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        <title>Custom Feed &#45; The BioLogos Forum</title>
    <link>http://biologos.org/resources/find/Blog/sort&#45;by&#45;Newest/sort&#45;by&#45;Newest/Atheism &amp; Scientism,Human Origins?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
    <description>This is a custom feed of BioLogos resources. Make a new feed at http://biologos.org/resources/find</description>
    <dc:language>en</dc:language>
    <dc:rights>Copyright 2013</dc:rights>
    <dc:date>2013-06-20T00:23:24-08:00</dc:date>    
    
    

            
            
        
      <item>
        <title>Series: The Human Fossil Record</title>
        <link>http://biologos.org/blog/series/human&#45;fossil&#45;record?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/human&#45;fossil&#45;record?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In this series, James Kidder provides an intriguing study on transitional fossils and the evolutionary history of modern humans.  He begins by discussing the fossil record, explaining how new forms are classified. He then explains the physically distinguishing trait of humankind—bipedalism.  From the discovery of Ardipithecus, the earliest known hominin, to the australopithecines, the most prolific hominin, Kidder focuses on the discovery, the anatomy, and the interpretation of these ancestral remains.</description>
        <content:encoded><![CDATA[<p class="intro">This blog was originally posted on December 10, 2010. We think it was an important one.  Note though that it was posted shortly before the discovery of <a href="http://biologos.org/blog/a-geneticists-journey.html" target="_blank">Denisovans.</a>  So now one more red bar needs be added to the figure above.</p>

<h3>Transitional Fossils</h3>

<p>Some time ago, the Discovery Institute’s Casey Luskin <a href="http://www.evolutionnews.org/2010/03/smithsonians_new_human_origins033371.html" target="_blank">commented</a> on the human origins exhibit at the Smithsonian Institution, suggesting that palaeoanthropologists use evolutionary theory to describe the progression of the human lineage even when they don’t have transitional fossils with which to work.  He writes:</p>

<blockquote><p>What's ironic, however, is that if you ask the question How Do We Know Humans Evolved? the answer you’re given is, “Fossils like the ones shown in our Human Fossils Gallery provide evidence that modern humans evolved from earlier humans.” So whether you find fossils or you don’t, that’s evidence for evolution.</p></blockquote>

<p>Indeed, it has become an article of faith for those espousing both the young earth creation (hereafter YEC) model and many who hold to the intelligent design model that transitional fossils do not exist and therefore evolution has not taken place.  Support for this position usually entails attacking the weak areas of the fossil record, where burial processes have left us little with which to work, or the creation of straw men arguments in which transitional fossils are defined in such a way that none could ever be found.  Often this centers on the concept of “missing link,” a term that is habitually used in the popular press and young earth creation and intelligent design literature when referring to fossil remains but which has little to no meaning for biologists or palaeontologists.  As Ahlberg and Clack (Ahlberg and Clack 2006) write:</p>

<div class="see-also" id="phylo" style="display:none;">Phylogenetics is the study of evolutionary relatedness among organisms.</div>

<blockquote><p>But the concept has become freighted with unfounded notions of evolutionary ‘progress’ and with a mistaken emphasis on the single intermediate fossil as the key to understanding evolutionary transitions. Much of the importance of transitional fossils actually lies in how they resemble and differ from their nearest neighbours in the <a onmouseover="toggle_visibility('phylo');" onmouseout="toggle_visibility('phylo');">phylogenetic</a> tree, and in the picture of change that emerges from this pattern.</p></blockquote>

<p>Contrary to common misconceptions, the fossil record does not record one single lineage for any family of organisms but rather a series of branches, with many related species coexisting synchronously.  Darwin hypothesized that the evolutionary record reflected this bushiness and drew such a diagram in his journal.    At the time, though, he had little in the way of fossil evidence to back up this position.  Much has changed since his day.</p>  

<p align="center"><img src="http://biologos.org/uploads/static-content/kidder_Figure_1.jpg"></p>

<p>An analogy for understanding this “bushiness” was best described by Prothero and Buell (Prothero and Buell 2007).  They suggest that the reader consider his or her own genealogy.  You and your siblings are the direct descendents of your parents and, while you are similar to them, each of you has different characteristics not shared with them as well as characteristics that you do share.  Your parents have siblings as well (your aunts and uncles), and your grandparents are their last common ancestors. These siblings have their own children (your cousins), who have different and similar traits relative to their parents.  They are broadly recognizable as being related to you (“oh, I see you have Aunt Edna’s nose”) but three or four generations out, they will become less and less so.  These are the “nearest neighbours” that Ahlberg and Clack describe. In this analogy, each of these cousins represents a transitional form from what was (your grandparents) to what <em>will be</em> down the road.</p>

<p align="center"><img src="http://biologos.org/uploads/static-content/kidder_figure_3.jpg"></p>

<p>For example, no one would confuse a frog with a salamander but if you trace the fossil record of each back in time, eventually you encounter a fossil, <em>Gerobatrachus hottoni</em> which was recently discovered (Anderson et al. 2008) that is best described as a “frogamander,” having the basal characteristics of both frogs and salamanders. Had we seen such an animal at the time, it is likely we would not have found it remarkable because it would have resembled the species around it.  One lineage eventually diverged into frogs, salamanders and other amphibians.  Most (just like Darwin proposed in his tree diagram with the little hatch marks at the tip of many branches) went extinct.</p>

<p align="center"><img src="http://biologos.org/uploads/static-content/kidder_Figure_2.jpg"></p>

<h3>Taxonomy and the Beginnings of Human Origins</h3>

<p>All life is classified based on a system devised by Carolus Linneaus in 1735 in his remarkable work <em>Systema Naturae</em>.  This system gives all recognized species an individual place based on a system of hierarchy. The study of classification is known as taxonomy.  A taxonomic ranking for humans would be this:</p>

<p align="center"><img src="http://biologos.org/uploads/static-content/kidder_figure_5.jpg"></p>

<p>When a fossil is excavated, the first thing that the palaeontologist does is make a taxonomic assessment of where it fits in a sequence of known fossils.  Traits that are shared with other like species or genera are referred to as primitive traits.  Examples of this in humans are five fingers and the presence of three arm bones.  We share this with all mammals.  Traits that are new or are not shared with other like species are referred to as derived traits.  Examples of this in humans are the skeletal changes in the pelvis and the foot to allow for walking upright.  We do not share these with any other primates.</p>

<p>Transitional fossils in the human fossil record are distinguished at both the genus and species level.  This group includes the extinct genera <em>Ardipithecus</em> and <em>Australopithecus</em> and the current genus <em>Homo</em>.  All species except <em>Homo sapiens</em> are extinct.  Much of the recent study of early humans focuses on the transition from <em>Ardipithecus</em> (‘Ardi’) to <em>Australopithecus</em> (‘Lucy’ and similar fossils) and from <em>Australopithecus</em> to <em>Homo</em>, the genus that led eventually to us.  While each of the australopithecine species identified in the fossil record has derived characteristics that separate them from their ancestors and from each other, only one led to the genus <em>Homo</em>.</p>

<p align="center"><img src="http://biologos.org/uploads/static-content/kidder_Figure_4.jpg"></p>

<p>In future posts, I will describe the evidence for human evolution and why this evidence is compelling.  It suggests that we have had a long, varied history filled with great leaps of change, crushing defeat, and eventual expansion into all areas of the globe.</p>

<h3>Notes</h3>
<p>Ahlberg, P. & J. Clack (2006) A firm step from water to land. <em>Nature</em>, 440.</p>
<p>Anderson, J. S., R. R. Reisz, D. Scott, N. B. Frobisch & S. S. Sumida (2008) A stem batrachian from the Early Permian of Texas and the origin of frogs and salamanders. <em>Nature</em>, 453, 515-518.</p>
<p>Prothero, D. & C. Buell. 2007. <em>Evolution: What the fossils say and why it matters</em>. Columbia Univ Pr.</p>
]]></content:encoded>
        <pubDate>Wed, 29 May 13 08:00:12 -0700</pubDate>
        <dc:creator>James Kidder</dc:creator>
        <!--<dc:date>May 29, 2013 08:00</dc:date>-->
      </item>
            <item>
        <title>Humanity as and in Creation</title>
        <link>http://biologos.org/blog/humanity&#45;as&#45;and&#45;in&#45;creation?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/humanity&#45;as&#45;and&#45;in&#45;creation?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Christian theology asserts that humans are spiritual creatures, a unity of body and spirit or “soul,” integrated, not reducible downwards to mere matter or upwards to mere spirit.</description>
        <content:encoded><![CDATA[<p>The second chapter of Genesis offers an enduring image for the creation of humanity: “the LORD God formed a man from the dust of the ground and breathed into his nostrils the breath of life, and the man became a living being.”</p>

<p>What does it mean for humanity to be created “from the dust of the ground?”</p>

<p>In many ancient Mesopotamian creation stories, human beings were depicted as deriving from some physical part of the gods. Often this was the result of conflict: humans arose from the blood, flesh or tears of gods slain by other gods. Humans created in this fashion were supposed to serve the gods by performing menial work that the gods had tired of doing themselves. The lot of humanity, then, was one of violence and servitude.</p>

<p>In the Israelite creation stories reflected in Genesis 1 and 2, however, humans are made from the ordinary material of creation: “dust.” Humans are made of earth-stuff, not god-stuff.</p>

<p>At first glance, it may seem that this lowers the status of the human creature. We might ask the question raised by Eliphaz in the book of Job:</p>

<blockquote><p>Can a mortal be more righteous than God?<br />
Can even a strong man be more pure than his Maker?<br />
If God places no trust in his servants,<br />
if he charges his angels with error,<br />
how much more those who live in houses of clay,<br />
whose foundations are in the dust, who are crushed more readily than a moth! (Job 4:17-19)</p>
</blockquote>

<p>Indeed, our humble origins ought to remind us of the fragility of our lives. As the Psalmist says,</p>

<blockquote><p>You turn people back to dust, saying, “Return to dust, you mortals.”<br />
A thousand years in your sight<br />
are like a day that has just gone by,<br />
or like a watch in the night.<br />
Yet you sweep people away in the sleep of death—<br />
they are like the new grass of the morning:<br />
In the morning it springs up new,<br />
but by evening it is dry and withered.</p>
</blockquote>

<p>The elements of which our bodies are made are ordinary and abundant. Science tells us that approximately ninety-three per cent of the mass in a living human body is comprised of elements first formed through nuclear fusion in the hearts of stars. Through almost unimaginably vast and ancient cycles of stellar formation and supernova explosions, this “stardust” of elements has been spread throughout the universe. It is as though God scattered the stars across space and time to seed the universe for life, including your life and mine. And we are thereby inseparably connected to each other, to the air we breathe, to the ground we tread, to all the creatures that fill the skies and crawl upon the earth and teem in the seas, to the depths of all the heavens. We are not transcendent of creation. We are creatures.</p>

<p>Yet we are creatures into which God breathed the “breath of life.” We are stardust and more than stardust. We are not reducible to our constituent chemicals. A “man” or a “woman” is not just a gooey sack of water, carbon and trace elements. Hydrogen, oxygen and carbon are not aware of their own existence. These elements cannot reason or pray or love or write poems. Conjunctions of these elements cannot carry any persistent identity across time. They do not exercise will or intentionality or agency. They are not “selves.”</p>

<p>Most of the cells in a human body are in constant flux: aging, dividing, dying, being replaced. The surface layer of human skin is renewed completely about every two weeks. An adult’s skeleton is entirely remade over approximately ten year periods. It may be that only the neurons of the cerebral cortex and a few other types of cells persist throughout the lifetime of a human body. And eventually, it all does return to “dust.”</p>

<p>Yet we think of ourselves as persisting over time, as comprising an “identity,” a “self.” Perhaps the cerebral cortex provides the stable biological platform for identity and selfhood, but something new emerges from the chemical-electrical soup, new patterns of organization, a different level of causation. We can even make choices that reshape ourselves, both physically and psychologically. The very wiring of our brains changes when we make conscious choices. Mind is both shaped by matter and supervenes on matter.</p>

<p>Materialists who wish to collapse all of human identity into brain chemistry overstep the bounds of “science.” A fundamental principle of scientific practice is testability: is it possible to demonstrate empirically whether a proposition is false ? As Saint Augustine observed many centuries ago, the fact that I acknowledge I could be “wrong” about something means that I am a “self” who is capable of making real choices about things that are in fact true or false. “<em>Si fallor, sum</em>” Augustine said – if I can doubt, if I can be wrong, then I must exist. One who is a true materialist “all the way down” cannot test his or her materialism. There is no possibility of “being” right or wrong, indeed no possibility of “being” – there is nothing but chemistry.</p>

<p>Spiritualists who wish to degrade matter in favor of the soul or spirit likewise are not expressing a Christian anthropology. Indeed, one of the first heresies that encountered the early Christian church was Gnosticism. A core belief of Gnosticism was that matter, including the human body, was essentially evil. Salvation for the Gnostics involved the soul’s escape from the prison of embodiment and materiality. The Gnostics treated the body either with disdain – engaging in extreme ascetic practices – or with antinomian abandon – engaging in extreme sexual license. Either way, their practices were rooted in the belief that matter and the body were unimportant. It’s easy to see how this view continually creeps into both our popular culture and our Church cultures.</p>

<p>Christian theology asserts that humans are spiritual creatures, a unity of body and spirit or “soul,” integrated, not reducible downwards to mere matter or upwards to mere spirit. Perhaps there is no better way to bring these themes together than with a Psalm — here is Eugene Peterson’s paraphrase of Psalm 139 in The Message:</p>

