of scientific and ethical knowledge. Praxis by itself, without being grounded in science and ethics, results in mere activism—activism that is unlikely to do good and that may produce harm. All three corners of the triad are essential—but not by themselves. Taken together and working interactively, they provide a framework for stewardship.

But will these three operate in dynamic interaction? Will they interact in ways that preserve and achieve the integrity of human life and the environment? The answer depends on what we know and understand about ourselves and the world (science), what we believe we should do (ethics), and what we in fact do, and how we respond to our successes and failures (praxis). It depends on our will, our motivation, our determination, and our dedication to strive for a harmonious world of creatures before their Creator. What might make us strive for such a world?

Part 3 explores the challenge of translating ideals into concrete actions.

A careful study of this chapter is important because it gives us a beautiful picture of the proper relationships we should have with God, the natural world, and each other. Numerous posts could be written on each of these relationships, but in this post I’d like to focus on how Genesis 2 describes our relationship to the rest of creation. These relationships are given deeper significance when we recognize that the garden is being described as a temple-like “sacred space,” not just an ordinary garden. There are numerous clues in the passage that this is the case. John Walton writes that the Garden/temple parallels “are givens that are simply assumed by the author and audience” ¹ of Genesis, but we completely miss them if we take fail to read the text the way the ancient author and audience would have.

Temples and Gardens

In the Ancient Near East (ANE), all sacred space was conceived of as something like a temple; it was a place where humans would serve God and experience their closest access to Him. Thus in ANE cultures, a temple complex was seen as being the apex and a microcosm of creation and the earthly abode of the god(s). Descriptions of temples often pictured a river flowing from under the temple and flowing out through an adjacent garden, symbolizing the fertile extravagance of the divine provision. A temple garden would be no mere backyard vegetable patch, but rather an elaborate, beautifully landscaped botanical park.

The same temple/river picture can be seen in the description of the eschatological temple in Ezekiel (ch. 47) and Revelation (chs. 21-22, where the final temple is God Himself). Sound familiar? In Genesis 2 we also have a river flowing “from Eden [‘Abundance’] to water the garden” (v. 10).² Not only is the Garden filled with “every beautiful tree with edible fruit” (v. 9), but the area itself is rich with gold, resins, and gemstones (sometimes translated “bdellium and onyx”), the same materials later used to decorate Israel’s tabernacle, temple, and priestly garments. Furthermore, many scholars are convinced that the design of temple’s Menorah (candlestick) deliberately echoes the Garden’s Tree of Life, and some also think that the Ark of the Covenant in the temple parallels the Tree of the Knowledge of Good and Evil.³

Made for Sacred Service

As inhabitants of this temple-garden, it comes as no surprise that Adam and Eve enjoyed a special closeness to God’s presence (Gen. 3:8 pictures God taking an evening walk through the Garden). But as inhabitants of the Garden, they had special responsibilities as well; they were told “to farm it and take care of it” (v. 15). The two Hebrew words used here have a broader range of meaning than their English translations suggest. As John Walton writes, the broader meaning of the word here translated “to farm” (particularly when used in a sacred context) “is often connected to religious service deemed as worship (e.g., Ex. 3:12) or of priestly functionaries serving in the temple precinct (e.g., Num. 3:7-10).” ⁴

The usage in Genesis 2 seems to have two layers of meaning: “farm/cultivate the Garden” (since it is an agricultural space) and “serve/worship God” (since the Garden is also a sacred space). The dual meanings are as intertwined in Hebrew grammar as they are intended to be in practice. The second Hebrew word (translated “take care of”) has a deeper religious meaning as well. The word can refer to protecting farmland from external threats, but in a danger-free sacred space like the Garden, the word more generally refers to “performing duties on the [temple] grounds,” that is, to “sacred service.”⁵

Walton therefore translates these two Hebrew words as “serve and preserve.” These same words appear again together several times in Numbers to describe the priest’s duties in the temple. Because of all this, Gordon Wenham describes Adam as “perhaps…an archetypal Levite” with a “quasi-priestly” role in the garden.⁸ Eve was created as Adam’s companion and “helper” in his work, a word which nowhere in the OT refers to a subordinate assistant, but rather to one who is at least equal to the one being helped.⁹

Genesis 2 should banish from our minds any idea that creation care is somehow “secular” work for a Christian, or that it is not even our responsibility. This was the first task given to humanity, to serve and worship God by cultivating and protecting the natural world. The centrality of our responsibility in this regard is even clearer when we back up to the beginning of the chapter. We know there was a river “flow[ing] from Eden to water the garden” (v. 10), symbolizing that “all fertility emanates from the presence of God.” ¹⁰ Nonetheless there could be no cultivated plants in the garden because “there was still no human being to farm the fertile land” (v. 5). With no gardener and no rain, the ground was watered indiscriminately; a human was needed to irrigate the waters and support a garden.¹¹ Therefore, God “formed the human from the topsoil” (Hebrew wordplay equivalent to “human from the humus”) before planting the garden. God certainly could have watered it another way without needing us, but He chose not to, and the resulting collaborative picture here is a beautiful one. All provision flows from God, but He has chosen to give us an essential part in further channeling his provisions in the natural world. Far from countering God’s creative work by destroying nature, we are intended to work with Him to preserve and further it.

Of course, though created primarily to glorify God, the world was also made to provide us abundantly with the food and resources that we need to live (Gen. 2:16). Yet we don’t need to look far to see that we have often failed in our responsibility to properly care for creation. We live in a fallen world, and sin has fractured the intended harmony of our relationships with God, creation, and each other (as described in Genesis 3:14-24).

I recently heard a striking crystallization of this fallen perspective in Spencer Tracy’s narration in the opening scene of the sprawling 1962 western film “How the West Was Won.” As the camera flies over majestic Western fields and mountains, the narrator tells us that “This land has a name today, and is marked on maps. But the names and the maps all had to be won, won from nature and from primitive man.” This is the fallen perspective – advancing our human purpose on earth is done through defeating nature and other people (derogatively labeled “primitive,” as well) apart from God. This perspective perfectly illustrates the conflict-based relationships that sin brings about, already described for us back in the first chapters of the Bible.

Are we doomed, then, to live helplessly in this way? If this is just the way the world is and the way we are, shouldn’t we just accept that? Apart from Christ the answer would be “yes,” but the New Testament makes it clear that though we are still fallen, the saving work of Christ has brought about a profound change in us. As N.T. Wright makes clear in his book Surprised by Hope, Jesus taught (and the Resurrection vindicated) that the Kingdom of God “was and is breaking in to the present world, to earth.” ¹² Christ’s Resurrection was the first act of the future new creation. If we are truly “born again” into this new reality, this new way of living, we must strive (in the Spirit’s power) to live lives of wholeness and right relationships, putting our sinful nature to death (Colossians 3). In doing so, we would be wise to include Genesis 2 as we seek to follow God’s will and God’s Kingdom, “on earth as it is in heaven” (Matt. 6:10).

In part 2 of this series, David describes how Genesis 1, Genesis 2, and modern scientific accounts offer complementary and mutually enriching perspectives in our understanding of God's creation.

Notes

1. John H. Walton, Ancient Near Eastern Thought and the Old Testament: Introducing the Conceptual World of the Hebrew Bible (Grand Rapids, MI: Baker Academic, 2006), 125.
2. Biblical quotations are from the Common English Bible unless otherwise noted.
3. Both symbolized divine wisdom that humans had to receive from God obediently, with the proper “fear of God” that the Old Testament wisdom literature stresses as a prerequisite. Disobediently eating the Tree’s fruit would lead to death and disobeying God would lead to expulsion from the Garden. Similarly, disobediently touching the Ark brought death (Num. 4:15, 2 Sam. 6:1-7) and disobeying God’s instruction led to Israel’s exile from their Eden, the land of Canaan.
4. John H. Walton, Genesis (Grand Rapids, MI: Zondervan, 2001), 172.
5. Ibid., 173.
6. Ibid., 192.
7. See Numbers 3:7-8, 8:26, 18:5-6.
8. Gordon J. Wenham, “Sanctuary Symbolism in the Garden of Eden Story,” in “I Studied Inscriptions from Before the Flood”: Ancient Near Eastern, Literary and Linguistic Approaches to Genesis 1-11, ed. Richard S. Hess and David Toshio Tsumura (Winona Lake, IN: Eisenbrauns, 1994), 401.
9. Walton, Genesis, 176.
10. Ibid., 170.
11. This follows Walton’s illuminating exegesis of this passage in Genesis, 164-65.
12. N.T. Wright, Surprised by Hope: Rethinking Heaven, the Resurrection, and the Mission of the Church (New York: HarperOne, 2008), 201.

The first video, “10 Questions with Katherine Hayhoe”, introduces the scientist in a brief and lighthearted interview. Hayhoe is presented with 10 questions concerning her personal life and beliefs. When asked, she explains that one thing people should know about Christianity is that having a relationship with the God of the universe is one of the most incredible experiences that a person can have. As the video unfolds, the viewer quickly begins to realize that, despite her unique profession of two seemingly incompatible beliefs, Hayhoe is a remarkably sane and “normal” individual. Her role model, she explains, is her father-- the person who first introduced her to science and showed her that it could be “really cool”. On a more serious note, the scientist admits that being both a scientist and a Christian can be difficult. The most frustrating thing about her position, she says, is the amount of disinformation which is targeted at her very own Christian community.

In the second video, “Climate Change Evangelist”, Katharine Hayhoe delves into deeper discussion of the perceived conflict between climate change and Christian faith. She explains that admitting her identity as a Christian scientist can be uncomfortable. Since evangelicals are the targets of much disinformation concerning science in general -- and specifically the science surrounding climate change -- many people in the church have a misguided view of the subject and do not look kindly at her career choice. One woman encountered by Hayhoe at a church in Texas, for example, believed that global warming was a lie taught in schools to mislead her children. In an effort to realign misguided views like these, Katharine Hayhoe and her husband wrote a book addressing the deep-rooted emotions often associated with climate change. People fear that addressing the climate issue will bring forth changes in the economy and uproot their way of life. However, Hayhoe encourages her viewers to act out of love, as the Bible calls us to do, rather than out of fear. Acting out of love inspires us to consider the poor and disadvantaged people around the globe when we respond to the reality of a changing climate.