<blockquote><p>God, investigate my life; get all the facts firsthand.<br />
I’m an open book to you;<br />
even from a distance, you know what I’m thinking.<br />
You know when I leave and when I get back;<br />
I’m never out of your sight.<br />
You know everything I’m going to say<br />
before I start the first sentence.<br />
I look behind me and you’re there,<br />
then up ahead and you’re there, too—<br />
your reassuring presence, coming and going.<br />
This is too much, too wonderful—<br />
I can’t take it all in!</p>

<p>Is there any place I can go to avoid your Spirit?<br />
to be out of your sight?<br />
If I climb to the sky, you’re there!<br />
If I go underground, you’re there!<br />
If I flew on morning’s wings<br />
to the far western horizon,<br />
You’d find me in a minute—<br />
you’re already there waiting!<br />
Then I said to myself, “Oh, he even sees me in the dark!<br />
At night I’m immersed in the light!”<br />
It’s a fact: darkness isn’t dark to you;<br />
night and day, darkness and light, they’re all the same to you.</p>

<p>Oh yes, you shaped me first inside, then out;<br />
you formed me in my mother’s womb.<br />
I thank you, High God—you’re breathtaking!<br />
Body and soul, I am marvelously made!<br />
I worship in adoration—what a creation!<br />
You know me inside and out,<br />
you know every bone in my body;<br />
You know exactly how I was made, bit by bit,<br />
how I was sculpted from nothing into something.<br />
Like an open book, you watched me grow from conception to birth;<br />
all the stages of my life were spread out before you,<br />
The days of my life all prepared<br />
before I’d even lived one day.</p>
</blockquote>
]]></content:encoded>
        <pubDate>Fri, 01 Mar 13 07:00:07 -0800</pubDate>
        <dc:creator>David Opderbeck</dc:creator>
        <!--<dc:date>Mar 01, 2013 07:00</dc:date>-->
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            <item>
        <title>Evolution, the Enlightenment, and Worldviews</title>
        <link>http://biologos.org/blog/evolution&#45;the&#45;enlightenment&#45;and&#45;worldviews?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/evolution&#45;the&#45;enlightenment&#45;and&#45;worldviews?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In this video conversation, N.T. Wright discusses how the Enlightenment worldview &#45;&#45; which clearly separates God from the world &#45;&#45; has impacted our view of Scripture, and why cleaning the &quot;spectacles&quot; through which we view the world can help us see both Scripture and the world more clearly.</description>
        <content:encoded><![CDATA[<p>In the video above, N.T. Wright discusses how the Enlightenment worldview -- which clearly separates God from the world -- has impacted our view of Scripture, and why cleaning the "spectacles" through which we view the world can help us see both Scripture and the world more clearly. In contrast to the Enlightenment, most other worldviews present a more fluid and messy interrelationship between God and the world. According to Wright, we need to learn how to navigate this fluid, messy relationship in order to learn how to read the Bible.</p>
]]></content:encoded>
        <pubDate>Fri, 08 Feb 13 11:11:50 -0800</pubDate>
        <dc:creator>N.T. Wright</dc:creator>
        <!--<dc:date>Feb 08, 2013 11:11</dc:date>-->
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            <item>
        <title>Series: Made in the Image of God: The Theological Implications of Human Genomics</title>
        <link>http://biologos.org/blog/series/made&#45;in&#45;the&#45;image&#45;of&#45;god&#45;the&#45;theological&#45;implications&#45;of&#45;human&#45;genomics?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/made&#45;in&#45;the&#45;image&#45;of&#45;god&#45;the&#45;theological&#45;implications&#45;of&#45;human&#45;genomics?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>This series by Denis Alexander reflects on advancements in genomics as well as their theological implications. He focuses on the relatedness of hominin genomes, arguing that this does not interfere with the image of God in humans. The image of God depends more on the capacity for relationship and covenant, not on a list of particular physical qualities. He then discusses why the recent studies of genomics provide “no grounds for genetic determinism.”</description>
        <content:encoded><![CDATA[<p class="intro">This post first appeared on <em><a href="http://www.huffingtonpost.com/dr-denis-alexander/human-genomics-and-human-_b_802978.html" target="_blank">The Huffington Post</a></em>.</p>

<p>The tenth anniversary of the human genome has been marked by some striking new genetic insights into human evolution and diversity. Do these new discoveries have any significance for the dialogue between science and religion in general, or for our sense of human uniqueness in particular?</p>

<p>The publication of the Neanderthal genome sequence in May 2010 set the pace. Not surprisingly -- given that our last common ancestor with the chimpanzee was around 5 to 6 million years ago, compared to a mere half a million years for our last common ancestor with the Neanderthal -- it turns out that we are genetically far closer to the Neanderthals than to the apes. In all, only seventy-eight changes in the genetic letters ('nucleotides') that would change the amino acid sequence of particular proteins were found in the Neanderthal DNA that were the same as the chimpanzee sequence but different in the human. Amongst other differences, 111 duplications of small DNA segments were found in the Neanderthal but not human sequence. Genetically we are closely related twigs on the great evolutionary bush of life.</p>

<p>But we knew that already. More surprising for many was the provocative finding that non-African humans are genetically closer to Neanderthals than African humans. In fact, the European and Asian genomes that were sequenced appear to contain one to four percent DNA of Neanderthal origin, and the gene flow that occurred appears to have been almost entirely from Neanderthal to human, rather than vice versa. How come? The most likely scenario is that there were a few instances of sexual reproduction between Neanderthals and human individuals belonging to the population that is thought to have emigrated out of Africa to populate the world sometime after seventy thousand years ago, explaining why the Neanderthal DNA sequences are not found in African genomes. The contribution of the Neanderthal genome has remained in European and Asian populations ever since.</p>

<p>To put this in perspective, most of our genes are very similar anyway to those found in Neanderthals and chimpanzees, and to other mammals like mice. We all share a "how-to-build-a-mammal" instruction manual, and the relatively minor genetic differences between us (minor relative to those we share in common) are the icing on the cake, as it were, that make us a human rather than a mouse, a chimp or a Neanderthal.</p>

<p>The year 2010 saw yet another twig appear on the hominin branch of the evolutionary bush, this time one even closer to the Neanderthals than our own. This story begins with the discovery by a Russian team of a sliver of finger bone from a remote Siberian cave in the Altai Mountains, known as the Denisova Cave. The team stored it away, thinking it was from one of the Neanderthals that frequented the cave between thirty thousand and forty-eight thousand years ago. But when DNA extracted from the bone was eventually sequenced, the results -- published just before Christmas -- revealed a population distinct from both humans and Neanderthals.</p>

<p>The finger appears to belong to a novel hominin population that shared a last common ancestor with Neanderthals more recently than humans, and overall is genetically closer to Neanderthals than to humans. It is too early to say whether the so-called 'Denisovans' represent a separate species and fossil data will be required to clarify that question. But what the results do suggest is that Melanesians -- the inhabitants of Papua New Guinea and islands northeast of Australia -- have inherited as much as one-twentieth of their DNA from the 'Denisovans', indicating that some limited inter-breeding took place between these ancient populations. Most fascinating of all is the idea that multiple hominin lineages were coexisting in Europe and Asia, along with modern humans, as recently as twenty-thousand to forty-thousand years ago.</p>

<p>Do these findings have any particular theological significance? It is difficult to know why this should be the case. In the Judeo-Christian tradition humankind uniquely is made "in the image of God". The suite of capabilities that emerged during human evolution is necessary but not sufficient to do justice to this much discussed theological insight. Our particular genetic instruction manual generates large frontal lobes, advanced cognitive abilities, rationality, language, consciousness and the ability to choose between right and wrong. It is this suite that gives us the ability to pray, worship and engage in communal religious practices.</p>

<p>But the idea of being made "in the image of God" is not encompassed simply within a static list of such human qualities. Theologians have drawn attention to the dynamic, relational aspects of the concept. It is humanity-in-relation-to-God, together with God-given responsibilities to humans in relationship with each other, that are thought to be more central to the idea. When did such spiritual capabilities and responsibilities first come into being? It is really difficult to know, but the answer certainly seems more rooted in God's intentions and purposes for humankind than in genetic change per se. Students can spend a long time being trained in the finer points of drama, but the play only gets off the ground when the actors are finally given their lines.</p>

<p>It seems quite likely that more twigs will continue to appear on the hominin branch of the bush of life as genomics continues to extend its reach. Such discoveries as such do not appear to raise any new theological questions. But other 2010 discoveries did highlight two genomic insights that do have relevance for religious views of human identity. The first insight comes from further Genome Wide Association studies that continue to subvert any lingering commitments to genetic determinism, for example the idea that there are genes "for" a particular human trait. The second insight comes from the finding that we are all more genetically different from each other than we realized even a few years ago. Genetics is underlining the uniqueness of each human individual. By the end of 2011 it is estimated that more than 30,000 human genomes will have been sequenced. Watch this space. Theological reflections on these findings will be the topic for Part 2.</p>]]></content:encoded>
        <pubDate>Tue, 15 Jan 13 06:00:13 -0800</pubDate>
        <dc:creator>Denis Alexander</dc:creator>
        <!--<dc:date>Jan 15, 2013 06:00</dc:date>-->
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        <title>Does Evolution Compromise Human Morality?</title>
        <link>http://biologos.org/blog/does&#45;evolution&#45;compromise&#45;human&#45;morality?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/does&#45;evolution&#45;compromise&#45;human&#45;morality?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Once we have a scientific hypothesis for how something exists, it is tempting to make the philosophical inference that this is also why it exists.</description>
        <content:encoded><![CDATA[<p>Once we have a scientific hypothesis for <em>how</em> something exists, it is tempting to make the philosophical inference that this is also <em>why</em> it exists.  Richard Dawkins (1976), as well as Michael Ruse and Edward O. Wilson (1993), do this in the evolution of human morality.  Scientifically, they hypothesize that, once humans started living in large, complex social groups, individuals whose genes made them constantly selfish were punished by the group and therefore produced fewer offspring than individuals whose genes made them believe in an objective moral code. Moving into philosophy, Ruse and Wilson (1993) write,</p>

<blockquote>Morality, or more strictly our belief in morality, is merely an adaptation put in place to further our reproductive end.</blockquote>

<p>Important scientific theories invite philosophical and theological reflection. Dawkins, Ruse, and Wilson, have described their conclusions. But scientific theories are often compatible with multiple philosophical and religious interpretations. For example, Newton's laws of motion and gravity allow several competing theistic and atheistic interpretations.</p>

<p>To avoid Ruse and Wilson's philosophical conclusion, we need not dispute their scientific hypothesis about how morality evolved. We need only dispute their philosophical extrapolation as to why morality exists. Even if we restrict ourselves to an atheistic worldview, this extrapolation is questionable.  Donald MacKay (1965) would call this an example of "the fallacy of nothing but-tery".  This is the assertion that a description of something at one level renders other levels of description meaningless.  From our everyday experience, we know that a successful description on one level does not invalidate other levels of description.  For example. one might assert that a Shakespeare sonnet is "nothing but" ink blots on a page (MacKay 1965).  True, one way to describe a sonnet is to precisely specify the page coordinates of every ink blot.  This description is valid and complete on its own level; however, one could also analyze the sonnet linguistically, emotionally, socially, historically, and on other levels.  If one is programming an inkjet printer, the most important description is in terms of ink blot coordinates. For almost every other purpose in life, however, that is an unimportant level of description.  In the same way, a complete evolutionary description of the existence of morality does not necessarily invalidate the truth, utility, or significance of other levels of description of morality.</p>

<p>If we do not restrict ourselves to atheism and instead allow for the existence of a creator, the extrapolation from <em>how morality evolved</em> to <em>why morality exists</em> fails further. Consider an analogy.  Suppose an inventor builds a robot which could do a variety of useful things-- mow the lawn, clean the house, grade homework, write book chapters, and so on.  One thing this robot can do, given a complete set of spare parts, is build a replica of itself.  Whenever the inventor needs another robot, she gives one robot a set of spare parts and has it build a replica of itself.  Amongst all the software subroutines within this robot, there is a set of subroutines that govern the robot's self-replication, including the replication of those self-replication subroutines.  Would it be correct to say that the purpose of the robot's existence is merely to reproduce those particular self-replication subroutines? Do all of the other software and hardware of the robot--which allow it to mow the lawn, and so on-- merely further the reproductive ends of those self-replication subroutines? At one level, the robot's hardware and software do serve to reproduce those self-replication software routines.  At another level of analysis, however, those self-replication software routines serve the robot to produce more copies of itself.  At still another level, those self-replication software routines serve the robot's creator.  The creator of the robot should get the last world as to which of those levels of description is most important.</p>

<p>In humans, does morality exist to further the reproduction of certain genes, or do those genes exist in order to allow for the production of new human beings who can behave morally? If human beings have a creator, the creator gets the final word on the question of purpose.  The mechanism which the creator used to make those genes-- whether <em>de novo</em> or via evolution-- is secondary.  The creator's purpose in creating those genes decides the issue.</p>

<h3>References</h3>
<ul><li>Dawkins, Richard. 1976. Pp. 1-11 in <em>The Selfish Gene</em>. Oxford: Oxford University Press.</li>

<li>MacKay, Donald. 1965. <em>Christianity in a Mechanistic Universe</em>. Chicago: InterVarsity.</li>

<li>Ruse, Michael, and Edward O. Wilson. 1993. The approach of sociobiology: The evolution of ethics. In <em>Religion and the Natural Sciences</em>, ed. James E. Huchingson. Fort Worth: Harcourt Brace Javonovich.</li></ul>
]]></content:encoded>
        <pubDate>Mon, 14 Jan 13 04:00:14 -0800</pubDate>
        <dc:creator>Loren Haarsma</dc:creator>
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        <title>Why Strict Atheism Is Unscientific</title>
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        <description>Do you believe in God? If a cadre of outspoken, strong atheists wrote a litmus test for scientists, that might very well be question #1.</description>
        <content:encoded><![CDATA[<p>Do you believe in God?</p>
<p>If a cadre of outspoken, strong <a href="http://en.wikipedia.org/wiki/Atheism">atheists</a> wrote a litmus test for scientists, that might very well be question #1.</p>
<p>"Scientists,  if you're not an atheist, you're not doing science right," PZ Myers --  a well-known blogger, biology professor and atheist -- regularly <a href="http://www.youtube.com/watch?feature=player_embedded&amp;v=TdKU_zvVAno">preaches</a>.</p>
<p>But if this is true, then as many as <a href="http://news.discovery.com/tech/are-scientists-atheists.html">half of scientists are doing science wrong</a>.  A 2009 study from the Pew Research Center polled members of the  American Association for the Advancement of Science (AAAS). Fifty-one percent of  respondents reported a belief in a higher power. Does this mean that  it's too late for science? Has religion already pillaged the minds of  researchers worldwide? No, of course it hasn't.</p>
<p>"It seems to me that we as a society have lately been caught in this  false dichotomy where it's either God as the guy with the beard on the  cloud or nothing at all," neuroscientist David Eagleman <a href="http://news.discovery.com/tech/are-scientists-atheists.html">told</a> <em>Discovery News.</em></p>
<p>Staunch  atheists often falsely characterize followers of religion as being  "all-in" with their beliefs, opining that they ascribe to the whole  creationist, woo-y shebang. "Where's your evidence?" atheists mockingly  question. "You can't prove that God exists!" they accuse (correctly).  Yet, hypocritically, strict atheists are guilty of the exact same crime:  belief without evidence.</p>
<p>"We know too little to commit to a position of strict atheism. [But] we  know way too much to commit to any particular religious story," Eagleman <a href="http://blogs.howstuffworks.com/2010/11/22/possibilianism/"> said</a>.</p>
<p>Just  as it's a leap of faith for a religious person to assert that God  incontrovertibly exists, it's an equally large leap for a strict atheist  to declare, without question, that God does not exist. As Carl Sagan  eloquently explained:</p>
<blockquote>An atheist is someone who is certain that God does not exist, someone  who has compelling evidence against the existence of God. I know of no  such compelling evidence. Because God can be relegated to remote times  and places and to ultimate causes, we would have to know a great deal  more about the universe than we do now to be sure that no such God  exists. To be certain of the existence of God and to be certain of the  nonexistence of God seem to me to be the confident extremes in a subject  so riddled with doubt and uncertainty as to inspire very little  confidence indeed.</blockquote>
<p>Absence of evidence is not  evidence of absence. As this statement applies to science, so does it  apply to religion. History is replete with signs that an all-powerful  deity may not exist, but such substantiation is nowhere near  tantamount to proof -- especially, <a href="http://en.wikipedia.org/wiki/Religious_views_of_Albert_Einstein">as</a> Albert Einstein said, in a universe as incomprehensibly vast as our own:</p>
<blockquote>The  human mind, no matter how highly trained, cannot grasp the universe. We  are in the position of a little child, entering a huge library whose  walls are covered to the ceiling with books in many different tongues.  The child knows that someone must have written those books. It does not  know who or how. It does not understand the languages in which they are  written. The child notes a definite plan in the arrangement of the  books, a mysterious order, which it does not comprehend, but only dimly  suspects. That, it seems to me, is the attitude of the human mind, even  the greatest and most cultured, toward God. We see a universe  marvelously arranged, obeying certain laws, but we understand the laws  only dimly.</blockquote>
<p>Ultimately, the key is not to be swayed  to one extreme or the other -- fundamentalist religion or strict  atheism -- but to walk a reasoned middle path. Eagleman believes that  path is "possibilianism," the concept of holding multiple beliefs or  hypotheses whilst exploring new ideas.</p>
<p>"The goal is to avoid committing to any particular story," Eagleman <a href="http://news.discovery.com/tech/are-scientists-atheists.html">told</a><em> Discovery News</em>, "whether that's religious fundamentalism or strict atheism. The  goal of possibilianism is to retain the wonder that drives us all into  science in the first place and to avoid acting as though we know the  answers to things we can't possibly know at the moment."</p>
<p>Strict  atheists do the world an incredible service by promoting the scientific  method, skepticism, and critical thinking. But they do a disservice by  campaigning against religion or touting -- as pure truth -- the  non-existence of God, for those actions (especially the latter) are just  as unscientific as a blind belief in all aspects of religion.</p>
<p>This summer, a <a href="http://www.washingtonpost.com/national/on-faith/poll-shows-atheism-on-the-rise-in-the-us/2012/08/13/90020fd6-e57d-11e1-9739-eef99c5fb285_story.html">worldwide poll</a> showed that atheism is on the rise and religiosity is on the decline.  It is my hope that these "New Atheists" and agnostics won't narrowly focus  on denigrating religion, but will instead focus on encouraging  open-mindedness and discouraging fundamentalism.</p>
<p>That would surely make the world a more enlightened place.</p>]]></content:encoded>
        <pubDate>Wed, 19 Dec 12 11:20:38 -0800</pubDate>
        <dc:creator>Ross Pomeroy</dc:creator>
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        <title>Can Science Ever Know Enough?</title>
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        <description>To say something is poetic is not to declare it ultimately untrue, futile and meaningless—it is to say it is more profound and meaningful and true than many other modes of expression.</description>
        <content:encoded><![CDATA[ 
<blockquote><p>There are more things in heaven and earth, Horatio, than are dreamt of in your philosophy.</p>
<p style="float:right;"><strong>—Hamlet Act 1, Scene 5</strong></p></blockquote>

<p>&nbsp;</p>

<p>We live in a world driven by the gods of economics, technology and science.  Particularly in a time of economic austerity, it is tempting to see the arts or humanities as an optional “extra”—a happy by-product of those true engines of society when they are running smoothly. But in this article we will look at how a biblically informed worldview might turn this perspective on its head, and what the humanities might have to tell us about the present contours of the science and faith conversation.</p>

<p>In his iconic 1959 Rede lecture, “The Two Cultures,” CP Snow noted the dysfunctional relationship between science and the humanities, arguing that the situation is principally the result of our educational system in the West. Ken Arnold, from the medicine and arts focused <a href="http://www.wellcomecollection.org/about-us.aspx">Wellcome Collection</a> in London, believes that the split continues today, but with the further extension that </p>

<blockquote>In emerging countries . . .  amongst the middle classes there is a strong pressure to join the ranks of doctors and scientists and engineers because they see that as the place where future economies are growing. . . . In some ways you could almost begin to feel sorry for the arts and the humanities because they seem to be worth less than the sciences.<sup>1</sup></blockquote>

<p>Is Protestant Christianity also peculiarly prone to such thinking? A skepticism of art in religious spaces as a result of iconoclasm and the reformation, combined with a proud history of the protestant work ethic, economic success, and a profound influence on the history of science, might lead Protestants to be more inclined towards the sciences and technology than to the arts. However, there are more corrosive reasons that science has usurped the humanities in our culture than merely educational or theological bias.</p>

<p>In the early 20th century, logical positivists regarded the humanities as expressions merely of our inner states and desires, but having nothing to do with objective reality. Such imperialistic claims to knowledge denied that other knowledge claims referred to any true reality, and were therefore not really forms of knowledge at all. Bertrand Russell writes, </p>

<blockquote>But if there is a world which is not physical, or not in space-time, it may have a structure which we can never hope to express or to know … Perhaps that is why we know so much physics and so little of anything else.<sup>2</sup></blockquote>

<p>Christian scientists are of course very sensitive to this, and work hard to explain that science cannot answer questions of ultimate meaning or the existence of God, which are beyond the scope of science.  Often, this line of thinking can be narrow in focus, delineating the limits of the science, and naming those assumptions made by science that cannot be justified empirically. Such arguments can be very fruitful within this narrow context, but we should not be led into thinking that our true perception of reality is limited to such analytic and evidential approaches.  There are fields of inquiry that science isn’t able to explain (such as metaphysical judgments, ethics, and beauty), and even our confidence in mathematics— upon which so much of science itself is based—rests upon assumptions that cannot be experimentally demonstrated. </p>

<h3>The human condition</h3>

<p>Mathematics and the sciences do seem to provide tools by which we are able to perceive the external world and its regularities. However, the arts and humanities, too, are a way of understanding reality, and they tell us less about external reality than the internal human condition. The problem is that the ‘human condition’ seems to have been relegated by many to the realm of mere desire and subjective feeling and, therefore, not <em>reality</em>. </p> 

<p>The modernist account of science is that, through our reason, we are somehow able to get outside of nature and describe it objectively. The biblical account, though, has human beings as part of the created order, and so embedded in nature—made from the dust of the earth.  Given that, human thought life is also part of the natural world, even despite the fact that it is not best described by the sciences.</p>

<p>The works of Shakespeare, for instance, are part of the created order, as are the poems of Wordsworth, the sculptures of Michaelangelo, and the music of Bach, not to mention children’s nursery rhymes, home decoration, and humming tunes whilst waiting for the bus. As C. S. Lewis wrote, "This is not panache, it is our nature." <sup>3</sup></p>  

<p>A little reflection on life reveals something very strange going on here. Somehow, the mythic ‘war’ between science and religion has become the dominant battleground for defending the Christian faith, and competing explanations of the material world are used as apologetic weapons.  But the reality is that science plays a peripheral role in our experience of life, not least our life as Christians. Of course that is not to deny the enormous impact of science on the material conditions of our lives, or the prevalence of the products of science. Instead, it is to observe that science plays a facilitatatory role, enabling us to carry out the real core business of our lives, which does not revolve around science. Cars, trains and airplanes are modes of transport to take us to work, or to see family, or go on holiday. Social media provide another way of being in relationship with people. Health services are not an end in themselves, but aim to make people well, so that they can get on with their lives. Why then, when life is not about science, does science dominate our way of thinking about life?</p>

<p>In focusing so much energy on opposing positivism are we not being inadvertently drawn into a positivist way of thinking, that science and material explanations of things are, indeed, our basic reality, what is ultimately true?</p> 

<h3>A biblical model</h3>

<p>“We feel,” wrote the philosopher Ludwig Wittgenstein, “that even when all possible scientific questions have been answered, the problems of life remain completely untouched.” <sup>4</sup> Likewise, philosopher Susanne Langer questions any philosophy which claims to be able to explain everything:</p>

<blockquote>Philosophers in every age have attempted to give an account of as much experience as they could. Some have indeed pretended that what they could not explain did not exist; but all the great philosophers have allowed for more than they could explain, and have, therefore, signed beforehand, if not dated, the death-warrant of their philosophies.<sup>5</sup></blockquote> 

<p>Fortunately, the Bible preserves us from total positivist oblivion. There are a great many types of literature represented in the Bible, with the notable exception of scientific writing. If we long to be able to express our deepest emotions, we have the psalms; if we are looking for wise advice, we have the proverbs; if philosophical reflection, Ecclesiastes. There is poetry, song, history, biography, but there is no science. In addition, the Bible refers to the use of the visual arts in, for example, the designs of the tabernacle and temple.  The Bible does seem to think the arts and humanities are fundamental for human life, but it doesn’t seem to think that what we think the physical world is constructed of matters much at all.</p>

<p>Do we sometimes read the Bible more like a science textbook than a novel or a poem?  Most will agree that each type of literature needs to be read in its own way, but lip-service to that idea notwithstanding, recent arguments prove that it is still possible to read a poem with a scientific mentality—looking out for the ‘facts.’  Is that because we have too high a view of science, or because we have too low a view of the humanities? To say something is poetic is not to declare it ultimately untrue, futile and meaningless—it is to say it is more profound and meaningful and true than many other modes of expression.</p>

<p>According to Langer, part of the problem is the priority that has been accorded to discursive language as the only valid way we have of representing reality to each other.  She observes that a study of symbolism shows us that this is actually only one way humans use to abstract from reality, and in fact, the situation even with discursive language isn’t as simple as has been made out. She notes that our sensory organs mediate our perceptions of the world and are already on the job— formulating, framing the world to us—before our cognitive apparatus gets to work. It must be so, or we would not be able to evaluate the importance of the vast array of sensory data we receive and reality would appear as a blur.</p>

<p>A linguistic symbol carries a concept we associate with it, which in turn denotes a reality. In language there is a commonly agreed definition for each word we use, thus enabling communication. But each person also has associations unique to him or her which color any particular concept. Though such personal associations with words are present all at once, they can only be expressed and communicated one at a time, because language is also sequential.</p>

<p>A picture also acts symbolically, though in a different way. Even something as ‘realistic’ as a photograph is likewise a representation of reality and not the reality itself. It also carries with it layers of meaning which reflect the subjective intentions of the person who took the photograph, and opens up for interpretations and associations of the person ‘reading’ the picture. A picture, though, is not sequential. All the information comes at once, and individual blotches of color carry no significance on their own, but only as part of the whole.</p>

<p>No amount of words could ever describe a picture in full. The number of blotches of color and their relations to each other are vast in their complexity, and one could never read words quickly enough to carry the meaning a picture brings in an instant, even if it warrants a far longer period of contemplation.  Indeed, though we are only speaking here of visual perception, the same is true of our other sensory inputs, too: they all carry knowledge in quite distinct and profound ways, whilst we, in line with the Greeks, have tended to give sight a special place as the most ‘objective’ of our senses.</p>