In the final segment of this three part video montage, Hayhoe addresses the question of what climate change means. Specifically, she is concerned about how global warming affects people on a personal level. While global warming generally brings to mind melting ice caps and polar bears, its implications are far more widespread, affecting the lives of everyone around the world- from cotton farmers in Texas to public health workers in Chicago. If nothing is done to change current emission levels, the number of days per year which exceed 100 degrees Fahrenheit, for example, will begin to increase dramatically, and if emissions are increased, many areas will even develop extreme conditions like those seen currently in Death Valley. Hayhoe’s goal is to demonstrate clearly that the only way to preserve the world for future generations is to significantly reduce dependence on inefficient means of getting energy and instead transition to cleaner renewable energy sources.

Editor's Note: These videos first appeared on the Nova program "The Secret Life of Scientists & Engineers".

With the complete genome sequence in hand, we knew the sequence and location of our genes, but what we didn’t know was how all those genes are regulated: how do the trillions of cells in our bodies know when to turn on or off all those genes? How do the hundreds of distinct cell types develop and function together, when they are all running on the same DNA “operating system?”

That’s where the ENCODE (short for Encyclopedia of DNA Elements) project comes in. Launched in September 2003, shortly after the announced completion of the Human Genome Project, the goal of the ENCODE project is “to build a comprehensive parts list of functional elements in the human genome, including elements that act at the protein and RNA levels, and regulatory elements that control cells and circumstances in which a gene is active.” In other words, the project seeks to understand how the genome “works.”

Early this month, researchers from ENCODE released more than thirty papers presenting their findings. During a Science magazine online chat, the project’s data coordinator, Ewan Birney, explained the outcome:

The ENCODE project aimed to start our understanding of how the human genome works. We know that (nearly) all the information that determines a human is in the genome, as we all start off as single cell with this DNA. However, we had a patchy understanding of how it works, in particular away from protein coding genes.

To work out how the genome works, we used the fact there are many tiny machines (proteins and RNA - RNA is very like DNA) in each of our cells which know how to "read" parts of the genome. By monitoring where these little molecular machines are on the genome, or how parts of the DNA are copied into RNA (there are quite a few different types of RNA as well), we start to gain some insight into the genome.

We did many such experiments, across different cell types (eg, one cell type was very similar to a liver cell type; another was very similar to a white blood cell). This way not only can we see what is similar, we can also see differences between these cell types.

There is a lot more to get to know and understand here - this is definitely closer to the start than the end. But it is a substantial amount of data, and analysis, to start on this journey.

According to the abstract of one of the lead papers from Nature, this extraordinary glut of data “enabled us to assign biochemical functions for 80% of the genome, in particular outside of the well-studied protein-coding regions.” Only 2% of the genome codes for proteins, but 80% or more has some biochemical function. As a Science news article put it, these 30 papers “sound the death knell for the idea that our DNA is mostly littered with useless bases.”

The pro-Intelligent Design organization The Discovery Institute has heralded the discovery as the “demise of junk DNA.” Casey Luskin writes for their blog Evolution News:

Let's simply observe that it provides a stunning vindication of the prediction of intelligent design that the genome will turn out to have mass functionality for so-called "junk" DNA. ENCODE researchers use words like "surprising" or "unprecedented." They talk about of how "human DNA is a lot more active than we expected." But under an intelligent design paradigm, none of this is surprising. In fact, it is exactly what ID predicted.

The extent to which the ENCODE project been able to identify function has been surprising—even exhilarating—though scientists have for some time been getting glimpses of the many ways in which segments of DNA can be “active.” Even in 1970 biologists knew that some non-coding DNA had function, and by 2003 there was a large body of work demonstrating that many non-coding elements acted as promoters, enhancers, insulators, and so on. Indeed, in recent years many have come to appreciate the fact that “junk” was never really an appropriate metaphor in the first place. Still, because sequencing of multiple genomes has shed such extraordinary light on key evolutionary mechanisms, many geneticists have focused on function primarily in terms of which regions do or do not contribute to the evolutionary fitness of their host, rather than whether they were merely "doing something" biochemically. What the impressive ENCODE project has done is open a treasure trove of new information that can only accelerate the pace at which researchers are able to explore the incredible subtlety and complexity of DNA, and refine the very concept of “functionality.”

So with all this in mind, is ENCODE a stunning victory for ID, as Luskin believes? Bryan College biologist Todd Wood thinks not. He writes, “I don't think that function equates to design, nor do I think that design requires or predicts function. They're not the same thing… my understanding of function does not require me to hypothesize God (or an anonymous designer, if you must) as the proximal cause.”

We agree. Indeed we would go on to say that evolution and design are not mutually exclusive. So while finding function is not sufficient to prove design, recognizing that function has arisen by way of evolution does not indicate that God was not at work. We at BioLogos believe God providentially works out his purposes—his designs—through the elegant processes of evolution, not in opposition to them.

Amazing as the new data are, it only strengthens and enhances our evidence for evolution. While much of the genome is “doing something” biochemically, it is still likely that the majority of the sequence is evolutionarily neutral (Senior Fellow Dennis Venema discusses the evidence for this “neutrality” in a post on our site, including a striking comparison between 29 different mammal genomes and the human genome). In fact, another ENCODE researcher participating in the Science magazine chat, John A. Stamatoyannopoulos of the University of Washington School of Medicine, thinks the findings align beautifully with evolutionary theory:

ENCODE's data provide a unique and powerful window through which to view evolutionary change. We can see those changes directly by lining up the genome sequences of many different organisms -- these line-ups have revealed millions of regions where all the genomes agree, indicating sequences that have been specially preserved by evolution while others have decayed away (ie freely changed their letter codes). We now see that a large proportion of these 'conserved' regions are lighted up by ENCODE annotations, indicating that they are marking spots in the genome that contain important instructions for cell function.

We’ve discussed “junk” DNA previously, including a multi-part series by Dennis Venema, and we’ve received many emails over the past few days asking for our comments on the ENCODE findings. On Monday and Tuesday, Dr. Venema will begin to offer his own thoughts on ENCODE.

A special thanks goes to Darrel Falk, Mark Sprinkle, Kathryn Applegate, Dennis Venema, and Tom Burnett for their contributions to this post.

The Denisovans, an extinct hominid group that interbred with modern humans, made the news again lately with the publication of a more detailed study of their genome. One of the many interesting findings was that the Denisovans share the same chromosome 2 fusion that modern humans have. In this post, I review what we know about the origins of human chromosome 2, and then discuss the new Denisovan findings and their implications.

The origins of human chromosome 2: a brief review

Though I have discussed the evidence for a fusion event leading to human chromosome 2 before, perhaps a brief review of the evidence is in order. The human genome is made up of 23 pairs of chromosomes (for a total of 46 chromosomes). This makes us something of an oddity among living great apes, all the rest of whom have 24 pairs of chromosomes (for a total of 48). Given that there are many independent lines of evidence that support the conclusion that we share a common ancestor with other great apes, this poses something of a conundrum: how is it that our species arrived at this specific chromosome number? If we were to represent this “problem” on a phylogeny, or tree of relatedness, it would look something like this (not to scale):

Our closest living relatives, chimpanzees and bonobos, both have 48 chromosomes, as do all other great apes such as gorillas and orangutans. This pattern has one of two explanations, one of which is much more likely than the other. Either the common ancestor to these species had 48 chromosomes, and there was an event that reduced that number to 46 specifically on the lineage leading to humans (option A), or the common ancestor species had 46 chromosomes, and there were independent, repeated events that increased chromosome number in all other great ape species (option B). We can compare these options by placing the required event(s) on the phylogeny (again, not to scale):

It should be obvious that the option that requires the fewest events is the more likely one – in this case option A with an event that reduces chromosome number in the lineage leading to humans. The other option, that of repeated, independent events to increase chromosome number, remains a formal, but unlikely, possibility. Events that reduce chromosome number are not frequent occurrences, so Option A is more likely than Option B.

We can also find further support for Option A, because it predicts a specific type of event, namely one that reduces chromosome number. Since loss of a large amount of chromosomal material is almost always detrimental, we need an event that reduces chromosome number without losing information. One way for this to happen is for two chromosomes to fuse together and become one. Initially, this event would produce an individual with 47 chromosomes, where two different chromosomes get stuck together. Contrary to what is often assumed, this individual would be fertile and able to interbreed with the others in his or her population (who continue to have 48 chromosomes). In a small population, over time, two relatives who both have one copy of the fusion chromosome may mate and produce some progeny with two copies of the fused chromosome, or the first individuals with 46 chromosomes. Since either a 48-pair set or a 46-pair set is preferable for ease of cell division, this population will either eventually get rid of the fusion variant (the most likely outcome), or by chance will switch over completely to the “new” form, with everyone bearing 46 chromosome pairs. While not overly likely, this type of event is not especially rare in mammals, and we have observed this sort of thing happening within recorded human history in other species. Some mammalian species even maintain distinct populations in the wild with differing chromosome numbers due to fusions, and these populations retain the ability to interbreed.

Further evidence for a fusion event in the lineage leading to modern humans comes from comparing synteny, or gene locations and orders on chromosomes within modern great apes – an issue we have discussed here before. In brief, what we see in human chromosome 2 is exactly what we would predict for a fusion event. When compared to other great apes, we see the genes on human chromosome 2 match up, in order, with two smaller ape chromosomes. We also see that sequences used at the tips of chromosomes are present at the proposed fusion site, and that human chromosome 2 has not one but two sites for the cell cytoskeleton to attach to for cell division – but that one of the sites is mutated and not functional, though it lines up precisely with the location of this site on the appropriate ape chromosome. Together, this evidence consistently supports both common ancestry for humans and great apes, and specifically that the difference we see in our chromosome numbers arose due to a single fusion event. I briefly discussed this evidence in my last post where I describe how I teach some of this material and the compelling impact it has on students exploring the evolution question for the first time.

Enter the Denisovans

With that as background, we are now prepared to appreciate a new finding that comes from genomics work done on the Denisovan hominids, an archaic species that is more closely related to Neanderthals than to us, but that nonetheless interbred with some anatomically modern humans as they migrated out of Africa and populated the globe. (For those not familiar with the Denisovans, or the evidence for our interbreeding with them, both Darrel Falk and I have written on this previously, here and here). Recently, a more detailed understanding of the Denisovan genome was published, and nested in the new information is the discovery that the Denisovans share the 46 chromosome set with the same fusion that we have. This strongly supports the hypothesis that the fusion event predates the separation of our species. If we were to represent this on a phylogeny, we can now place this event with more accuracy than before (as before, the phylogeny is not to scale):

Despite this new information, one obvious question remains. Did the Neanderthals also have the 46-pair set? From looking at the phylogeny above, we can see that the most likely answer is that they did, since the fact that the Denisovans had it strongly implies that the last common ancestor of humans and Neanderthals / Denisovans had it as well, and the Neanderthal-Denisovan split comes later. While the Denisovan DNA samples are of high enough quality to make this assessment, we do not yet have Neanderthal DNA of high enough quality to do the same analysis with current methods (though one additional feature of the new work on the Denisovan genome is developing more sensitive DNA sequencing techniques that may resolve this question in the future).

In other words, this fusion seems to be an ancient one, predating our species by several hundred thousand years. Present estimates of the last common ancestor between humans and Neanderthals / Denisovans range at about 800,000 years ago.

Implications for understanding our “becoming human”

The main implication from this work is that it places the fusion event well before the advent of our species. I’ve often chatted informally with Christians about evolution, and at times some have thought that this fusion event was what “started” our species, or made our species unable to interbreed with other groups. Some have even suggested that perhaps the fusion event was what produced the first human (i.e. Adam).

Note that thinking this way suggests a misunderstanding of how chromosome fusions occur and what effect they have on their hosts. A fusion does not precipitate a speciation event, but rather the individual with the fusion remains a part of his or her population, and able to interbreed, even if with reduced fertility. Also, there is no necessary biological effect or change that the fusion produces on the appearance of the organism. These misunderstandings aside, however,what this new evidence shows is that this fusion event took place long before modern humans arose at around 200,000 years ago. Indeed, the 800,000 years ago date for the last human - Denisovan common ancestor means that this is the most recent date possible for the fusion. While it is an interesting piece of our evolutionary history, it doesn’t seem to have much to do with how we came to acquire the traits that set us apart from, and ultimately outcompete, other similar species.

Darwin’s finches are some of the most visible and recognizable symbols of evolution in the world today. Biology textbooks feature them prominently, and the National Academy of Sciences has enshrined them in the entrance of their headquarters in Washington, DC. Surely the finches that Darwin collected on the Galápagos islands were a central feature of his evolutionary theory, right?

Lobby of The National Academies Building. Courtesy of CPNAS. Photo by Robert Lautman

Actually, the Galápagos finches are never even mentioned in Darwin’s famous work On the Origin of Species. Nor do they appear in Darwin’s famous notebooks on “Transmutation of Species”, in which he formulated the idea of evolution by natural selection.¹ Even Darwin’s private diary of his voyage on the HMS Beagle only mentions the Galápagos finches briefly in passing.²

It was only in 1845, in the second edition of The Voyage of the Beagle, that Darwin included a tantalizing sentence about the Galápagos finches:

Seeing this gradation and diversity of structure in one small, intimately related group of birds, one might really fancy that from an original paucity of birds in this archipelago, one species had been taken and modified for different ends.³

However insightful this statement may have been, Darwin never published anything else about the Galápagos finches for the rest of his life. Nor did he publically present these birds as direct evidence for this theory of evolution.⁴

If these finches were so important to Darwin’s evolutionary theory, why did he remain silent about them? One of his comments in The Voyage of the Beagle provides us with a clue:

Unfortunately most of the specimens of the finch tribe were mingled together; but I have strong reasons to suspect that some of the species of the subgroup Geospiza are confined to separate islands.⁵

When Darwin was exploring the Galápagos himself in 1835, he had not formulated his theory of evolution yet, and thus he did know what data would be necessary to make definitive conclusions about finch evolution. In particular, he did not keep careful track of which of his specimens came from which islands. Moreover, as was customary among naturalists at that time, Darwin only collected a small number specimens—he brought home only 31 finches and 64 total birds from the Galápagos.⁶

Though Darwin sensed that these birds were truly special, he lacked sufficient evidence to reach any specific conclusions about their evolutionary origins. It would be up to the rest of the scientific community to carry out the necessary empirical research. Subsequent expeditions in 1868, 1891, 1897, and 1905 brought back thousands of Galápagos finch specimens, but instead of unlocking the mysteries of evolutionary theory, the Galápagos finches became a great enigma.⁷

A century after Darwin's voyage, scientists still struggled to explain the staggering variety of finches on this tiny, remote archipelago. By the mid-1930’s, British Museum ornithologist Percy Lowe argued that the finches presented a "biological problem of first class importance", and he told the British Association for the Advancement of Science that the finches displayed a "bewildering diversity, intergradation, and distribution".⁸ Who would be up to the challenge of making sense of such tremendous biological complexity? It was David Lack.

David Lack

Ornithologist David Lack

David Lack had an exceptionally keen eye for bird-watching, and he possessed a passion to match it. By age 15, he had already observed 100 distinct species of birds, and before entering college, authored his first scientific paper. At Cambridge University in the early 1930’s, Lack was disappointed to find that his zoology professors taught “nothing about evolution, ecology, behavior or genetics, and of course nothing about birds.”⁹ In fact, at that time, there were only two professional ornithologists in all of Britain!

Thus David Lack took it upon himself to create his own learning opportunities. As an undergraduate, he became the president of the Cambridge Ornithological Club, traveled to Greenland for a bird-watching expedition, and cultivated a relationship with the prominent biologist Julian Huxley (grandson of Thomas Henry Huxley). Huxley was an inspiring mentor and encouraged Lack to expand his research further by studying tropical birds.¹⁰ Following this advice, Lack embarked on a research trip to Tanzania in the summer of 1934, but his greatest adventure was yet to come.

In 1937, Lack became fascinated by the scientific mysteries surrounding the Galápagos finches. But in order to study their behavior, Lack would need to travel to remote islands halfway around the world. How could he possibly get there? Once again, Julian Huxley was tremendously supportive and raised funds from two prominent scientific societies to pay for his expedition. After a long delay, David Lack and five companions finally set off on their journey.

Instead of residing in comfortable quarters aboard a royal naval ship, Lack’s group subsisted on a shoestring budget, traveled on commercial steamers, and stayed with local settlers. Their experience was definitely not a romantic tale of imperial expedition:

The Galápagos are interesting, but scarcely a residential paradise. The biological peculiarities are offset by an enervating climate, monotonous scenery, dense thorn scrub, cactus spines, loose sharp lava, food deficiencies, water shortage, black rats, fleas, jiggers, ants, mosquitoes, scorpions, Ecuadorian Indians of doubtful honesty, and dejected, disillusioned European settlers.¹¹

Whereas Charles Darwin spent only nineteen days on the shores of the Galápagos, Lack and his crew conducted more than five months of meticulous and exhausting study in the harsh climate. At that time, even the finches themselves provided little solace. Lack wrote,

Darwin’s finches are dull to look at, not only in their orderly ranks in museum trays, but also when they hop about the ground or perch in the trees of the Galápagos, making dull unmusical noises. Only the variety of their beaks and the number of their species excite attention.¹²

Large Cactus Finch on Española Island in the Galápagos Islands

The repetitive tedium requisite for important scientific discoveries is rarely discussed in public, and even today many bright-eyed science students become disillusioned by the painstaking work demanded by their Ph.D. programs. But one of the things that distinguishes great scientists is their unwavering commitment and tenacity in completing major projects. David Lack's efforts were not in vain:

"Despite his personal discomforts (or perhaps because of them), Lack did see something on the Galápagos that no one had ever seen before—natural selection at work among its finches through interspecies competition." ¹³

When the birds’ breeding season ended in 1939, Lack was ready to return to his home in England. But the captive finches that he had brought with him fared so badly on the voyage home that he detoured to San Francisco and put them in the care of the California Academy of Sciences. Turning this mishap into an opportunity, Lack stayed there for five additional months to study the Academy’s enormous collection of Galápagos finch specimens.¹⁴

To complete his systematic research, Lack then travelled across the United States to study the Galápagos finch collection housed at the American Museum in New York.¹⁵ Altogether, Lack examined more than 8000 specimens and specifically measured the length, width, and depth of all their beaks.¹⁶

Lack’s final obstacle was in getting his research published. Though he completed his academic manuscript “The Galápagos Finches—A Study in Variation” in 1940, paper shortages during World War II delayed its publication by the California Academy of Sciences until 1945. Were he only interested in making an original contribution to science, Lack could have stopped here and congratulated himself on a job well-done. However, his motivation sprung from a deeper source:

David Lack's drawing of 14 species of Galápagos finches, p. 19 of Darwin’s Finches

"I did not watch birds primarily for scientific reasons but for sheer enjoyment, and from the age of 15 onward returned day after day in a glow of excitement after seeing a new bird or a new habit." ¹⁷

Lack’s joyful fascination with the Galápagos finches inspired him to continue developing his conclusions long after returning from his expedition. While waiting for his academic paper to be published, he began writing a book that would enable students and the general public to share his excitement about these remarkable birds and the evolutionary processes that shaped them.

First published in 1947, Lack’s book became tremendously influential. Before this time, biology textbooks had never even mentioned the Galápagos finches. But after David Lack’s study, the finches became a primary example of evolution by natural selection, specifically adaptive radiation. Not only did textbooks fully rely on Lack’s findings, they also followed his lead in calling them “Darwin’s finches”, the title of Lack’s famous book.¹⁸

Iconic Finches

What was it about these birds that made them such a prominent symbol of evolution? As Darwin himself pointed out, the numerous Galápagos finch populations each have distinctive beaks, and he speculated that they could have evolved from an ancestral species that came to the islands. But a complete picture of finch evolution would have to wait another hundred years, when David Lack arrived.