<p>As we dig down into empirical science and explore the mechanisms by which sights and sounds and textures are transmitted and processed by the brain, we discover that the meaning of the sense-data which we perceive and which we attempt to describe is likewise profoundly limited by the use of words—much less mathematics—and that our science, as such, represents a tiny fraction of reality.</p>

<p>To suggest, then, that science is the only true way of representing reality—as positivism has done—or to exclude the humanities from our world, leaves us without a proper or even adequate means of expressing the significance we attach to even the most mundane day-to-day activities. Science is very good at describing the regularities of the physical world, but the experience of being human is no less part of the real natural world than are the structure of proteins or the movement of planets, and science does not have the appropriate tools to explore our inner worlds.</p>

<p>Nowadays it seems that Christian cultural life has also too-often failed to fully acknowledge other ways of representing reality than materialist science—ironic because this state of affairs is so at odds with the Bible’s model of using the arts and humanities to profoundly explore the human condition.   Perhaps it is time to recover that side of the biblical witness, and remind ourselves that there are more ways of representing the world to each other than positivism has ever dreamt.</p>

<h3>Notes</h3>

<p class="date">1. BBC Radio 4, “The Life Scientific”, Tuesday 25th September 2012.<br />

2. Bertrand Russell, “Philosophy”, New York. W.W.Norton &Co, 1927, page 265, quoted by Susanne K. Langer, <em>Philosophy in a New Key</em>, Harvard University Press, 1979, page 88.<br />

3. C. S. Lewis, “Learning in War Time” in <em>Fernseed and Elephants and other Essays on Christianity</em>, Fontana, 1975, page 28.<br />

4. Ludwig Wittgenstein, <em>Tractatus Logico-Philosophicus</em>. Routledge and Kegan Paul, 1951, page 187.<br />

5. Susanne K. Langer, <em>Philosophy in a New Key: A Study in the Symbolism of Reason, Rite and Art</em>. Harvard University Press, 1979, p 5.</p>]]></content:encoded>
        <pubDate>Mon, 29 Oct 12 04:59:52 -0700</pubDate>
        <dc:creator>James May</dc:creator>
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        <title>Denisovans, Humans and the Chromosome 2 Fusion</title>
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        <description>The Denisovans, an extinct hominid group that interbred with modern humans, made the news again lately with the publication of a more detailed study of their genome. One of the many interesting findings was that the Denisovans share the same chromosome 2 fusion that modern humans have.</description>
        <content:encoded><![CDATA[<br> </br><p>The Denisovans, an extinct hominid group that interbred with modern humans, made the news again lately with the publication of a more detailed study of their genome. One of the many interesting findings was that the Denisovans share the same chromosome 2 fusion that modern humans have. In this post, I review what we know about the origins of human chromosome 2, and then discuss the new Denisovan findings and their implications. </p>

<h3>The origins of human chromosome 2: a brief review</h3>
<p>Though I have discussed the evidence for a fusion event leading to human chromosome 2 before, perhaps a brief review of the evidence is in order. The human genome is made up of 23 pairs of chromosomes (for a total of 46 chromosomes). This makes us something of an oddity among living great apes, all the rest of whom  have 24 pairs of chromosomes (for a total of 48). Given that there are many independent lines of evidence that support the conclusion that we share a common ancestor with other great apes, this poses something of a conundrum: how is it that our species arrived at this specific chromosome number? If we were to represent this “problem” on a phylogeny, or tree of relatedness, it would look something like this (not to scale):</p>

<p class="caption-center"><img src="http://biologos.org/uploads/static-content/denisovans_fig_1.jpg" alt="" height="357" width="434"  /></p>
 
<p>Our closest living relatives, chimpanzees and bonobos, both have 48 chromosomes, as do all other great apes such as gorillas and orangutans. This pattern has one of two explanations, one of which is much more likely than the other. Either the common ancestor to these species had 48 chromosomes, and there was an event that reduced that number to 46 specifically on the lineage leading to humans (option A), or the common ancestor species had 46 chromosomes, and there were independent, repeated events that increased chromosome number in all other great ape species (option B). We can compare these options by placing the required event(s) on the phylogeny (again, not to scale): </p>

<p class="caption-center"><img src="http://biologos.org/uploads/static-content/denisovans_fig_2.jpg" alt="" height="300" width="570"  /></p>
 
<p>It should be obvious that the option that requires the fewest events is the more likely one – in this case option A with an event that reduces chromosome number in the lineage leading to humans. The other option, that of repeated, independent events to increase chromosome number, remains a formal, but unlikely, possibility. Events that reduce chromosome number are not frequent occurrences, so Option A is more likely than Option B.</p>

<p>We can also find further support for Option A, because it predicts a specific type of event, namely one that reduces chromosome number. Since <em>loss</em> of a large amount of chromosomal material is almost always detrimental, we need an event that reduces chromosome number without losing information. One way for this to happen is for two chromosomes to fuse together and become one. Initially, this event would produce an individual with 47 chromosomes, where two different chromosomes get stuck together. Contrary to what is often assumed, this individual would be fertile and able to interbreed with the others in his or her population (who continue to have 48 chromosomes). In a small population, over time, two relatives who both have one copy of the fusion chromosome may mate and produce some progeny with two copies of the fused chromosome, or the first individuals with 46 chromosomes. Since either a 48-pair set or a 46-pair set is preferable for ease of cell division, this population will either eventually get rid of the fusion variant (the most likely outcome), or by chance will switch over completely to the “new” form, with everyone bearing 46 chromosome pairs. While not overly likely, this type of event is not especially rare in mammals, and we have observed this sort of thing happening within recorded human history in other species.  Some mammalian species even maintain distinct populations in the wild with differing chromosome numbers due to fusions, and these populations retain the ability to interbreed. </p>

<p>Further evidence for a fusion event in the lineage leading to modern humans comes from comparing <em>synteny</em>, or gene locations and orders on chromosomes within modern great apes – an issue we have discussed <a href="http://biologos.org/blog/signature-in-the-synteny">here</a> before.  In brief, what we see in human chromosome 2 is exactly what we would predict for a fusion event. When compared to other great apes, we see the genes on human chromosome 2 match up, in order, with two smaller ape chromosomes. We also see that sequences used at the tips of chromosomes are present at the proposed fusion site, and that human chromosome 2 has not one but two sites for the cell cytoskeleton to attach to for cell division – but that one of the sites is mutated and not functional, though it lines up precisely with the location of this site on the appropriate ape chromosome. Together, this evidence consistently supports both common ancestry for humans and great apes, and specifically that the difference we see in our chromosome numbers arose due to a single fusion event. I briefly discussed this evidence in my <a href="http://biologos.org/blog/the-sorrows-and-joys-of-teaching-evolution">last post</a> where I describe how I teach some of this material and the compelling impact it has on students exploring the evolution question for the first time. </p>

<h3>Enter the Denisovans</h3>
<p>With that as background, we are now prepared to appreciate a new finding that comes from genomics work done on the Denisovan hominids, an archaic species that is more closely related to Neanderthals than to us, but that nonetheless interbred with some anatomically modern humans as they migrated out of Africa and populated the globe. (For those not familiar with the Denisovans, or the evidence for our interbreeding with them, both Darrel Falk and I have written on this previously, <a href="http://biologos.org/blog/a-geneticists-journey">here</a> and <a href="http://biologos.org/blog/understanding-evolution-neanderthals-denisovans-and-human-speciation">here</a>). Recently, a more detailed understanding of the Denisovan genome <a href="http://www.nature.com/news/new-dna-analysis-shows-ancient-humans-interbred-with-denisovans-1.11331">was published</a>, and nested in the new information is the discovery that the Denisovans share the 46 chromosome set with the same fusion that <a href="http://johnhawks.net/weblog/reviews/denisova/denisova-chromosome-2-2012.html">we have</a>. This strongly supports the hypothesis that the fusion event predates the separation of our species. If we were to represent this on a phylogeny, we can now place this event with more accuracy than before (as before, the phylogeny is not to scale): </p>

<p class="caption-center"><img src="http://biologos.org/uploads/static-content/denisovans_fig_3.jpg" alt="" height="452" width="513"  /></p>
 
<p>Despite this new information, one obvious question remains. Did the Neanderthals also have the 46-pair set? From looking at the phylogeny above, we can see that the most likely answer is that they did, since the fact that the Denisovans had it strongly implies that the last common ancestor of humans and Neanderthals / Denisovans had it as well, and the Neanderthal-Denisovan split comes later. While the Denisovan DNA samples are of high enough quality to make this assessment, we do not yet have Neanderthal DNA of high enough quality to do the same analysis with current methods (though one additional feature of the new work on the Denisovan genome is developing more sensitive DNA sequencing techniques that may resolve this question in the future).</p>

<p>In other words, this fusion seems to be an ancient one, predating our species by several hundred thousand years. Present estimates of the last common ancestor between humans and Neanderthals / Denisovans  range at about 800,000 years ago.</p>

<h3>Implications for understanding our “becoming human”</h3>
<p>The main implication from this work is that it places the fusion event well before the advent of our species. I’ve often chatted informally with Christians about evolution, and at times some have thought that this fusion event was what “started” our species, or made our species unable to interbreed with other groups. Some have even suggested that perhaps the fusion event was what produced the first human (i.e. Adam). </p>

<p>Note that thinking this way suggests a misunderstanding of how chromosome fusions occur and what effect they have on their hosts. A fusion does not precipitate a speciation event, but rather the individual with the fusion remains a part of his or her population, and able to interbreed, even if with reduced fertility. Also, there is no necessary biological effect or change that the fusion produces on the appearance of the organism.  These misunderstandings aside, however,what this new evidence shows is that this fusion event took place long before modern humans arose at around 200,000 years ago. Indeed, the 800,000 years ago date for the last human - Denisovan common ancestor means that this is the most recent date possible for the fusion. While it is an interesting piece of our evolutionary history, it doesn’t seem to have much to do with how we came to acquire the traits that set us apart from, and ultimately outcompete, other similar species.</p> 
<br> </br>]]></content:encoded>
        <pubDate>Thu, 06 Sep 12 13:07:21 -0700</pubDate>
        <dc:creator>Dennis Venema</dc:creator>
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        <title>Series: Divine Action in the World</title>
        <link>http://biologos.org/blog/series/divine&#45;action&#45;in&#45;the&#45;world?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/series/divine&#45;action&#45;in&#45;the&#45;world?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In this talk, Professor Plantinga addresses the fact that many contemporary thinkers—including many theologians—believe that God cannot perform miracles, providentially guide history, or interact in the lives of people, as these activities would be contrary to science.   Plantinga, on the other hand, makes the case that this popular view is mistaken; excluding divine action in the world is not a central feature of natural science itself, but a philosophical or theological preference that has been added on to science (and can just as readily be removed).   Plantinga concludes that it is completely logical to accept the miracles of the Bible and support contemporary science.</description>
        <content:encoded><![CDATA[<p>My talk is entitled “Divine Action in the World.”  I want to talk about a certain kind of objection to Christian belief that some people raise. They claim that central thoughts, central doctrines of Christianity, are contrary to science, and therefore, are suspicious or incredible or such that one can’t sensibly hold them—can’t be rational in accepting them.</p>

<p>There are several different kinds of arguments that people bring along these lines; I want to talk about just one. So first… the Heidelberg catechism, one of the forms of unity of the church I go to (the Christian Reformed Church), says </p>

<blockquote>Providence is the almighty and ever-present power of God, by which he upholds as with his hand heaven and Earth and all creatures and so rules them, that leaf and blade, rain and drought, fruitful and lean years, food and drink, health and sickness, prosperity and poverty. All things, in fact, come to us not by chance, but from his fatherly hand.</blockquote>

<p>And part of the way it comes to us—not by chance, but from his fatherly hand—part of the way God has designed our world, is that there is a great deal of regularity and dependability in our world. Of course, if it were not for this regularity and dependability, we couldn’t do the things that we actually do. I mean, for example, if I just wanted to walk off the stage—if, for example, all the sudden those stairs over there suddenly turned into a ladder going up—well, that would make it really difficult.</p>

<p>If you are trying to build a house, for example, you have this hammer, but all the sudden the hammer turns in to a goose or a pigeon. Again, that would make things really difficult…or if the nail turned into a worm…or if you get in the car and turn the key and the car turns into a camel, things would be really hard, much harder than they are. This regularity and dependability in our world is an essential condition of our being able to live in the world in which we actually do.</p>

<p>If the world were irregular enough, we would not even be able to live in it, but there are also, according to classical Christianity here (the Heidelberg catechism, for example) there are also special divine actions; sometimes God does things specially. There are miracles in Scripture: the parting of the Red Sea, for example, Jesus walking on water, Jesus changing water into wine. There are miraculous healings: Jesus rising from the dead, Jesus raising Lazarus from the dead, and so on. And according to classical Christians, many of them, perhaps most of them, are special divine actions. God, for example, responds to prayers. He works in the hearts and minds of his children to effect sanctification. There is, what Calvin called, the internal testimony or witness of the Holy Spirit, and there is what Thomas Aquinas called the internal instigation of the Holy Spirit. So, these things are all special actions on the part of God. God constantly causes events in the world. Ok, so far fair enough—what is the problem?</p>

<p>Many theologians seem to think there is a science-religion problem here. I don’t think any of the theologians of Biola think this, (I don’t know, but I doubt it) but many theologians do. For example, Rudolf Bultmann says, “The historical method,” which of course he thinks that is the method we should use, “includes the presupposition that history is a unity in the sense of a closed continuum of effects in which individual events are connected by the succession of cause and effect. This continuum, furthermore, cannot be rent by the interference of supernatural, transcendent powers.”</p>