During his five months on the Galápagos, including both the rainy and dry seasons, Lack observed that these beak differences enable the finches to subsist on different kinds of food:

The beak differences between most of the genera and subgenera of Darwin's finches are clearly correlated with differences in feeding methods. This is well borne out by the heavy, finch-like beak of the seed-eating Geospiza, the long beak of the flower-probing Cactornis, the somewhat parrot-like beak of the leaf, bud, and fruit-eating Platyspiza, the woodpecker-like beak of the woodboring Catcospiza, and the warbler-like beaks of the insect-eating certhidea and Pinaroloxias.¹⁹

Lack's image of beak adaptations from Darwin’s Finches

Specializing in such different sources of food enables these finches to live in close proximity without directly competing with each other or driving populations to extinction. The fact that so many of these closely related finches are able to co-exist is a remarkable fact in itself. As Lack himself put it, “It is not only the origin, but also the persistence, of new species which require explanation.”²⁰

But it is also fascinating to consider how these birds got to be so different in the first place. How did a finch come to have a beak like a “parrot”, “woodpecker”, or “warbler”? The answer lies in the distinct characteristics of the Galápagos. Because the islands are so remote, no actual parrots, woodpeckers, or warblers ever settled on it. In the absence of these species, the Galápagos finches were able to adopt feeding habits and forms that they would never have taken on a large continent full of other birds competing for food. The isolation of these islands offered just the right conditions for us to see living examples of adaptive radiation.²¹

Conclusion

Considering the immense popularity of the Galápagos finches, it is quite surprising to learn that Charles Darwin himself had so little to say about them. In fact, it was actually David Lack, one century later, who conducted the critical research that immortalized the finches in biology textbooks and popular lore. By naming his landmark book Darwin’s Finches,²² Lack paid homage to the man whose voyage on the HMS Beagle helped transform the study of natural history. But at the same time, Lack also obscured the fact that evolutionary biology is an enterprise conducted by a large community of brilliant scholars, not just the product of one man’s efforts.

This tendency to immortalize “great men of science” has also led many people to refer to modern evolutionary theory as Darwinism, despite the fact that it has substantially changed and developed over the past 150 years. It is important to give credit where credit is due, and if that’s the case, we should seriously reconsider how we refer to the Galapagos finches. Evolutionary biologist Dolph Schluter, who studied the finches several decades after David Lack, had this to say:

I find Lack's intuition really stunning given how little information he had. He's my hero actually… They should be called Lack's finches.²³

In the second part of this series, we’ll explore the fact that David Lack, in addition to being a world-renowned evolutionary biologist, was also a devout Christian. His study of evolutionary theory did not cause him to lose his faith; in fact, he actually converted to Christianity after completing his Galápagos finch research.

For Discussion

Further Reading

• Grant, Peter R.; Grant, B. Rosemary. How and Why Species Multiply: The Radiation of Darwin's Finches, Princeton University Press, 2008.
• Sulloway, Frank J. (Spring 1982), "Darwin and His Finches: The Evolution of a Legend" (PDF), Journal of the History of Biology 15 (1): 1–53.
• Weiner, Jonathon. The Beak of the Finch: A Story of Evolution in Our Time. Vintage Books, 1995.

Notes

1. Sulloway, F. (1983). "Darwin and his finches: The evolution of a legend." Journal of the history of biology 15(1): 32. Darwin’s notebooks on transmutation mentioned Galapagos tortoises and mockingbirds, not finches.
2. Lack, David. Darwin’s Finches. Cambridge University Press, 1947: 9. Confirmed by Sulloway (1983), p5.
3. Darwin, Charles. Journal of researches into the natural history and geology of the countries visited during the voyage of H.M.S. Beagle round the world. London: John Murray. 2d ed. 1845: 379-80. This edition of the book also contained the drawings of four different finches that have become enshrined in biology textbooks and on the walls of the National Academy of Sciences in Washington, DC.
4. Sulloway, p35. Sulloway points out that the first published evolutionary account of the Galapagos finches was not until 1876, by Osbert Salvin: "On the Avifauna of the Galapagos Archipelago." Trans. Zool. Soc. London, 9:447-51.
5. Darwin (1845), p395.
6. Sulloway, p40.
7. Sulloway, p40.
8. Larson, E. J. Evolution's Workshop: God and Science on the Galapagos Islands. New York, Basic Books, 2001: 166-67.
9. Lack, David. (1973) “My life as an amateur ornithologist.” Ibis: 424.
10. Lack (1973), 425-27.
11. Lack (1947), p1.
12. Lack (1947), p11.
13. Larson, 167-68.
14. The California Academy of Sciences sponsored an expedition to the Galapagos in 1905-06 and collected nearly 9000 Galapagos finch specimens (Sulloway, p40).
15. In New York, Lack roomed with the curator of the finch collection—German émigré zoologist Ernst Mayr. By developing this relationship, Lack had close ties with two of the biggest figures in the neo-Darwinian synthesis, Julian Huxley and Ernst Mayr (Larson, 168).
16. Larson, p168.
17. Lack (1973), p424.
18. Larson, p198.
19. Lack (1947), p60.
20. Lack (1947), p158.
21. See Lack’s concluding chapter on “Adaptive Radiation”, pp146-159 of Darwin’s Finches (1947).
22. British ornithologist Percy Lowe originally proposed the name “Darwin’s finches” in 1935, but the name did not catch on until Lack used it in his book. See P.R. Lowe, (1936) "The Finches of the Galapagos in Relation to Darwin's Conception of Species." Ibis, 13th ser., 6:310-321. (Cited in Larson, p287)
23. Schluter, in an interview with Edward Larson, 16 March 2000.

Eugene Dubois

13 years before, in 1877, Dubois had arrived in Amsterdam to study medicine, but always harboring a desire to study the ancestry of modern humans. So, after four years at the University there, he accepted an invitation to go to the University of Utrecht to study comparative anatomy and devote himself to the latest thinking about the origins of the human species. It was during his time at Utrecht (from 1881 to 1887) that Dubois became enamored of Haeckel’s views on human origins, which differed from those of Darwin. While Darwin argued that humans had evolved in Africa, the region in which our closest living relatives—the chimpanzees and gorillas—still live, Haeckel believed that the origins of humanity lay in East Asia. This was so, he believed, because of his own observations of gibbons that walk bipedally when on the ground.

Haeckel also believed that there had once been a large landmass called Lemuria between the continents of Africa and Asia. In his view, Lemuria had since become submerged, leaving the modern islands of Madagascar and the East Indies as its only remains. The idea of submerged continents was not unusual for the late 19th-century, as people struggled to understand the character of biological diversity present in the world and why there were such striking similarities between animals that were geographically dispersed. The geographical distribution of marsupial fossils in South America and Australia is an example of this sort of problem, and one that was not solved until the second half of the 20th century when continental drift reconstructions suggested that ancient marsupials had used Antarctica as a conduit between the other two continents. Not only did such theories make sense of modern distributions, they were confirmed with later discoveries of marsupial fossils in Antarctica.

In any case, in 1888 Dubois joined the army and set out for the Dutch East Indies to pursue his ideas. For the next two years, he would comb Sumatra attempting to locate the hominin remains that Haeckel promised would be there. In hindsight, what Dubois was attempting was something that had never been done before: discovery of hominin material through the tools of archaeological excavation. Up to this point, all of the human fossils had been found on the surface, eroding out of the side of a bank, or as a result of farming. It had not occurred to anyone to go looking for human ancestors.

Now, with his supply of prison workers dwindling due to desertion and fever, he had almost run out of options and was on the verge of failure. Using almost all of his remaining resources, he decided to abandon his excavations on Sumatra and turn to the nearby island of Java. Emboldened by the fact that early modern human fossils had been discovered there (at Wadjak), he arrived and settled in at Trinil, on the banks of the Solo River, in 1890.

Figure 1: Dubois' Pithecanthropus erectus

The very next year, Dubois’ long-standing efforts were finally rewarded, first with the discovery of a skullcap (calvaria) of a hominin cranium, and then with an intact femur (Figure 1). Judging by what he knew of cranial anatomy, Dubois estimated that the skull would have been approximately 900 cubic centimeters (cc) in volume, placing it below even the lowest threshold of modern humans. Further, he noticed that it was not like modern humans in shape, being too long and low. He concluded that it showed “evidence of a form intermediate between man and the anthropoid apes” (Dubois, 1896). Dubois envisioned a sequence of forms in which the gibbon gave rise to a form of chimpanzee called Anthropopithecus sivalensis, which then gave rise to the form represented by the Trinil remains, after which Homo sapiens arose (Turner, 1895).

Dubois spent the next twenty years on the road with his find, trying to drum up support for its place in human prehistory. As with Raymond Dart’s discovery of the first australopithecine thirty-three years later, Dubois did not receive a warm reception. Most critics simply said that he had gotten it wrong and that the femur did not belong to the same individual as the obviously-primitive skull cap. Some of the criticism Dubois suffered could have been mitigated had he been more open to sharing the Trinil materials; but, instead, he allowed very little access to the bones, so that very few people knew exactly what they looked like. Adding to Dubois’s credibility problems was the 1911 “discovery” of Piltdown. This intentional hoax turned the paleoanthropology world on its head for forty years, sending researchers down innumerable rabbit holes. As I noted in a previous post, the Piltdown remains made all of the other hominin finds appear too “ape-like” to be on the road to humanity and informed many opinions about finds such as those from Trinil.

On the other hand, some critics of Dubois’ new hominin claim were vicious, and questioned both his academic abilities and his judgment (Shipman & Storm, 2002)—in addition to the interpretation of the find itself. It was in reference to Dubois’ work that the term “Missing Link” was first used with reference to a particular human fossil, originating with Charles Lyell (1863) and describing palaeontological gaps. And ironically, it was in one of the most stinging criticisms of Dubois’ work that the name that would eventually stick was first used: “Homo erectus.” Eventually, many other finds in the same general area and across Southeast Asia demonstrated that what Dubois had found was a real, previously-unknown hominin form, and the first to colonize the Asian continent and the islands leading off towards Oceania.

Homo erectus across South East Asia:

Figure 2: Sangiran 17

Sangiran

The earliest point at which Homo erectus appears to have begun to colonize the greater East Asian region is around 1.8 million years ago, represented first by the partial child’s skull found at the site of Modjokerto, and then, at around 1.66 million years ago, at the site of Sangiran, in Trinil, where Dubois had made his landmark discovery. This site was rich, yielding the remains of many crania, perhaps best represented by Sangiran 17 (Figure 2), an almost complete skull.

The material from the Sangiran site is very diverse morphologically, with some crania having capacities of as little as 700 to 800 cc, and other, larger heads with volumes in the range of 1000 cc. As with the late Homo ergaster finds from Africa, the remains from Sangiran yielded crania that were still widest at their bases, possessing large brow ridges. Some have thick cranial bones and are very robust (Sangiran 4), while others are very gracile (Sangiran 31). What this variation means is not clear, but most workers believe it represents a very diverse diachronic population (that is, one group living and moving around over a long period) rather than separate species inhabiting the area. The Sangiran site yielded fossil material in an almost continuous succession from approximately 1.66 million years ago to less than 800,000 years ago.

Because the area of the excavations—the Sangiran Dome—is a volcanic deposit, the layers have been securely dated by the ⁴⁰Ar/³⁹Ar method, although questions remain about the historical sequence and distribution of other animals that lived there through the ages (its faunal succession). The problem is that many of the fossils were not found in context, and relating them directly to the stratigraphy is tenuous. Despite this, most workers are comfortable with the earliest hominins in the region being at least 1.5 million years old.

One of the things hampering workers in this region is the comparative paucity of recovered stone tools. Those that have been found suggest a technological stage similar to the late Oldowan design, equivalent to that being created by the Homo ergaster populations inhabiting the area of Dmanisi and East Africa. Unfortunately, none of the tools have been associated with the hominins directly so it is not exactly clear who made them.

Figure 3: Sambungmacan 3

Sambungmacan

Another major find from the area where Dubois brought Homo erectus to light is the cranium from the site of Sambungmachan. This skull was reportedly found in 1977 but was then illegally sold to the antiquities market, where is spent considerable time in different collections before being “rediscovered” in 1998—in a New York nature curio shop called Maxilla and Mandible, Inc. (Delson et al., 2001). This was an almost-complete calvaria (Figure 3), with only part of the base missing. It is equivalent in size to the fossils from Sangiran, with a cranial capacity of around 1000 cc. It has a large brow ridge extending all of the way across the top of the eyes, a long, low cranium with a sloping forehead and a maximum width near the cranial base—all features that are also characteristic of the late African H. ergaster and Sangiran crania. Although we will never know exactly how old this cranium is, its morphology is consistent with that of the material from Sangiran.

Figure 4: Ngandong 6

Ngandong

Later in time, but also located on the Solo River, is the site of Ngandong, excavated by Oppenoorth in the early 1930s. At this site, fourteen calvaria have been discovered, all of which show advanced Homo erectus characteristics: long and low in shape, with thick-bones and a distinctive brow-ridge. (Figure 4). As with the other Indonesian finds, dating the Ngandong material has been problematic. The deposits at the site were originally thought to be around 100,000 years old, but this interpretation was turned on its head in 1996, when Swisher and colleagues claimed that the deposits were no older than between 27,000 and 53,000 years old (Swisher et al., 1996). These age estimations were made on the associated fauna, however, and as Rainer Grün and the late Alan Thorne pointed out, the faunal material does not match the skulls either in color or in texture and is likely not from the same time. Recently, Swisher and colleagues revisited the dating of the site and derived internally-consistent dates of at least 143,000 years before the present (Indriati et al., 2011). As with the Trinil remains, however, there are no associated stone tools.

Homo erectus in China

The Chinese Homo erectus material is very widely scattered and working in the region has presented many difficulties for researchers in terms of transport, language barriers and funding. Consequently, we know less about this region and its previous inhabitants than we do about most other areas of the Old World. Although there are between ten and fifteen sites that have yielded Homo erectus material, I will only touch on the most important ones.

Lantian:

Figure 5: Lantian

In the early 1960s, a cranium and mandible were found in the cave of Lantian, Shaanxi province, whose characteristics matched other remains from China designated as Homo erectus. Paleomagnetic dating has yielded a date no earlier than 1.15 million years ago for the skull, with the consensus being that it is around 800,000 years old. A date of approximately 650,000 years before the present was derived for the mandible. The cranium is heavily encrusted and suffered from postmortem deformation (Figure 5). When reconstituted, it was found to have a capacity of around 780 cc (low for Homo erectus) and the bones on the sides of the head are the thickest yet recorded. At this site some flake tools, mammal remains, and an ash deposit were all recovered, suggesting hunting and control of fire.

Figure 5: Hexian

Hexian

Another almost-complete calvaria was found at Longtandong cave in the province of Hé Xiàn, dated to between 400,000 and 500,000 years ago. This find exemplifies typical Homo erectus in many ways in that it is long and low, with heavy muscle markings toward the base and the rear of the skull (Figure 6). The cranial capacity is around 1000 cc, a third-again greater than that of the Lantian calvaria. Its cranial shape is very similar to those found in Southeast Asia, suggesting that it straddles the Southeast Asian and Chinese boundary.

While both Lantian and Hexian were significant finds, another site in China boasted the single largest collection of Homo erectus fossils ever found at one site, as well as presenting one of the greatest mysteries in paleoanthropology. Tomorrow, in the conclusion of our look at Homo erectus in Asia, we’ll peer into the Zhoukoudian caves and consider how this species fits into the lineage of man.

There are two opposite errors which need to be countered about the fossil record: 1) that it is so incomplete as to be of no value in interpreting patterns and trends in the history of life, and 2) that it is so good that we should expect a relatively complete record of the details of evolutionary transitions within all or most lineages.

What then is the quality of the fossil record? It can be confidently stated that only a very small fraction of the species that once lived on Earth have been preserved in the rock record and subsequently discovered and described by science.

There is an entire field of scientific research referred to as "taphonomy" -- literally, "the study of death." Taphonomic research includes investigating those processes active from the time of death of an organism until its final burial by sediment. These processes include decomposition, scavenging, mechanical destruction, transportation, and chemical dissolution and alteration. The ways in which the remains of organisms are subsequently mechanically and chemically altered after burial are also examined -- including the various processes of fossilization. Burial and "fossilization" of an organism's remains in no way guarantees its ultimate preservation as a fossil. Processes such as dissolution and recrystallization can remove all record of fossils from the rock. What we collect as fossils are thus the "lucky" organisms that have avoided the wide spectrum of destructive pre- and post-depositional processes arrayed against them.

Soft-bodied organisms, and organisms with non-mineralized skeletons have very little chance of preservation under most environmental conditions. Until the Cambrian nearly all organisms were soft-bodied, and even today the majority of species in marine communities are soft-bodied. The discovery of new soft-bodied fossil localities is always met with great enthusiasm. These localities typically turn up new species with unusual morphologies, and new higher taxa can be erected on the basis of a few specimens! Such localities are also erratically and widely spaced geographically and in geologic time.

Even those organisms with preservable hard parts are unlikely to be preserved under "normal" conditions. Studies of the fate of clam shells in shallow coastal waters reveal that shells are rapidly destroyed by scavenging, boring, chemical dissolution and breakage. Occasional burial during major storm events is one process that favors the incorporation of shells into the sedimentary record, and their ultimate preservation as fossils. Getting terrestrial vertebrate material into the fossil record is even more difficult. The terrestrial environment is a very destructive one: with decomposition and scavenging together with physical and chemical destruction by weathering.

The potential for fossil preservation varies dramatically from environment to environment. Preservation is enhanced under conditions that limit destructive physical and biological processes. Thus marine and fresh water environments with low oxygen levels, high salinities, or relatively high rates of sediment deposition favor preservation. Similarly, in some environments biochemical conditions can favor the early mineralization of skeletons and even soft tissues by a variety of compounds (eg. carbonate, silica, pyrite, and phosphate). The likelihood of preservation is thus highly variable. As a result, the fossil record is biased toward sampling the biota of certain types of environments, and against sampling the biota of others.

In addition to these preservational biases, the erosion, deformation and metamorphism of originally fossiliferous sedimentary rock have eliminated significant portions of the fossil record over geologic time. Furthermore, much of the fossil-bearing sedimentary record is hidden in the subsurface, or located in poorly accessible or little studied geographic areas. For these reasons, of those once-living species actually preserved in the fossil record, only a small portion have been discovered and described by science. However, there is also the promise of continued new and important discovery.

The forces arrayed against fossil preservation also guarantee that the earliest fossils known for a given animal group will always date to some time after that group first evolved. The fossil record always provides only minimum ages for the first appearance of organisms.

Because of the biases of the fossil record, the most abundant and geographically widespread species of hardpart-bearing organisms would tend to be best represented. Also, short-lived species that belonged to rapidly evolving lines of descent are less likely to be preserved than long-lived stable species. Because evolutionary change is probably most rapid within small isolated populations, a detailed species-by-species record of such evolutionary transitions is unlikely to be preserved. Furthermore, capturing such evolutionary events in the fossil record requires the fortuitous sampling of the particular geographic locality where the changes occurred.

Using the model of a branching tree of life, the expectation is for the preservation of isolated branches on an originally very bushy evolutionary tree. A few of these branches (lines of descent) would be fairly complete, while most are reconstructed with only very fragmentary evidence. As a result, the large-scale patterns of evolutionary history can generally be better discerned than the population-by-population or species-by-species transitions. Evolutionary trends over longer periods of time and across greater anatomical transitions can be followed by reconstructing the sequences in which anatomical features were acquired within an evolving branch of the tree of life.

Along the side of our patio in front of our family garden, I grow grapes. I was inspired to grow them from the tradition of my mother's homeland in Cyprus, where grapes, olives, figs and lemons adorn the patios of each house. I was challenged to grow them well by the words of Jesus in John 15: "I am the vine, you are the branches, I will prune you to produce much fruit." Pruning is the secret to successful grapes, but that's another story.

The point is that in tending that grape arbor and our family garden, and exploring the beautiful landscapes we are blessed with in Virginia, my wife Elizabeth and I, along with our three daughters, are in communion with the Creator and Sustainer of heaven and earth. That may sound like a lofty statement, but for me, nature, His created order, is where I find Him most personally. I have known and recognized this since I was a boy.

Though born in Richmond, I was raised in Portsmouth, Virginia, where my father and I would fish along the Elizabeth River and the Chesapeake Bay. With my friends, I hunted in the Great Dismal Swamp. My father grew up on my Grandpa's farm in Tennessee near Bristol and he took our family back there often. My grandfather was one of those vanishing breeds of men who had fidelity and love for the land. He was dependent on the land for his food and a few cash crops for income. He was intimately tied to the rhythms of the seasons and his work in the fields.

My grandfather and my aunts and uncles looked at this work as a partnership with the Lord. They taught me how to care for the land, as well as the names of plants that grew in the forests and along the streams that surrounded their farms. They also taught me skills that made me appreciate their way of life. Through these early experiences, I became fascinated with an essential question: What makes nature tick? I also developed an interest in the spiritual relationship between God and His creation. And so the journey began.

I took up the study of biology at Virginia Tech focusing on stream ecology, and then worked as a field biologist surveying rivers throughout the Southeast. Eventually, I returned to graduate school to study forest ecology in the Shenandoah National Park. My faith in the biblical account of creation was challenged by professors who taught evolution as the mode of creation of living things.