<p>That’s what he says. Alright, there is this continuum that cannot be rent by the interference of supernatural (that would be God) or transcendent powers. So, it is a little bit like the laws of the Medes and Persians. You probably remember Daniel. Daniel was a favorite of King Darius, and well, the other courtiers became jealous of Daniel (they didn’t like it that the king liked him so well). So, they came to the king and said, “Oh king, live forever, we think it would be a great idea if you passed an edict to the effect that you alone can be worshipped. Everybody has to worship you and nothing else.”  Well the king thought that over for a minute, and that sounded pretty good to him so he said, “I guess that it is a pretty good idea.” So he made this edict; he made this declaration: “Only King Darius is to be worshipped—no one else, nothing else.”</p>

<p>These courtiers knew that Daniel worshipped God, and they thought probably Daniel would keep right on worshipping God despite this edict. So they were watching Daniel, and he was, in fact, worshipping God. So they came to the king.  Now the penalty for worshipping something else was to be thrown into the lion’s den and they said, “Well, king live forever, looks like Daniel has been violating this edict. You have got to throw him in the lion’s den.”</p>

<p>Well, the king didn’t want to do this because he really liked Daniel. He thought this was a miserable way to proceed, and he didn’t want to do it, but then they said to him, “O king live forever, and remember a law of the Medes and Persians cannot be abrogated, even by the king himself.” So once it’s put in place, not even the king himself can change it or abrogate it or go against it.</p>

<p>That is sort of the suggestion that you get here from Bultmann. Bultmann thinks, “Maybe God created the world and set it up in a certain way, but once he did that, not even he can interfere in it”—he uses that word interference—“not even he can do anything in it. He just has to keep hands off.” It is like the law of the Medes and the Persians.</p>

<p>Another theologian who agrees is John Macquarrie, who says,</p>

<blockquote>The way of understanding miracle (and that would be one kind of special divine action) that appeals to breaks in the natural order and to supernatural intervention belongs to the mythological outlook, and cannot commend itself in a post-mythological climate of thought. The traditional conception of miracle is irreconcilable with our modern understanding of both science and history. Science proceeds on the assumption that whatever events occur in the world, can be accounted for in terms of other events that also belong within the world, and if on some occasion, we are unable to give a complete account of some happening, the scientific conviction is that further research will bring to light further factors in the situation that will turn out to be just as imminent and this worldly as the factors already known.</blockquote>

<p>Ok again, no room there for special action. And the third thinker here, Langdon Gilkey (still another theologian), says something similar, but I will pass. I will not read that one in the interest of saving a little bit of time, but these three theologians, plus many others want to assert that there is something wrong with the idea of God acting in the world, acting in the world in a way that goes beyond creation and sustaining, or creation and holding things in existence. So they think, “Ok, God created the world; God sustains it in existence”…that is ok with them, but anything beyond that, God performing any miracles, raising Jesus from the dead, or for that matter working in somebody’s heart and mind in a special way, that, they say, is a real problem.  The question is, what is the problem?</p>

<p>Well, the next little bit here…according to the Christian and theistic idea, God is a person; he has knowledge, loves, and hates. He has aims and ends. He acts on the basis of his knowledge to achieve his ends. He is all-powerful, all-knowing, and wholly good. Thirdly (noted above by the Heidelberg catechism), God has created the world. Fourth is God conserves and sustains and maintains in being this world he created, but fifth, at least sometimes, God acts in a way going beyond creation and conservation in miracles, but also in his providential guiding of history, his working in the hearts of people, his internal instigation of the Holy Spirit, and so on, and it is with that fifth category that these people have a problem. It is God’s special action in the world—action beyond conservation and creation—and miracles would be an example.</p>

<p>So we might think of these theologians as endorsing what we could call hands off theology. God has got to keep his hands off. God could create the world. God conserves the world, sustains it in being, but he can’t do anything else—that is as far as he could go. It is hands off theology, and Bultmann, even in this context, even talks about interfering. I mean if God did something in the world that would be interfering, which, when you think about it, is a sort of strange thing to say—I mean if God created the world, he is the omnipotent, omniscient, holy, good creator of the world—when you accuse someone of interfering, you are saying they are doing something they should not be doing, right?</p>

<p>So Bultmann thinks if God did something in the world that would be interfering, and he should be ashamed of himself. Ok, now why is this a problem? Their suggestion is that somehow it is contrary to science. It is contrary to science the suggestion that God acts specially in the world. I didn’t read that bit, but Gilkey says, "The causal nexus in space and time which the enlightenment science and philosophy introduced into the western mind is also assumed by modern theologians and scholars. Since they participate in the modern world of science, both intellectually and existentially, they can scarcely do anything else.”</p>

<p class="intro">From a presentation sponsored by Biola University’s <a href="http://cct.biola.edu/" target="_blank">Center for Christian Thought</a>, and delivered February 12, 2012 at EV Free Church, Fullerton, CA.  Used by permission.</p>]]></content:encoded>
        <pubDate>Tue, 04 Sep 12 04:00:33 -0700</pubDate>
        <dc:creator>Alvin Plantinga</dc:creator>
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        <title>Being Human (Infographic)</title>
        <link>http://biologos.org/blog/being&#45;human&#45;infographic?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/being&#45;human&#45;infographic?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>The BioLogos Forum is pleased to present this infographic about the current anthropological understanding of human evolution, which takes into account research into both physiological and cultural developments among our ancient ancestors.</description>
        <content:encoded><![CDATA[<a href="http://biologos.org/uploads/static-content/Human-Evolution-Infograpic_full.png"><img src="http://biologos.org/uploads/static-content/Human-Evolution-Infograpic_570.png" alt="" height="1008" width="570"  /></a>
<p><strong>(Click Image for Full Resolution)</strong></p>]]></content:encoded>
        <pubDate>Mon, 30 Jul 12 10:06:50 -0700</pubDate>
        <dc:creator></dc:creator>
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        <title>Hominids Lived Millions of Years Ago, but How Can We Tell? (Videocast)</title>
        <link>http://biologos.org/blog/hominids&#45;videocast?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/hominids&#45;videocast?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>This BioLogos videocast addresses the age of recently discovered hominid fossils and how scientists are able to obtain those dates.</description>
        <content:encoded><![CDATA[<p>Today we present the fifth entry in our on-going BioLogos videocast series. The latest episode addresses the age of recently discovered hominid fossils and how scientists are able to obtain those dates. The script was written by biology student Joy Walters, with help from BioLogos president Darrel Falk.</p>

<p>For more, be sure to read our FAQs <a href="http://biologos.org/questions/ages-of-the-earth-and-universe">How are the ages of the Earth and universe calculated?</a> and <a href="http://biologos.org/questions/what-scientific-evidence-do-we-have-about-the-first-humans">What scientific evidence do we have about the first humans?</a>, as well as our recent infographic <a href="http://biologos.org/blog/how-do-we-know-the-earth-is-old-infographic">How Do We Know the Earth is Old?</a>.</p>

<h3>Author's Note from Joy Walters</h3>
<p>As I mentioned in my first post, I grew up skeptical of the whole idea of evolution. One contributor to my disbelief was the lengthy timescale for the “tree of life” that was presented with the theory. I would hear, for example, that dinosaurs lived hundreds of millions of years ago, but there was no explanation of why this was true; it was just given as a fact. No one explained the methods of dating, and so I thought biologists simply estimated the ages of species to fit their preconceived notions of how long it would take for one species to emerge from another. It also seemed like the ages were periodically revised and extended farther back in time, and I figured scientists needed to manipulate numbers to make evolution plausible. This, in my mind, made the theory both unbelievable and dismissible.</p>

<p>Once I learned about the techniques used to date fossils, I realized that my first impressions were wrong; the ancient ages of species are scientific determinations rather than scholarly conjectures. However, I have found in recent conversations that Christians remain skeptical of old ages and the evolutionary time scale. For this reason, I wanted the videocast to address the process of fossil dating (what the methods are and why they are accurate) while focusing on cases where hominid fossils were discovered and dated using these very methods. My hope is that Believers would be informed about the evidence for human evolution and its scientific grounding.</p>]]></content:encoded>
        <pubDate>Thu, 26 Jul 12 05:00:03 -0700</pubDate>
        <dc:creator>Joy Walters</dc:creator>
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        <title>What scientific evidence do we have about the first humans?</title>
        <link>http://biologos.org/questions/what&#45;scientific&#45;evidence&#45;do&#45;we&#45;have&#45;about&#45;the&#45;first&#45;humans?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/questions/what&#45;scientific&#45;evidence&#45;do&#45;we&#45;have&#45;about&#45;the&#45;first&#45;humans?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In recent decades, scientists have discovered more about the beginnings of humanity.  The fossil record shows a gradual transition over 5 million years ago from chimpanzee&#45;size creatures to hominids with larger brains who walked on two legs.   Later hominids used fire and stone tools and had brains as large as modern humans.  Fossils of homo sapiens in east Africa date back nearly 200,000 years.  Humans developed hearths for fire, stone points for spears and arrows, and cave paintings by 30,000 years ago.   By 10,000 years ago, humans had spread throughout the globe.   Genetic studies support the same picture.  Humans share more DNA with chimpanzees than with any other animal, suggesting that humans and chimps share a relatively recent common ancestor.  Also, the same defective genes appear in both humans and chimps, at the same locations in the genome—an observation difficult to explain except by common ancestry. Genetics also tells us that the human population today descended from more than two people. Evolution happens not to individuals but to populations, and the amount of genetic diversity in the gene pool today suggests that the human population was never smaller than several thousand individuals.  Yet all humans, of all races, are descended from this group.  Humanity is one family.</description>
        <content:encoded><![CDATA[<em>Coming Soon</em>]]></content:encoded>
        <pubDate>Thu, 12 Jul 12 14:34:24 -0700</pubDate>
        <dc:creator></dc:creator>
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        <title>Naming &apos;the God Particle&apos;</title>
        <link>http://biologos.org/blog/naming&#45;the&#45;god&#45;particle?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/naming&#45;the&#45;god&#45;particle?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>The discovery of the Higgs boson would certainly be a breakthrough for particle physics and cosmology, but would such a finding also radically redefine theology’s understanding of God or challenge the existence of such a deity?  Is there actually any theological or religious significance in Higgs physics at all?</description>
        <content:encoded><![CDATA[<p class="date"> The image above describes an "event" (proton-proton collision) recorded in 2012 with the CMS detector at CERN's Large Hadron Collider. According to CERN, "the event shows characteristics expected from the decay of the SM Higgs boson to a pair of Z bosons, one of which subsequently decays to a pair of electrons (green lines and green towers) and the other Z decays to a pair of muons (red lines). The event could also be due to known standard model background processes. ATLAS Experiment © 2012 CERN </p>


<p>Judging from the flurry of headlines over the past week, one might be tempted to think that proof positive of God’s existence (or lack thereof) had just appeared out of a 27-km-tunnel buried beneath the Swiss-French border. This frenzy of news headlines and blog titles hailed the recent news that CERN’s Large Hadron Collider has discovered a brand new particle of a mass of 125-126 GeV, which is assumed to be the Higgs boson, or the so-called “God particle.” The discovery of the Higgs boson would certainly be a breakthrough for particle physics and cosmology, but would such a finding also radically redefine theology’s understanding of God or challenge the existence of such a deity?  Is there actually any theological or religious significance in Higgs physics at all?</p>

<p>The short answer is “no,” which becomes apparent when one considers the widely-reported story of how it got named. In 1993, Nobel Laureate physicist Leon Lederman, along with science writer Dick Teresi, wrote a book detailing the history of particle physics starting with Pre-Socratic Greek philosophy Democritus and culminating with the hunt for the Higgs boson. Until this latest discovery, the Higgs boson was the elusive final missing piece of the puzzle known as the Standard Model—a collection of the fundamental particles that constitute our universe and the complex and mathematically-sophisticated relationships between them. Considering how incredibly difficult finding the Higgs boson was proving to be, Lederman wanted to name the book after that “goddamn particle,” according to some of his collaborators. His editor, however, would not allow it and so the name was shortened to “The God Particle: If the Universe Is the Answer, What is the Question?” And thus ‘the God particle’ was born, carrying with it more than enough social baggage for such a miniscule particle.</p>

<img src="http://biologos.org/uploads/static-content/Zosia_Krusberg.jpg" alt="" height="340" width="250" style="float:right;margin:0px 0px 0px 10px;"  />

<p>Particle physicist Dr. Zosia Krusberg (at right) is visiting assistant professor of physics and astronomy at Vassar College and thinks “the term ‘god particle’ is unfortunate. The Higgs boson is no more (or less) divine or spiritually significant than any other elementary particle within the standard model of particle physics.” It may be fundamental to explaining one of the most basic characteristics of the universe—namely the existence of matter and mass in addition to energy—but “it is no more (or less) important than any other physics principle underlying the Standard Model.” </p> 

<p>Last week’s discovery was monumental in that it may have finally provided experimental evidence for the Higgs Mechanism and defined the specific energy of the resulting Higgs boson, but even this “breakthrough” for particle physics leaves many scientific questions unresolved. Finding the Higgs boson completes the Standard Model, but it does not do away with many other questions and shortcomings of the current state of particle physics, such as the constituent particles of dark matter, a quantum theory of gravity, and other “mathematically subtle problems.” Not to mention that there is still significant work to be done to determine the exact nature of this newly-found particle. According to Dr. Krusberg, this particle might behave just as the Standard Model predicts or it could instead be “a Higgs-like particle that will serve as a gateway into explorations of physics beyond the Standard Model." Krusberg continued, “And I guarantee that it is this latter scenario that most of us are hoping for: physicists love nothing more than discovering the shortcomings of their theories, since this is the first step toward more fundamental theories with even more predictive power!”</p>