This challenge I brushed aside until I began teaching biology at a community college in Clifton Forge. The words in the textbooks and the words of Genesis took on new meaning. Did they contradict each other? Could all forms of life really evolve by chance? Weren't we created in His image? My students questioned me about this conflict and I started a search for the answers.

For several years I wrestled with these questions as an intellectual exercise. I began to make progress only when I started answering with my heart along with my head, aided by that other gift received from my parents, trust in the power of prayer. Looking back, this doubt and questioning, this need to have all the answers, made my faith real exactly as it taught me that I don't need to have all the answers: that is where faith comes in.

I do know with certainty that God created the heavens and the earth, and manages and sustains His creation even today. I cannot know with certainty how He did it with such precision and beauty. How God created is still a mystery that science, by its methods, tries to discover and cannot fully explain, and one that the Bible is mostly silent on.

To me, there should be no contradiction between science and the Bible. In the beginning, God was there and science cannot speak to that. It is by faith that I know that God created the world not by chance, but for his purposes and glory. The precision of natural order and its beauty have always focused me on the Creator, just as Paul states in Romans that all creation bears witness to God. The more I study nature and natural sciences, the more it drives me back to God who made all things.

In time, I was hired by The Nature Conservancy in Richmond as the ecologist and director of a new biological inventory for Virginia. Then another faith question came. Why did the Church not speak to the Christian practice of stewardship as it relates to creation? Why did many in my profession worship the creation and not the Creator?

I stumbled upon the work of Wendell Berry, who has since become one of my favorite authors. In a short essay he wrote in 1988 entitled God and Country, he said we must deal with the true meaning of Genesis 1:28 where God told Adam and Eve to "be fruitful and multiply and replenish the earth and subdue it." He was right. Berry noted that many people use the words "dominion" and "subdue" as "unconditional permission to use the world as they please." I came to realize, like many, that such an interpretation is contradicted by the rest of the Bible.

The ecological teaching of the Bible is clear. God made the world and it pleased Him. It is His and He loves it. He has never given up title to it. He wants us to take excellent care of it. In Genesis we see it in His instructions to Adam and Eve in the Garden; in Leviticus 20, we see it in the Sabbath year and the Jubilee—laws governing land use, land rest and God's ownership of the land; in Psalm 24 David affirms "the earth is the Lord's and everything in it"; Jesus, in Matthew 6, tells us not to worry, for if God cares for the birds and plants, he'll also care for you; and in Romans 8:19, Paul says the creation eagerly awaits freedom when right relationships will be restored.

Biblical ecology is really a moral understanding of what God expects of us in relation to the natural world, but also in relation to the other people with whom we share it. This kind of stewardship has only been recently talked about in the Church. It means careful management, not destruction and abuse. It is infinitely practical because a healthy planet is in our best interest (we depend on its fruitfulness, after all), but biblical stewardship is also an act of loving our neighbors as ourselves, of loving even our children and grandchildren, by leaving them a decent place to live.

Psalm 8 lays out a mystery that, with the rest of Scripture in mind, invites a response in action as well as praise: "When I consider the heavens, the work of your fingers, the moon and stars you have ordained, what is man that you are mindful of him?" After more than 20 years with The Nature Conservancy in Richmond, Elizabeth and I have made a home for our family and have a church home, as well—all places in which we can respond to that mystery by bearing fruit. And though my answering the call to use my talents and time in each of those realms branches in many directions, it is always rooted in my awe of God, who created and sustains the universe and seeks a relationship with us. It is a call I live out in my vocation of protecting and restoring the lands and waters in Virginia, and a call our family lives out in our garden, in our frequent excursions in the outdoors, our worship of the Lord in church and at home, and, yes, even in growing grapes.

It didn’t seem right to deposit such a gift unreflectively into our bank account, allowing it to be swallowed up anonymously into our daily expense fund. My wife Sarah and I talked about a symbolic way we might use the money to honor John’s mark of grace on both of our lives. We very quickly settled on our decision: an SLR camera with a fine telephoto lens.

Many people remember John Stott for his books and preaching, but fewer remember him for his love of creation, his ornithological passion, and his knack for bird photography. On the very first day of my job working as his study assistant, I found on my desk a brand new set of binoculars and a copy of “Birds of Europe,” by Lars Johnson (the definitive guide). No study assistant was to work for John unless we shared in his love for birds, or at least could ably feign it. I soon discovered how seriously he took this avocation. In London he would stop whatever meeting we might be rushing off to in order to catch a look at a passing Kestrel. At his writing cottage in Southwest Wales we would begin every Sunday morning at Pickleridge Pools to see the Loons and Cormorants. Wherever we traveled, whether Uganda, India or Hungary, we would always schedule an extra few days to visit the local bird life with the accompaniment of a local expert.

But I also discovered that his love for birds was an extension of his love for creation and for its Creator. Uncle John took seriously the Psalmist’s words, “Great are the works of the Lord, studied by all who delight in them” (Ps 111:2). Taking “the works of the Lord” to include both God’s work of creation and redemption, he would often say that nature study and Bible study must go hand in hand. He was ahead of his time in calling Christians to have a more robust doctrine of and appreciation for Creation, and he viewed having at least one pursuit in the realm of natural history as an outflow of Christian discipleship. Indeed, it is striking that in his very last book, The Radical Disciple, in which he reflects on “some neglected aspects of our calling,” he includes “Creation Care” among Christian responsibilities like Christlikeness and Dependence.¹ And as remarkable as his accomplishments were in authoring such influential books as Basic Christianity and The Cross of Christ, it was his much less well known book The Birds Our Teachers,² which includes over 150 of his own photographs, that he would most often pull out to show visiting guests.

Some criticized John for his theistic evolutionary position and even his appreciation for Darwin, who John viewed as a man genuinely conflicted with how his discoveries could be integrated with his personal Christian faith. But Stott saw no contradiction between his own commitment to the authority of Scripture and his openness to God’s use of evolution in His creative process. He was of course unequivocal in his assertion that “One cannot be a Christian and not believe in creation.”³ Yet believing that Genesis 1 speaks more to the “why” rather than the “how” of creation, John also affirmed, “Those Christians who believe in evolution…mean that the huge variety of animal and vegetable forms can best be accounted for not by the independent creation of each, but by a gradual process of ‘descent with modification’, whether or not Darwin’s ‘natural selection’ is the best explanation of its mechanisms.”⁴ If anything, for John the possibility of God’s implementation of the evolutionary process was a striking example of the way God does not simply create but is also actively involved in sustaining and ordering His world.

So on the date of John’s birthday, April 27, we used his gift and bought our new camera. Laying it out on the table, I realized I needed a spacious and protective carrying case to hold the various lenses and equipment. I climbed up into the attic and retrieved John’s old camera bag, which he passed on to me after he had his second embolism and could no longer see well enough to take photographs. As I opened it up and examined the various lenses and mounts inside, now too old to adapt to any of the modern equipment, I realized I was holding in my hands the tools of one man’s passion and an expression of his love for his triune creator God. Deeply moved, I picked up my own camera, a new tool for my own stewardship of created life, and headed outside.

Notes

1. John Stott, The Radical Disciple (IVP, 2010).
2. John Stott, The Birds Our Teachers: Biblical Lessons from a lifelong bird-watcher (Angus Hudson, 1999).
3. Ibid.
4. John Stott, People Our Teachers (Angus Hudson, 2002), 110.

In the previous post in this series, we explored how evolution can force science into making predictions that seem counter-intuitive. For cetacean (whale) evolution, we saw that the preliminary lines of evidence (the fact that whales are vertebrates, and mammals, for instance) pointed to the prediction that modern whales are descended from four-limbed, land-dwelling ancestors. As we then noted:

Instantly this prediction raises a host of uncomfortable questions: where did their hind limbs go? How did they acquire a blowhole on the top of their heads when other mammals have two nostrils on the front of their faces? How did they transition to giving birth in the water? What happened to the teeth of the baleen whales? What happened to the hair characteristic of mammals? and so on. In some ways, evolutionary thinking about whales creates more difficulties than it appears to solve.

And yet, these difficulties are the stuff of science. If indeed our “educated guess” of terrestrial, tetrapod ancestry for whales is correct, the evidence will show that these transitions, challenging though they may seem, did indeed occur on the road to becoming “truly cetacean”.

We have already discussed hind limb and hair loss in whales, citing evidence from embryonic development in modern whales that shows how hair and hind limbs develop early in their embryogenesis, but then are lost at later stages. We now turn to one of the remaining questions: tooth loss in the lineage leading to modern toothless whales (order Mysticeti). To obtain their food these whales pass seawater through a baleen, a large sieve-like structure that filters out plankton, small fish and other food items. Some recent genetics sleuthing has investigated a portion of this riddle, and adds further details to the story of how the baleen whales came to be.

Evolution: A Theory with Bite

If indeed modern whales are descended from ancestral, four-limbed, terrestrial ancestors, then those ancestors, like mammals in general, had teeth. Modern toothed whales (order Odontoceti) have retained those teeth to the present day, but baleen whales have adopted a new way of life as filter-feeders. Researchers were curious to see if traces of a “toothed past” could be found in the genomes of modern baleen whales, so they went hunting for remnants of genes devoted to making teeth. Such defective gene remnants would be examples of pseudogenes, and we have discussed pseudogenes previously in this series. While pseudogenes in and of themselves are powerful evidence for evolution, pseudogenes that are “out of place” are especially so. One such example we have seen before is the human vitellogenin pseudogene, the remains of a gene used for yolk production in egg-laying organisms found in the exact location in the genome that evolution would predict for it. As mammals that receive embryonic nourishment through a placenta, we have no need of egg-yolk genes. Similarly, baleen whales have no need for genes responsible for making teeth, and finding the remnants of such genes would make a strong case for an evolutionary origin of baleen whales as the modified descendents of toothed whale ancestors.

Independent Lines of Evidence, but Contradictory Stories?