<p>No, finding the Higgs boson does not answer all the questions of particle physics, much less lend insight into the existence (or not) of God.  For that reason, Dr. Krusberg (like most physicists) bemoans the term ‘God particle’ and insists, “There really is nothing either literally or metaphorically god-like about the Higgs boson.”  Indeed, one writer for the British journal The Guardian reached such a point of frustration about the name that he ran a <a href="http://www.guardian.co.uk/science/blog/2009/jun/05/cern-lhc-god-particle-higgs-boson ">competition for alternatives</a>. The winner was “the champagne flute boson,” ostensibly because the bottom of a champagne bottle is an excellent and oft-used demonstration of the energy potential of the Higgs Mechanism. Or then again, perhaps it is simply because physicists thought that finally finding this shy particle would call for some of the bubbly.</p>

<p>On the other hand, some science writers and scientists can appreciate the ‘educational benefits’ of such a mysterious and controversial name because it attracts the attention of the general public and puts a relatable face on an extremely esoteric physics concept. Krusberg herself admits that “People are naturally drawn to the mysterious and the controversial, providing educators with great teaching opportunities.” But she worries about the larger social implications involved in “mixing the vernacular of physics and spirituality,” not least because such uncritical mixing can lead the non-scientific community to draw conclusions about the authority and reach of science that are not justified.</p>

<p>Understanding that the Higgs boson is not the literal stuff of God and that it does not prove or disprove God’s existence (as the name seems to suggest) extinguishes the fire under any sort of religious outcry. But this does not mean that its discovery is irrelevant to the discussion of science and faith, nor to the Christian community as a whole. As Dr. Krusberg remarks, “The recent discovery of [this] new boson at the LHC perfectly embodies the scientific process at its best (and thereby illustrates to the public why and how science works).” Scientific exploration of nature is not a fool-proof endeavor; healthy skepticism and accountability to a wide community of other researchers are absolutely critical to its success. But such evidence of the power and finesse of well-executed science as we saw last week is a testament to our ability to explore and understand the ‘how’ of the universe. God has equipped humanity with the desire, the intellectual abilities, and the collective will to recognize and explore the cosmic order and beauty of his creation. God has made our home knowable, and has given us the tools and capacities by which to know it.</p>

<img src="http://biologos.org/uploads/static-content/Tucker_Higgs_2_sm.jpg" alt="" height="194" width="300" style="float:left;margin:0px 10px 0px 0px;" />

<p class="date"> At left, Cern researchers present their findings to a few hundred of their colleagues in Melbourne, Australia.  Image © 2012 CERN </p>

<p>It is valuable, then, for the Christian community to understand and appreciate how science works, in part to recognize that there are many instances in which science and the church work in tandem in order to better understand and better serve the world. But I think there is something else we can draw from the story of the Higgs boson, too. The nickname ‘the God particle’ has touched nerves in religious communities because it implies that science has the ability to prove or disprove divine existence by physical means.  Even though the physics community is by no means claiming insight into the divine, it is sometimes assumed by the religious community that scientists view their work as chipping away at God’s existence when they begin to understand something that was previously unknown, or known only “by faith” in esoteric theories and models.</p>

<p>And yet, regardless of motives or metaphysical interpretations, perhaps physicists' search for the Higgs boson <em> is in fact</em> an apt picture of our own search for God.  How many times have we stared up at the starry ceiling in times of crisis and prayed fervently for some kind of sign from God to assure us of his presence? And how many times has that much-desired evidence appeared only in retrospect, when we look back to see God’s hand faithfully and elegantly working in ways inscrutable at the time? It took a <em>community</em> of physicists to discern the presence of the Higgs boson. But even so, they could only do so after the fact from the cascade of particle decays it sparked; they could not observe the particle itself directly. In a similar way, though we often do not see the working of God directly, “in the moment,” we still trust in his presence and providence, often depending on friends, family and the community of the church to help us see his hand in hindsight.  </p>

<p>So while the discovery of the Higgs boson does not itself explain God, we rejoice at the subtle yet striking new insight we have into God’s creative genius via the Higgs boson and at the way God gives evidence of his faithfulness in the ordered creation itself. Perhaps, however, the greatest insight we can glean from this breakthrough is an analogy for the way God calls us to seek him and find him together, in the community of those who follow his son.</p>

<p class="intro"> Tomorrow, Baylor University physicist Gerald Cleaver answers the question, "What <em>is </em>the Higgs boson?"</p><br> </br>

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        <pubDate>Tue, 10 Jul 12 09:02:29 -0700</pubDate>
        <dc:creator>Faith Tucker</dc:creator>
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        <title>What is Scientism?</title>
        <link>http://biologos.org/blog/what&#45;is&#45;scientism?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/what&#45;is&#45;scientism?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>Scientism is a rather strange word, but for reasons that we shall see, a useful one. Though this term has been coined rather recently, it is associated with many other “isms” with long and turbulent histories: materialism, naturalism, reductionism, empiricism, and positivism.</description>
        <content:encoded><![CDATA[<img src="http://biologos.org/uploads/static-content/SaintSimonResized.jpg" alt="" height="224" width="161" style="float:left; margin:0px 10px 0px 0px;"/><p>&nbsp;</p><p>&nbsp;</p>
<blockquote>A scientist, my dear friends, is a man who foresees; it is because science provides the means to predict that it is useful, and the scientists are superior to all other men. --Henri de Saint-Simon<sup>1</sup></blockquote>
<p>&nbsp;</p><p>&nbsp;</p><p>&nbsp;</p>

<p>Scientism is a rather strange word, but for reasons that we shall see, a useful one. Though this term has been coined rather recently, it is associated with many other “isms” with long and turbulent histories: materialism, naturalism, reductionism, empiricism, and positivism. Rather than tangle with each of these concepts separately, we’ll begin with a working definition of scientism and proceed from there.</p>

<p>Historian Richard G. Olson defines scientism as “efforts to extend scientific ideas, methods, practices, and attitudes to matters of human social and political concern.” <sup>2</sup>  But this formulation is so broad as to render it virtually useless. Philosopher Tom Sorell offers a more precise definition: “Scientism is a matter of putting too high a value on natural science in comparison with other branches of learning or culture.” <sup>3</sup>  MIT physicist Ian Hutchinson offers a closely related version, but more extreme: “Science, modeled on the natural sciences, is the only source of real knowledge.” <sup>4</sup>  The latter two definitions are far more precise and will better help us evaluate scientism’s merit.</p>

<h3>A History of Scientism</h3>

<p>The roots of scientism extend as far back as early 17th century Europe, an era that came to be known as the Scientific Revolution. Up to that point, most scholars had been highly deferential to intellectual tradition, largely a combination of Judeo-Christian scripture and ancient Greek philosophy. But a torrent of new learning during the late Renaissance began to challenge the authority of the ancients, and long-established intellectual foundations began to crack. The Englishman Francis Bacon, the Frenchman Rene Descartes, and the Italian Galileo Galilei spearheaded an international movement proclaiming a new foundation for learning, one that involved careful scrutiny of nature instead of analysis of ancient texts.</p>

<img src="http://biologos.org/uploads/static-content/descartesresized.jpg" alt="" height="252" width="204" style="float:right; margin:0px 0px 0px 10px;" /><p>Descartes and Bacon used particularly strong rhetoric to carve out space for their new methods. They claimed that by learning how the physical world worked, we could become “masters and possessors of nature.” <sup>5</sup> In doing so, humans could overcome hunger through innovations in agriculture, eliminate disease through medical research, and dramatically improve overall quality of life through technology and industry. Ultimately, science would save humans from unnecessary suffering and their self-destructive tendencies. And it promised to achieve these goals in this world, not the afterlife. It was a bold, prophetic vision.</p>

<p>As this new method found great success, the specter of scientism began to emerge. Both Bacon and Descartes elevated the use of reason and logic by denigrating other human faculties such as creativity, memory, and imagination. Bacon’s classification of learning demoted poetry and history to second-class status.<sup>6</sup> Descartes’ rendering of the entire universe as a giant machine left little room for the arts or other forms of human expression. In one sense, the rhetoric of these visionaries opened great new vistas for intellectual inquiry. But on the other hand, it proposed a vastly narrower range of which human activities were considered worthwhile.</p>

<h4>The Enlightenment</h4>

<p>A century later, many of the Enlightenment intellectuals continued their love-affair with the power of natural science. They claimed that not only could science enhance the quality of human life, it could even promote moral improvement. The Encyclopedist Denis Diderot aimed to collect, organize, and preserve all human knowledge so that “our children, becoming better instructed, may become at the same time more virtuous and happy.” <sup>7</sup> Many of the French philosophes even claimed that science could be a substitute for religion. In fact, during the French Revolution, numerous Catholic churches were converted into “Temples of Reason” and held quasi-religious services for the worship of science.<sup>8</sup></p>

<h4>Positivism</h4>

<p>The 19th century witnessed the most powerful and enduring formulation of scientism, a system called positivism. Its founder was August Comte, who built his positive philosophy from a deep commitment to David Hume’s empiricism and skepticism. Comte claimed that the only valid data is acquired through the senses. Nothing was transcendent, and nothing metaphysical could have any claim to validity.<sup>9</sup> The task of scientists was twofold—first, to demonstrate how all phenomena, including human behavior, are subject to invariable natural laws.<sup>10</sup> Second, they would reduce these natural laws to the smallest possible number, and ultimately unify them under the laws of physics.<sup>11</sup></p>

<p>Comte also subsumed all of human intellectual history into a single process which he called the Law of Three Stages. In his view, each branch of knowledge passes through three stages: the theological or fictitious, the metaphysical or abstract, and lastly the scientific or positive state. He believed that through the continual advancement of human understanding, religion would fade away, philosophy and the humanities would be transformed into a naturalistic basis, and all human knowledge would eventually become a product of science. Any ideas outside that realm would be pure fantasy or superstition.</p>

<h4>Logical Positivism</h4>

<img src="http://biologos.org/uploads/static-content/ruler2.jpg" alt="" height="188" width="250" style="float:left;margin:0px 10px 0px 0px;" /><p>Positivism did not lose its appeal in the 20th century. To the contrary, a group known collectively as The Vienna Circle reinvigorated the fundamental tenets of positivism with enhanced symbolic logic and semantic theory. They called their approach, fittingly, logical positivism. In this system, there are only two kinds of meaningful statements: analytic statements (including logic and mathematics), and empirical statements, subject to experimental verification. Anything outside of this framework is an empty concept.<sup>12</sup></p>

<p>Given its sweeping claims, logical positivism came under heavy scrutiny. Karl Popper pointed out that few statements in science can actually be completely verified. However, a single observation has the potential to invalidate a hypothesis, and even an entire theory. Therefore, he proposed that instead of experimental verification, the principle of falsifiability should demarcate what qualified as science, and by extension, what can qualify as knowledge.<sup>13</sup></p>

<p>Another weakness of the positivist position is its reliance on a complete distinction between theory and observation. Observations, essential to the empirical approach of science, were claimed by positivists to be brute facts which one could use to establish, evaluate, and compare the theories. However, W.O. Quine pointed out in his “Two Dogmas of Empiricism” that observations themselves are partly shaped by theory (“theory-laden”).<sup>14</sup> What counts as an observation, how to construct an experiment, and what data you think your instruments are collecting—all require an interpretive theoretical framework. This realization does not deal a death-blow to the practice of science (as some post-modernists like to claim), but it does undermine the positivist claim that science rests entirely on facts, and is thus an indisputable foundation for knowledge.</p>

<h3>Scientism of Today</h3>

<p>Scientism today is alive and well, as evidenced by the statements of our celebrity scientists:</p>

<img src="http://biologos.org/uploads/static-content/nasa_resized.jpg" alt="" height="263" width="264" style="float:right;margin:0px 0px 0px 10px;" />
<blockquote>The Cosmos is all that is or ever was or ever will be. –Carl Sagan, Cosmos<br /><br />

The more the universe seems comprehensible, the more it also seems pointless. –Stephen Weinburg, The First Three Minutes<br /><br />

We can be proud as a species because, having discovered that we are alone, we owe the gods very little. –E.O. Wilson, Consilience</blockquote>

<p>While these men are certainly entitled to their personal opinions and the freedom to express them, the fact that they make such bold claims in their popular science literature blurs the line between solid, evidence-based science, and rampant philosophical speculation. Whether one agrees with the sentiments of these scientists or not, the result of these public pronouncements has served to alienate a large segment of American society. And that is a serious problem, since scientific research relies heavily upon public support for its funding, and environmental policy is shaped by lawmakers who listen to their constituents. From a purely pragmatic standpoint, it would be wise to try a different approach.</p>

<p>Physicist Ian Hutchinson offers an insightful metaphor for the current controversies over science:</p>

<blockquote>The health of science is in fact jeopardized by scientism, not promoted by it. At the very least, scientism provokes a defensive, immunological, aggressive response from other intellectual communities, in return for its own arrogance and intellectual bullyism. It taints science itself by association.<sup>15</sup></blockquote>

<p>Noting that most Americans enthusiastically welcome scientific advancements, particularly those in health care, transportation, and communications, Hutchinson suggests that perhaps what the public is rejecting is not actually science itself, but a worldview that closely aligns itself with science—scientism.<sup>16</sup> By disentangling these two concepts, we have a much better chance for enlisting public support for scientific research than we would by trying to convince millions of people to embrace a materialistic, godless universe in which science is our only remaining hope.</p>