Some of the genes known to be used in all mammals for tooth formation were the obvious candidate genes to start with: the products of the ameloblastin, amelogenin, and enamelin genes are all used in the formation of tooth enamel, the hardest structure in the vertebrate skeleton. Researchers went looking for these genes in several Mysticete (i.e. toothless whale) species. The results showed that all the species studied did indeed have these three genes present as pseudogenes (and more specifically, as unitary pseudogenes, a special class of pseudogene we have discussed in detail previously). Finding these genes as pseudogenes in toothless whales was exactly what evolution predicted, but there was a catch: none of the mutations that removed the functions of these three genes were shared between different species, suggesting that these genes lost their function independently in the species studied. This finding was at odds with data from the fossil record, which suggested that teeth were lost only once, and early in the lineage leading to all modern toothless whales. So, the researchers seemed to have two lines of evidence that at face value contradicted each other. The fossil record suggested that tooth loss occurred once in the common ancestor of all toothless whales, but these three genes seemed to have been inactivated independently, several times over, suggesting that loss of teeth should be happening later in Mysticete evolution, and more than once.

One proposed explanation for the apparent discrepancy (among several put forward) was to predict that a fourth gene required for enamel formation was lost early in Mysticete evolution. The loss of any one gene necessary for forming enamel would be enough to prevent the process altogether. In this case, the loss of this fourth gene would prevent tooth enamel from forming, even though the genetic sequences of the other three enamel genes would still be intact. Once enamel function was lost, random mutations in the remaining enamel genes could then accumulate later in Mysticete evolution after speciation in this group was already underway. To test this hypothesis, the research group went hunting for other enamel genes in toothless whales.

Signature in the SINE

The smoking gun for tooth loss in Mysticetes turned out to be exactly what was predicted: a fourth gene, necessary for enamel production, and mutated with the same inactivating mutation in all modern toothless whales. The gene in question, named enamelysin, was destroyed when a mobile genetic element called a SINE transposon inserted into it, breaking it into two halves and removing its function:

The fact that the same SINE insertion mutation at an identical location is found in all modern Mysticete species indicates that this mutation happened once in a common ancestor and then was inherited by the entire group. Since this must have occurred early in the evolution of toothless whales in order to happen in the common ancestor of the entire group, the picture from the genetics and the fossil record match. Once again, findings in one discipline (in this case, paleontology) can be used to make very detailed predictions about what another, unrelated discipline (comparative genomics) should reveal. These results are also entirely consistent with the observation, made in the 1920s, that toothless whales form tooth buds during embryogenesis that are later reabsorbed prior to the point when the deposition of enamel would begin. As with the hind limb story in whale evolution, lines of evidence from genetics, paleontology and embryology converge to support the hypothesis that modern toothless whales descend, through modification, from toothed ancestors.

In the next post in this series, we’ll examine a few more lines of evidence for whale evolution, and extend our discussion to converging lines of evidence for the evolution of our own species.

For further reading:

Meredith, R.W., Gatesy, J., Cjeng, J., and Springer, M.S. (2011). Pseudogenization of the tooth gene enamelysin (MMP20) in the common ancestor of extant baleen whales. Proceedings of the Royal Society B: 278 (1708); 993 – 1002. Available online: http://rspb.royalsocietypublishing.org/content/early/2010/09/16/rspb.2010.1280.full.pdf

Ridewood, W.G. (1923). Observations on the skull in foetal specimens of whales of the genera Megaptera and Balaenoptera. Philosophical Transactions of the Royal Society of London B: 211; 209 - 272. Available online: http://rstb.royalsocietypublishing.org/content/211/382-390/209.full.pdf

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Jennifer Wiseman’s 2009 white-paper explained how a renewed engagement with science can enrich the church’s life of worship. Part 1 of our series taken from that paper discussed stumbling blocks to such a renewal. Part 2 began to describe how the Creation itself reflects the nature of God by displaying his power, creativity, beauty, patience, and faithfulness, all tied up in his character of love. This series concludes by connecting the knowledge of the world we get through scientific investigation with humanity’s Biblical mandate to exercise stewardship of God’s Creation.

Science can inform us of what we need to do, as stewards of God’s Creation.

Humanity faces tremendous moral dilemmas today, and science has relevance to most of them. As followers of Christ, we understand that our lives are entrusted to us for a short time, and that we will give an account for the things we do. So as stewards of our lives, and as disciples entrusted to build God’s Kingdom on Earth, it is essential to have knowledge and wisdom to shape the impact of our lives. Are we polluting the environment by our lifestyles? Clear studies of the relationship of how we live and the environmental impact on others are vital for God’s people. What about service? A well-intended project to provide irrigation or livestock for one needy people group may well end up polluting and destroying an ecosystem downstream.

Scientific understanding can foster wisdom for the best choices of lifestyles and service. And informed Christians can lead the pack in helping “science to inform science” when it comes to difficult ethical dilemmas. For example, farming systems that intensively confine animals may offer a promise from agricultural science of more food production to feed more people. But informed Christians can rightly cry foul, because the sciences of animal behavior and medicine clearly show that such confinement is inhumane and thwarts even minimal natural social and physical needs of animals, and environmental science shows that pollutants from such “factory farms” are devastating. The Biblical mandate for compassion for both people and animals is violated. Thus by combining compassion and prayer with broad scientific understanding, wisdom and clearer discernment will equip the Church for effective discipleship and social leadership.

There may be strong differences of opinion, between equally committed believers, as to the right use of science and technology. Should we genetically modify plants and animals, to provide a more abundant food supply? Should we design sophisticated weapons that can unintentionally destroy innocent lives? Should we use medical technology to prolong life at all costs? Such challenging issues can be an exercise in teaching God’s people how to be informed, how to articulate a viewpoint, and how to weigh respectfully the opinions and concerns of others, without necessarily condemning alternative points of view. In this way the Church can also set an example to the nation and the world of how healthy, respectful dialogue can foster productive progress in addressing difficult public issues. But how important are these issues, if the return of Christ is eminent? This is a realm of theological understanding that can affect whether some churches consider stewardship of technology and environmental protection as an important mandate of God, or even relevant to the future, if in fact there may be no long-term future of the present Earth. This requires careful teaching on the balance between embracing Godly stewardship principles with the intent to bless the world now and for many, many generations to come, while at the same time becoming spiritually ready to join the Lord however soon that may take place.

There is yet another realm of Christian discipleship in science, and that is simply the joy of exploration for its own sake, or rather, as a means of discovering and sharing what God has done. Sharing the wonders of Creation, as scientific discovery reveals them, is a great service to others.

(Earthrise: our beautiful, fragile planet, as seen from lunar orbit. Credit: NASA/Johnson Space Center)

Since I am an astronomer studying distant star-forming regions, and I work for our nation’s space exploration agency, I am sometimes asked by citizens of the public why we should spend any time or money on studies of outer space while there is so much human suffering on Earth: shouldn’t we solve the world’s problems first, before we spend money and effort exploring the oceans or the forests or distant galaxies? I have seen good people get very angry over what can appear to be completely unethical priorities; for instance should we send a probe to study Saturn when we could instead feed hungry children here on Earth? These dilemmas will always be present, and they are not simple. But I believe that God has called us to do BOTH: that is, to serve the poor and the suffering, AND to explore and study his Cosmos. In fact, it is those moments of great discovery and exploration, such as the first moon landing, or the Voyager images of Jupiter’s moons, or the historic first images from the Arctic explorers, that lift the human spirit and give us pause to contemplate the larger context and meaning of our lives. I have found kindred spirits, excited to learn about space, in both the western academic world and amongst the youngsters in impoverished, developing nations. Curiosity and wonder bring us together. We get a Biblical glimpse of this in Genesis, when God asks Adam to name all the animals. The text gives the sense of God’s pleasure as Adam sees the wondrous variety of creatures, and descriptively names each one.

And how should Christians view science and scientists? Since science is a systematic search for truth, and Christians believe that all truth is God’s truth, then there should be true appreciation for these “messengers” who devote their lives to understanding the details of God’s creation and who share their discoveries of scientific truth. Of course as human beings, scientists are sinful and fallible like everyone else. But the portrayal of science and scientists in the church should be a positive one. In fact, historically a great many leading scientists have done their work as explicit service to God (e.g., Blaise Pascal and Johannes Kepler). It should be no different today. Our congregations should encourage young people to go into science, and to see this (and all noble careers) as service to God. Imagine the difference it could make to the whole world if Christians would lead the use of science in a path compelled by love, compassion, and service!

Vox Balaenae, or “Voice of the Whale,” was composed by American composer George Crumb (b. 1929) and was first performed by the New York Camerata in 1971. It was only four years before that, in 1967, that biologists Roger Payne and Scott McVay discovered that humpback whales “sing” and published recordings of the whales’ complex vocalizations, after which “whale song” quickly entered the popular consciousness and helped propel the “save the whales” environmental movement forward. (In 1970, Folk singer Judy Collins even put out a version of the traditional melody "Farewell To Tarwathie" over a background of recorded humpback whale songs.) For many, the fact that the massive creatures might share the human capacity and desire to engage in music as a social activity only made their wholesale destruction at our hands more egregious.

Though he was himself inspired by hearing those early whale song recordings, Crumb’s work does not utilize tapes of real whales or attempt merely to reproduce the effect in the context of an ordinary musical form. Instead, he asks three chamber musicians with modified and electrically amplified instruments (piano, flute and cello) to create sounds that evoke the entire natural history of the sea. The piano is played and strummed from inside the case and with a glass rod or plate on the strings, the cello part emphasizes a string’s abilities to produce high harmonic tones, and the flautist sings into her instrument as she plays. Many of these effects are intended to suggest natural sounds—as in the cello’s "seagull effect" (audible at 5:59 in the video linked blow), and the whale-like beginning cadenza by the flute—but not always in a direct way. In addition, all three players perform wearing half-masks, which, according to Crumb help “effac[e] the sense of human projection,” especially when they play under blue stage lighting as he envisioned. (Most of these features can be seen and heard in this April 2011 performance in Montreal by Philippe Prud'homme, piano; Stephane Tetreault, cello

; and Camille Lambert-Chan, flute, though it omits the blue stage lighting.)

In this multi-sensory impressionistic scene, the whales become representatives of a natural world that predates humanity, yet whose fate is inextricably bound up with the will of mankind. Indeed, the tension between the measured vastness of geologic time and the “Age of Man” is written into the score, as an opening prologue is followed by variations on the initial “Sea Theme” (beginning at 4:20), each named after geologic epochs: Archeozoic, Paleozoic, Mesozoic, and finally, the Cenozoic. It is in this last age—when mankind arrives on the scene—that the sometimes atonal and harsh combinations of sound reach a dissonant climax that the score indicates should be played as “dramatic, with a feeling of imminent destiny” (beginning at 11:26). Finally, the piece moves towards its conclusion with a haunting restatement and renewal of the Sea Theme (at just after 13:00), with the musicians gradually playing more and more quietly until ending with a pantomime, as if creating sounds beyond the limits of human hearing. Again, the sense of resolution in the music is named by Crumb in the score’s instructions to the players: “serene, pure, transfigured.”

So what do we make of this musical narrative and what Crumb seems to be saying about both whales (standing—or swimming—for the natural world) and humankind? Is it truly an anti-human statement, a “whales vs. people” image in response to environmental damage we were only really beginning to understand (via science) at the time the piece was written? There is certainly a skepticism here about human hubris, made explicit at the end of the prologue section by a “parody” of the opening phrase of Strauss’ Thus Spake Zarathustra (at 2:40). Contemporary listeners then and now will likely recognize that borrowed theme as the music from the film 2001: A Space Odyssey (1968), but before that it was a musical homage to Nietzsche’s view of ascendant Man. In this ironic re-use of Strauss’ work, Crumb seems to say that against the span of geologic time and a vast (musical) world previously unknown to human ears, our claims of knowledge and technological mastery seem laughable.

Yet there are several clues that that sort of reading misses the mark, or that it is, at best, incomplete—beginning with the experience of playing and hearing it in person. I first heard Vox Balaenae in about 2002 with my then 6-year-old son. It was played in a small hall (under blue lights) at our local art museum by the Quadrivium Players, a group that included my friend Mary Boodell on the flute. While the masks were surprising at first, they did, indeed, de-emphasize the personality of the players as individuals, while emphasizing the atmospheric, world-creating power of art-forms, especially music.

Rather than a symbolic effacement of the human presence in the world (in keeping with the anti-Nietzschian not above), the effect was to move away from the ritualized performative aspect of modern chamber music and bridge the divide between players and observers, creating a more participatory community. Because of the piece’s distinctive, impressionistic kind of narrativity, one isn’t so much as “carried away by” the music as submerged and suspended in the world created by it, and Boodell describes the effect (especially at the end of the piece) of feeling like the audience is holding it’s breath to hear the silences Crumb has written into the score.

But Boodell also recounts the story of being drawn into the conceptual frame of the piece in a very physical, way when she found herself alone in a swimming pool in the weeks leading up to a performance. Though hesitantly at first, she couldn’t help but wonder how the sounds she made in Vox Balaenae would sound underwater, and so went under in the pool to find out. While the image makes one smile and probably reminds most of us of similar, less technically-proficient underwater experiments of our own, it also suggests how the piece helps hearers make a connection in addition to that between player and listener—that between humanity and the rest of the natural world. If the unexpected flow and soundscape created by Crumb helps audience and players achieve the kind of connection music scholar Jeff Warren has elsewhere on this site discussed as “entrainment,” it is also an invitation to a similarly compassionate state with the rest of creation, based on the new-found knowledge that other creatures have complex, even musical relationships with each other, and that we are privileged to discover and begin to understand them.

Clearly, then, Crumb’s Vox Balaenae touches on scientific knowledge of the world both in its genesis in recordings of whale songs and its structure keyed to geologic, evolutionary ages. But does it have more to say to us here than that we should avoid killing whales because they sing? While we can recognize that the biblical call to have dominion over the earth guides us towards cultivation and care for its creatures and remember that Jesus exemplified such a shepherding role, we should also remember his priestly one, and ours. For just as he remains the High Priest of heaven, holding our prayers in the presence of the Father, we have similar joy in being between heaven and earth, “a little lower than the angels.” Thus we can hold up the great whales (and their songs) as monuments to the depth of God’s creative activity in and through nature—and even revel in our musical, creaturely fellowship with them—without denying the special place of humanity. On the contrary, we affirm that special place when we humble ourselves to listen, seek to understand the native tongues of creation, and then, through Christ, present its songs before the throne of the Almighty Creator and King.

In our previous post, we examined processed pseudogenes – transcribed gene copies that randomly insert into genomes. Unitary pseudogenes, however, are different: unlike processed pseudogenes, they are unique sequences in genomes, and not copies. They have the features one expects of “real” genes: regulatory sequences, introns, and protein coding sections – but with mutations that prevent them from being transcribed or translated. Like buildings in various states of repair, there is a similar range for unitary pseudogenes. If they have only been recently inactivated, they will be largely intact – like a recently abandoned building with a few broken windows. Others are further along in their degradation, like a stone building without a roof and grass growing up through the floor. Some are so far gone that one needs to peel back the turf to search for what remains of the foundation. Despite their various states of disrepair, they remain recognizable – in some cases, they can persist for millions of years before they slowly mutate beyond recognition.

The reason for these defective genes is straightforward: the organism that had the original mutation that removed the function of the gene was not significantly impacted by the loss. One example I have previously discussed is the human GLO pseudogene. The functional GLO gene is part of the biochemical pathway for making vitamin C, something that humans and other primates are not able to do: if we don’t get enough in our diet, we get scurvy. In an environment with adequate dietary vitamin C, however, the loss of the GLO gene is no big deal – and mutations that remove its function would not have been a disadvantage. The mutations that remove GLO function in humans are the same mutations we see in other species – they are an example of mutations in a nested hierarchy, the type of pattern that relatedness produces. This indicates that the mutations happened once, in a common ancestral species, and have been inherited by several species that descend from that ancestor, ours included.

So, what’s a defective gene like you doing in a species like this?

While it makes sense that mammals ought to be able to make vitamin C (even if humans and other primates cannot), in some cases pseudogenes seem much more “out of place.” One example from the human genome that we have discussed in the past, is the vitellogenin gene, a gene required for egg yolk formation in egg-laying organisms. This gene is present in the human genome as a pseudogene, even though humans are placental mammals – human embryos are nourished through a placenta, not egg yolk. This pseudogene was located in the human genome by predicting that its genomic location relative to its neighboring genes would be retained for a long time, even after its inactivation. Accordingly, researchers found a functional vitellogenin gene in the chicken genome, and noted the genes on either side of it (let’s just call them “Gene A and Gene B” for convenience). Gene A and Gene B are also side by side in the human genome, so the researchers looked between them for the signs of vitellogenin gene remains – and found them in that precise spot, still visible despite approximately 300 million years since we last shared a common ancestor with chickens:

Other examples like this abound: whales, for example, have unitary pseudogene remnants of genes devoted to an air-based sense of smell, even in cases where the whale species in question does not have an olfactory organ. A second example from whales are pseudogene remnants of visual pigments adapted for wavelengths of light found in terrestrial settings, not aquatic environments. These examples make perfect sense in light of the terrestrial ancestry of whales, but are challenging to account for from an antievolutionary perspective.

Pseudogenes: evolution’s silver bullet?

Unitary pseudogenes with shared mutations in nested hierarchies among related species are far from the only evidence for evolution, and are not even necessarily the line of evidence most convincing to specialists. Specialists can see the broad pattern of multiple lines of converging evidence that support common ancestry to an extent non-specialists cannot easily appreciate. Unitary pseudogenes, however, are valuable tools for demonstrating a sampling of those lines of evidence, and providing a window into the world of comparative genomics that, to paraphrase Dobzhansky’s famous quote, would make absolutely no sense except in the light of evolution.

Yes, the implications of unitary pseudogenes such as these are easy for even non-specialists to grasp: whales have the defective remnants of genes adapted to terrestrial vision and air-based smelling because they descend from terrestrial ancestors. Placental mammals, including humans, have a defective remnant of a gene used to make egg yolk because they descend from egg-laying ancestors. Unitary pseudogenes share identical mutations across related species because they were inactivated in a common ancestor, and were inherited by every species that descended from that ancestral species.

No special training in genetics is required to appreciate the strength of the evidence that these examples provide. Nor does it require special insight to see that attempts made by antievolutionary groups to refute this evidence face an uphill battle. Its daunting nature notwithstanding, some have undertaken just that task, since the evidence is too compelling to ignore, and too risky to leave unanswered.

Bringing it together: antievolutionary approaches to pseudogenes, unitary and otherwise, miss the mark

Now that we have covered significant ground with respect to what various classes of pseudogenes are and how they arise, we are now able to properly evaluate antievolutionary arguments put forward in an attempt to discredit these lines of evidence for evolution. Attempts to discredit unitary pseudogene evidence generally have one or both of the following two approaches, which we will evaluate in turn:

Approach 1: Discuss rare examples of processed pseudogenes that have acquired function, and imply that all pseudogenes, including unitary pseudogenes, will similarly be shown to have function.

This approach is a fairly common one in the antievolutionary literature, and examples abound. We have examined previously how processed pseudogenes may, in rare cases, acquire a function and come under selection. Note well: the vast, vast majority of processed pseudogenes are not functional and are slowly mutating beyond recognition as DNA not under selection. While rare examples that have acquired function are very interesting from a scientific perspective, they do not “confer functionality” on the remainder of processed pseudogenes, let alone on unitary pseudogenes.

The other issue with this argument is that in many cases we know what the function of the unitary pseudogene once was. We know what the function of vitellogenin is, for example – and we can find this gene in modern-day egg-laying animals. When we see the remnants of this sequence in the human genome it is a stretch to argue that it has another, as of yet unknown function. When we see the human pseudogene sitting between two other genes in the human genome the same order as we observe in the chicken genome, it stretches credibility well past the breaking point.

Approach 2: Claim that unitary pseudogenes with mutations shared across species are the result of non-random mutations that occurred independently in the two species, and are not inherited from a common ancestor.

This argument, though having an appearance of validity, is similarly doomed to frustration. While mutations are not entirely random (certain regions of the genome mutate more readily than others) there is no known mechanism that could create the precise, repeated pattern of shared mutations we observe between related species. The most significant attempt to mount this type of argument against unitary pseudogenes in general was directed at the GLO pseudogene, and I have already discussed the specific details of why that attempt was inadequate. No refinement of that argument, to my knowledge, has been put forward since.

In summary, pseudogenes in general, and unitary pseudogenes in particular, remain a significant thorn in the side of antievolutionary groups. In the next post in this series, we’ll cast our net wider and explore an example of how multiple, convergent lines of evidence support evolution, often in unexpected ways.

For further reading:

http://biologos.org/blog/signature-in-the-pseudogenes-part-1
http://biologos.org/blog/signature-in-the-pseudogenes-part-2
http://biologos.org/blog/a-tale-of-three-creationists-part-3