<h3>Distinguishing science from scientism</h3>

<p>So if science is distinct from scientism, what is it? Science is an activity that seeks to explore the natural world using well-established, clearly-delineated methods. Given the complexity of the universe, from the very big to very small, from inorganic to organic, there is a vast array of scientific disciplines, each with its own specific techniques. The number of different specializations is constantly increasing, leading to more questions and areas of exploration than ever before. Science expands our understanding, rather than limiting it.</p>

<img src="http://biologos.org/uploads/static-content/Gears_large.jpg" alt="" height="340" width="250" style="float:left;margin:0px 10px 0px 0px;" /><p>Scientism, on the other hand, is a speculative worldview about the ultimate reality of the universe and its meaning. Despite the fact that there are millions of species on our planet, scientism focuses an inordinate amount of its attention on human behavior and beliefs. Rather than working within carefully constructed boundaries and methodologies established by researchers, it broadly generalizes entire fields of academic expertise and dismisses many of them as inferior. With scientism, you will regularly hear explanations that rely on words like “merely”, “only”, “simply”, or “nothing more than”. Scientism restricts human inquiry.</p>

<p>It is one thing to celebrate science for its achievements and remarkable ability to explain a wide variety of phenomena in the natural world. But to claim there is nothing knowable outside the scope of science would be similar to a successful fisherman saying that whatever he can't catch in his nets does not exist.<sup>17</sup> Once you accept that science is the only source of human knowledge, you have adopted a philosophical position (scientism) that cannot be verified, or falsified, by science itself. It is, in a word, unscientific.</p>

 <h3>Notes</h3>

<p class="date">1. "<em>Un savant, mes amis, est un homme qui prévoit; c’est par la raison que la science donne le moyen de prédire qu’elle est utile, et que les savants sont supérieurs à tous les autres hommes.</em>"  Translated into English by Valence Ionescu in <em>The Political Thought of Saint-Simon</em>. Oxford University Press, 1976.  Page 76<br>

2. Olson, Richard G. <em>Science and Scientism in Nineteenth-Century Europe</em>. Urbana, University of Illinois Press, 2008.<br>

3. Sorell, Tom. <em>Scientism: Philosophy and the Infatuation with Science</em>. New York: Routledge, 1991.<br>

4. Hutchinson, Ian. <em>Monopolizing Knowledge: A Scientist Refutes Religion-Denying, Reason-Destroying Scientism</em>. Belmont, MA: Fias Publishing, 2011.<br>

5. Descartes, Rene. <em>Discourse on Method</em><br>

6. Sorell, p176<br>

7. Sorell, p35<br>

8. Ozouf, Mona. <em>Festivals and the French Revolution</em>. Harvard University Press, 1988.<br>

9. Zammito, John H. A Nice Derangement of Epistemes : Post-Positivism in the Study of Science from Quine to Latour. Chicago: University of Chicago Press, 2004.<br>

10. This view is a form of strict determinism, and current popularizers of continue to enthusiastically endorse it. Perhaps they are “determined” to do so?<br>

11. This view is a form of extreme reductionism, also widely endorsed by current popularizers of science.<br>

12. Zammito, p8<br>

13. Popper, Karl. <em>Logic of Scientific Discovery.</em> 1959<br>

14. For an extended discussion, read Zammito’s chapter “The Perils of Semantic Ascent: Quine and Post-positivism in the Philosophy of Science” in <em>A Nice Derangement of Epistemes</em>. University of Chicago Press, 2004.<br>

15. Hutchinson, p143<br>

16. Hutchinson, p109<br>

17. Giberson, Karl, and Mariano Artigas. <em>Oracles of Science: Celebrity Scientists Versus God and Religion</em>. Oxford: Oxford University Press, 2009.</p> ]]></content:encoded>
        <pubDate>Mon, 11 Jun 12 05:00:14 -0700</pubDate>
        <dc:creator>Thomas Burnett</dc:creator>
        <!--<dc:date>Jun 11, 2012 05:00</dc:date>-->
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        <title>Adam&apos;s Dream</title>
        <link>http://biologos.org/blog/adams&#45;dream2?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/adams&#45;dream2?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>While the specific “how” of our being made into the image of God will probably always remain a mystery, the Bible and creeds are clear on the “why” of our creation: we were made to worship the Lord, and be in relation with Him and each other.</description>
        <content:encoded><![CDATA[<p>Discussion about Adam as the first divine "Image-bearer" often turns on the perceived conflict between scientific evidence contradicting belief in a single biological ancestor of all living human beings and Scriptural testimony that humans were made different from the rest of the creation: we have capacity to reflect the image of God.</p>

<p>Many posts on this Forum have suggested that the cosmological narrative in Genesis 1 is best read as being primarily about God’s identity and agency, rather than about the physical make-up or material history of the natural world.  Similarly, we demonstrate our highest regard for Genesis 2’s account of the creation of Eve—the second fully human being—by looking to its meaning in terms of spiritual and interpersonal relationships, rather than genetic ones.  While the specific “how” of our being made into the image of God will probably always remain a mystery, the Bible and creeds are clear on the “why” of our creation: we were made to worship the Lord, and be in relation with Him and each other.  That intimate, conscious and deeply symbolic knowledge of our maker and fellow human beings is a profound difference that sets us apart from the other creatures.</p>

<p>I have frequently argued that poets are often the most clear on some of the important issues of our faith, including this one.  Today we feature a work by Robert Siegel, who identifies the imagination as the faculty by which we recognize and name those spiritual relationships.  As he says, “It's the imagination, hence language and art, that establishes the connections”; it is the imagination that allows us to conceive of and name the links between ourselves and creation, ourselves and each other, ourselves and the Creator God.</p>

<p>Though we often focus on Adam’s naming of the animals, and then even of Eve, Siegel helps us remember that it was in <em>hearing</em> his own name that Adam’s whole humanity came into being: he experienced the richness of being called by God to bear His likeness, but also of being called to by one that was profoundly “like him.”  Put another way, we are speakers, but also equally hearers. May we, too, be awakened to ourselves and our image-bearing identity by a still, soft voice saying our name. May we, too, in gratitude and delight, call upon the name of the one, Jesus, who is both our God and our fellow man.</p>


<h3>“Adam’s Dream”</h3>
<p>by Robert Siegel</p>

<p><em>The Imagination may be compared to Adam's dream:<br />
he awoke and found it truth</em>. --Keats</p>

<p>He saw the garden spreading past the trees<br />
he'd been warned to avoid (yet keep a special eye on).<br />
He'd learned by scents, transported by the breeze,<br />
myriads of roses and how, by hand, the scion<br /><br />
of one to graft on another--and what was edible:<br />
whole families of legumes, grasses, roots,<br />
melons, peaches, apples, pears. Incredible,<br />
the variety of tastes just from the fruits!<br /><br />
But it wasn't enough. Even the breathing animals<br />
with friendly grunt or sigh, silken warm side,<br />
and large affectionate eye were not able<br />
to speak. When he named them, none replied:<br /><br />
His words fell dead on the air--though he said<br />
them everywhere, walking or running to each place:<br />
to the mountain, which echoed back the sounds he made,<br />
or the still pool, returning his own gaze.<br /><br />
But no one answered him until one night in a dream<br />
he woke and heard a soft voice speak his name.</p>

<p>“Adam’s Dream” first appeared in issue 3 of <a href="http://stonework03.blogspot.com/2005/11/stonework-issue-3.html" target="_blank">Stonework</a>, the literary journal of Houghton College. &copy; 2001 Robert Siegel</p><br> </br>

<p class="intro">Robert Siegel is the author of nine books of poetry and fiction, most recently <a href="http://www.amazon.com/gp/product/1557254303/ref=as_li_ss_tl?ie=UTF8&tag=thebiofou06-20&linkCode=as2&camp=217145&creative=399369&creativeASIN=1557254303">A Pentecost of Finches: New and Selected Poems</a><img src="http://www.assoc-amazon.com/e/ir?t=&l=as2&o=1&a=1557254303&camp=217145&creative=399369" width="1" height="1" border="0" alt="" style="border:none !important; margin:0px !important;" />. He has received prizes and awards from Poetry, Prairie Schooner, The Transatlantic Review, the Ingram Merrill Foundation, and the National Endowment for the Arts, and his poems have appeared in numerous journals and anthologies.  His fiction includes Alpha Centauri and the Whalesong trilogy, which received the Golden Archer and Matson awards.  With degrees from Wheaton, Johns Hopkins, and Harvard, Siegel has taught at Dartmouth, Princeton, and Goethe University in Frankfurt, and for twenty-three years at the University of Wisconsin-Milwaukee, where he directed the graduate creative writing program and is currently professor emeritus of English. He is married to Ann Hill Siegel, a photographer, and lives on the coast of Maine.</p><b></br>]]></content:encoded>
        <pubDate>Sun, 20 May 12 05:39:50 -0700</pubDate>
        <dc:creator>Mark Sprinkle</dc:creator>
        <!--<dc:date>May 20, 2012 05:39</dc:date>-->
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        <title>A Biologist&apos;s Perspective</title>
        <link>http://biologos.org/blog/a&#45;biologists&#45;perspective?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/a&#45;biologists&#45;perspective?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In today&apos;s video, Dr. David Finch, a biologist at New York University, discusses his thoughts on both Creationism and the effects of &quot;new atheists&quot; like Richard Dawkins.</description>
        <content:encoded><![CDATA[<p>In today's video, Dr. David Finch, a biologist at New York University, discusses his thoughts on both Creationism and the effects of "new atheists" like Richard Dawkins. Finch voices his frustration that many "seekers of truth" ignore the scientific truth of evolution. He asserts that while Darwin was right about natural selection and the patterns of evolution, he was wrong in regards to genetics--the central mechanism by which biological change occurs. However, evolutionary science did not stop with Darwin, and modern science has made a lot of progress towards understanding how genes work in light of evolution.</p>

<p>Ultimately, however, Finch remarks that "science can neither prove nor disprove the existence of God." To him, those who proselytize atheism under the banner of "science" do a disservice to science. The goal of scientists is to understand the physical world around us, and most scientists go into their labs to discover something wonderful about the world, rather than to comment on the existence of God.</p>]]></content:encoded>
        <pubDate>Thu, 29 Mar 12 07:56:30 -0700</pubDate>
        <dc:creator>David Fitch</dc:creator>
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        <title>Monopolizing Knowledge, Part 1: Science and Scientism</title>
        <link>http://biologos.org/blog/monopolizing&#45;knowledge&#45;part&#45;1&#45;science&#45;and&#45;scientism?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</link>
        <guid>http://biologos.org/blog/monopolizing&#45;knowledge&#45;part&#45;1&#45;science&#45;and&#45;scientism?utm_source=RSS_Feed&amp;utm_medium=RSS&amp;utm_campaign=RSS_Syndication</guid>
        <description>In his new book Monopolizing Knowledge, physicist Ian Hutchinson engages with the world&#45;view he calls “scientism”: “the belief that science, modeled on the natural sciences, is the only source of real knowledge”.</description>
        <content:encoded><![CDATA[<p class="intro">“Science is the most remarkable and powerful cultural artifact humankind has ever created. What is more, most people in our society regard science as providing us with knowledge about the natural world that has an unsurpassed claim to reality and truth. That is one reason why I am proud to be a physicist, a part of the scientific enterprise. But increasingly I am dismayed that science is being twisted into something other than what it truly is. It is portrayed as identical to a philosophical doctrine that I call “scientism”. Scientism says, or at least implicitly assumes, that rational knowledge is scientific, and everything else that claims that status of knowledge is just superstition, irrationality, emotion, or nonsense.” (Monopolizing Knowledge, page 1)<br /><br />
In his new book <em><a href="http://www.amazon.com/gp/product/0983702306/ref=as_li_ss_tl?ie=UTF8&tag=thebiofou06-20&linkCode=as2&camp=1789&creative=390957&creativeASIN=0983702306">Monopolizing Knowledge</a><img src="http://www.assoc-amazon.com/e/ir?t=thebiofou06-20&l=as2&o=1&a=0983702306" width="1" height="1" border="0" alt="" style="border:none !important; margin:0px !important;" /></em> (available for purchase now), physicist Ian Hutchinson engages with the world-view he calls “scientism”: “the belief that science, modeled on the natural sciences, is the only source of real knowledge” (page vii). In Hutchinson’s eyes, this erroneous world-view is at least indirectly responsible for the apparent friction between science and religion that many see today. In this series (taken from the larger book, which engages the topic in a much fuller and deeper fashion), Hutchinson will attempt to both explain and dismantle “scientism” by examining both what we mean when we say “science”, and how the scientistic worldview oversteps this definition and becomes a philosophical and metaphysical framework. We begin the series with a brief look at the origins of scientism.</p>

<h3>Science and Scientism</h3>

<p>One of the most visible conflicts in current culture is between  “scientism” and religion. Because religious knowledge differs from scientific knowledge, scientism claims (or at least assumes) that it must therefore be inferior. However, there are many other important beliefs, secular as well as religious, which are justified and rational, but not scientific, and therefore marginalized by scientism. And if that is so, then scientism is a ghastly intellectual mistake.</p>

<p>But how could it have come about that this mistake is so widespread, if it is a mistake? The underlying reason is that scientism is confused with science. It is natural for readers without inside knowledge of science to assume that science and scientism are one and the same when many leading scientists and science popularizers often speak and act as if they and thus directly promote this confusion. What is more, several major strands within religion also promote this confusion. On the conservative theological wing, science is often rejected because it is confused with scientism, and on the theologically liberal wing scientism is often adopted for the same reason. Whether rejecting or assimilating, religious believers often confuse science and scientism.</p>

<p>Scientism is, first of all, a philosophy of knowledge. It is an opinion about the way that knowledge can be obtained and justified. However, scientism rapidly becomes much more. It becomes an all-encompassing world-view; a perspective from which all of the questions of life are examined: a grounding presupposition or set of presuppositions which provides the framework by which the world is to be understood. In other words, it is essentially a religious position.</p>

<h3>The Origins of Scientism</h3>

<p>The word science is used with two completely different meanings; confusing the two has a natural tendency to lead to scientism. The historical meaning comes from the word's Latin root, <em>scientia</em>, which means simply knowledge, and indeed the word science was once used to describe <em>any</em> systematic orderly study of a field of knowledge. In today’s common usage, however, "science" refers to the study of the natural world. The "Encyclopédie" (1751-) of Diderot and D'Alembert<sup>1</sup>, a classic embodiment of Enlightenment thought, defines the word science to mean knowledge in general, but then focuses on natural science and technology. This is scientism in its youth. Enlightenment writings helped to insinuate scientism as an unacknowledged presupposition into much of the intellectual climate of the succeeding two centuries. From Samuel Johnson's Dictionary (1755), through historians such as Thomas Babington Macaulay (1848), and in vestiges even into the mid twentieth century, "science" was held to refer generally to formal, intellectual learning, yet when specific examples of science are cited these are almost all <em>natural</em> science.</p>

<p>Edward Cheney used his preface to the 1898 edition of Macaulay's history<sup>2</sup> to criticize him as failing to "treat history as a science". Cheney's attitude is rife with scientism - trying to distinguish between `true' scientific historical knowledge on the one hand, and on the other, literature that fails to qualify as science and hence as true knowledge. As president of the American Historical Society, twenty seven years later, Cheney would champion an explicitly scientistic view of the historian's task as to discover law in history, “... natural laws, which we must accept whether we want to or not, ... laws to be accepted and reckoned with as much as the laws of gravitation, or of chemical affinity” <sup>3</sup> The view is not convincing. The supposed distinction between scientific and unscientific history bears no discernible relationship to the methods of the natural sciences. It is mostly a substitution of “scientific” for  "correct" for rhetorical effect.</p>

<p>The continued robustness of scientism is surely partly attributable to this terminological confusion. If science means simply knowledge, then scientism is merely tautologically true. End of story. But if science means a particular type of knowledge, as it does today, then it is essential to recognize that meaning and stick to it. In short what we mean by science today is the inheritance of the Scientific Revolution. In later parts of this series, I shall identify two key defining characteristics of science that encapsulate the two emphases crucial to its development: experimental or natural evidence, and mechanical or mathematical explanation. Before I move on to this task, though, let me pause to address some objections to the whole of my explanatory enterprise.</p>

<h3>A Few Possible Objections</h3>

<p>One objection that might be raised at this stage is to ask why one should restrict the designation science to the inheritors of the Scientific Revolution. After all, the argument goes, surely we should use whatever strategy is available to discover knowledge. My first answer is immediately to point out that this objection is an example of scientism. It confuses knowledge with science and implies that they are one and the same. I am not at all interested in limiting the ways of obtaining knowledge to those avenues that we call “scientific”. I simply want to be clear that, as a matter of historical fact, science as we commonly conceive it had, and has, a distinctive characteristic approach to methods of discovering and knowing. But why insist on this terminology? Here, my second answer is that science has a well-earned prestige and authority precisely because of its success. This prestige is, of course, one driving force behind the desire of many disciplines to be considered sciences. To use the metaphor of the market today, it is a question of "branding".</p>

<p>A second kind of objection is this: suppose we grant that we will use the word science to mean natural science. Doesn't that just mean the study of nature? So shouldn’t"the study of nature" be our working definition of science then? And if it is, why should one limit the scope of science by an identification of its methods? Surely one should use whatever methods are available to study nature.</p>

<p>My answer is this: the main problem with "the study of nature" as a definition of science is that it simply begs the question: what is nature? We tend to think that "nature" is self-evident; but it isn't. Prior to the Scientific Revolution, nature was populated with gods and teleological imperatives, with intention and purpose. Even in 1686, Robert Boyle (of Boyles' Law) identified eight different senses of the word nature<sup>4</sup>. Boyle's purpose was to deplore the use of, the semi-deity that underwrote Aristotle's physics, which the Scientific Revolution was in the process of superceding, and to replace it with the established order or settled course of things. Moreover, even after the Enlightenment, the romantics such as the poets William Wordsworth and Samuel Taylor Coleridge said that what they were about was the study of nature. Yet no one today would for a moment think to call the poetic understanding of the natural world science. It simply is not adequate to assume that what is meant by nature is obvious.</p>

<p>Instead, I believe, we must use a functional definition of science. Once we have a clear view of what science is, we will have a definition of what we here mean by nature. Nature is what we are studying in natural science. The result of this definition, as we'll see, is entirely consistent with what Boyle was arguing for: the established order or settled course of things.</p>

<p>We will continue this exploration of what we mean by “nature” in the next installment.</p>

<h3>Notes</h3>
<p class="date">1. Denis Diderot and Jean le Rond d'Alembert, editors. <em>Encyclopédie, ou dictionnaire raisonné des sciences, des arts et des métiers</em>. André Le Breton, Michel-Antoine David, Laurent Durand, and Antoine-Claude Briasson, Paris, 1751-77.<br />
2. Thomas Babbington (Lord) Macaulay. <em>The History of England from the accession of James the second.</em> G. P. Putnam, New York, 1898. <br />
3. Edward P. Cheyney. <a href=" http://www.historians.org/info/AHA_History/epcheyney.htm" target="_blank">Presidential address delivered before the american historical association</a>. <em>American Historical Review</em>, 29 (2): 231-48, 1924.<br />
4. Thomas Birch, editor. <em>Robert Boyle,, The Works</em>. Georg Olms Verlangsuchhandlung, Hildsheim, 1966. Volume 5, p167-9.</p>]]></content:encoded>
        <pubDate>Tue, 06 Dec 11 03:59:15 -0800</pubDate>
        <dc:creator>Ian Hutchinson</dc:creator>
        <!--<dc:date>Dec 06, 2011 03:59</dc:date>-->
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        <title>Dead Bones with a Living Message</title>
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        <description>In this video, Pääbo covers a lot of ground, noting several lines of genetic evidence for the evolution of modern humans from earlier hominids in Africa, as well as for the interbreeding between early humans and Neanderthals.</description>
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<p>As we noted in <a href="http://biologos.org/blog/biologos-and-the-june-2011-christianity-today-cover-story">our response</a> to the June article in <em>Christianity Today</em> “The Search for the Historical Adam,” the evidence for gradual creation is overwhelming, with more studies supporting the evolutionary process being published each year. We’ve looked at many of these evidences: from fossils, from comparative anatomy, from genetics. Today, we’d like to highlight for our readers a compelling video from the annual TED Conference featuring geneticist Svante Pääbo. You may remember Pääbo from his efforts to extract and sequence DNA from 30,000(+) year old Neanderthal bones (we mentioned his work <a href="http://biologos.org/blog/a-geneticists-journey">here</a>).</p>

<p>In this eighteen minute video, Pääbo covers a lot of ground, noting several lines of genetic evidence for the evolution of modern humans from earlier hominids in Africa, as well as for the interbreeding between early humans and Neanderthals. We’ve covered some of this data before, but it’s particularly compelling to hear it described by one of the scientists leading the field of study.</p>

<p>However, our goal at The BioLogos Foundation isn’t just to make the Church aware of the fascinating and convincing scientific evidence for gradual creation. As we have said <a href="http://biologos.org/blog/a-geneticists-journey">before</a>:</p>

<blockquote><p>BioLogos exists to help Christians think carefully about the ramifications of these new data in light of long-standing traditional ways of viewing human creation. We have some re-thinking to do, but it can be done and will be done within the context of a Christian faith that is fully orthodox and thoroughly evangelical. Any time we draw closer to truth, to God’s truth, we have nothing to fear. There is still much to learn, but we can look back at what we have learned with awe—absolute awe.</p></blockquote>

<p>It is truly amazing that we know so much now about our early days.  For example, Africans do not have DNA which is specifically derived from Neanderthals, whereas people in the rest of the world do carry a small amount.  This confirms the picture of human history derived from studying fossils.  Neanderthal bones have not been found in Africa, so it isn’t surprising that their DNA is not there either.  The fact that non-Africans have some of the DNA found in Neanderthal bones confirms that which geneticists knew from other studies: we have two distinct groups of human ancestors—those who left Africa in ancient times and those who stayed.</p>

<p>God chose to reveal himself and to begin working with a distinct sub-group of ancient  humans, those descended from Abraham and Sarah.   To Abraham, God made a marvelous promise.   Drawing his attention to the stars above, God said that someday Abraham’s descendents would outnumber the countable stars in the universe.  And so it came to be.  Indeed through our adoption into the family, we are all children of Abraham.  The God of Abraham is our God too and each one of us is one of those stars too numerous for Abraham to count.</p>

<p>Sometimes, it seems that we are uncomfortable with the notion that God made us through a gradual process that included apes in our family tree.  It is almost as though we would prefer dirt to apes.  Perhaps, in at least some cases, this is due to an inadequate appreciation for the fact that God loves, really loves, all of creation, not just us.  As special as we know we are, we can’t read Psalm 104, Genesis 1, Genesis 9 (where the covenant is not just with Noah but with all living creatures), or Job 38-41 without being reminded that <em>all</em> living creatures are God’s creation (see <a href="http://biologos.org/blog/creation-which-creation">here</a>).  The Neanderthals, the Denisovans, <em>Homo erectus</em>, and the australopithecines were God’s creation too!  Still, we modern humans have been singled out.  We’ve been <em>called</em> out.</p>

<p>True our family tree, as Pääbo shows here, is intriguing.  But let us never forget, that the most important thing about this tree is that God is the vine which exists at its core, and we are called to be the branches which bear fruit.  The fact that many of us have a small amount of Neanderthal DNA, some of us have Denisovan DNA, and others have neither is interesting, but it is really just a side issue for people of faith.  As a result of God’s visit to Abraham, followed eventually by God’s taking on flesh in the person of  Jesus of Nazareth, we can all know God as our heavenly Father.  We are children of God and as such, we are God’s representatives.  We are called to image God.  We are called to love God.  And we are called to love each other and to deeply respect all that he has made.</p>]]></content:encoded>
        <pubDate>Tue, 29 Nov 11 11:00:18 -0800</pubDate>
        <dc:creator>Darrel Falk, Mapes, Stephen</dc:creator>
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        <title>Series: Understanding Evolution</title>
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        <description>This blog series by Dennis Venema undertakes the task of clarifying numerous aspects of evolution that often become misconstrued by Christians. He first discusses the idea of speciation in a population over time, later applying it to the speciation process that occurred among hominids (human ancestors) which led to modern humans. He continues to support this idea by exploring so called “Mitochondrial Eve,”“Y Chromosome Adam” and other compositional clues of the human genome.</description>
        <content:encoded><![CDATA[<h3>Geographic isolation and reproductive barriers</h3>
<p>As we have seen, speciation (the events that lead to reproductive isolation between populations of organisms) can be a prolonged and complex process. Populations can become isolated geographically (e.g. through migration) and begin to accumulate genetic differences that may raise a barrier to reproduction between them. This barrier may only be a partial barrier, however. The stickleback populations we discussed previously are an example: the first event leading to speciation was physical separation when some marine fish colonized new freshwater habitats. Even after significant differences accumulated between the marine and freshwater forms, a second wave of colonization of fresh water by the marine form brought the two groups into contact again, leading to some genetic exchange even as the two groups remained largely distinct. At the point of the second colonization, whether one or two species is/are present is a point of discussion: the case can be made for either.  A scientist arguing for one species would point out that the two groups can still produce fertile offspring, whereas a colleague might argue for two based the distinct characteristics and ecological niches of the two populations, as well as the observation that the hybrids resulting from interbreeding are not as well adapted to either niche. The point is clear: speciation, as a slow process, is a <em>gradient</em>, and a clear line of demarcation cannot be drawn on a gradient. To return to our flip-book analogy, every adjacent page is only slightly different from the pages on either side. If we compare widely separated pages, the differences are clear. The point is that there is no single page in between them that we can identify as the point where the images “became different.”</p>

<p>While this discussion might seem a little academic and uninteresting (perhaps because one might discount such events as mere ‘microevolution’ of sticklebacks), we have recently learned that similar events shaped human speciation. As far as we can tell, sticklebacks are not aware of, nor concerned about, the theological implications of how they came to be, but we certainly are for our own species (and perhaps even for sticklebacks). What was once an area of interest mainly for specialists is about to become a topic of intense discussion among evangelicals: we have only recently learned that a portion of the lineage leading to modern humans interbred with other hominid species they encountered as they migrated out of Africa ~50,000 years ago. In order to explain what happened, let’s pick up the tale at an earlier point, around 450,000 years earlier.</p>

<h3>Out of Africa, twice over</h3>
<p>Somewhere between 500,000 and 300,000 years ago, the ancestors of the Neanderthals (<em>Homo neanderthalensis</em>) left Africa and migrated into the Middle East region, and from there on to Europe and parts of Asia. (Recall that human ancestors, at this point, are all still in Africa, and will stay put until around 50,000 years ago). Neanderthals persisted in the Middle East and Europe until ~30,000 years ago, meaning there was a time where the humans leaving Africa about 50,000 years ago could have interbred with them before they went extinct. This remained an open question until techniques improved to recover and sequence ancient DNA. It is now possible to obtain and sequence DNA from Neanderthal remains, and the complete genome sequence of Neanderthals was published in early 2010. The results were fascinating: DNA sequence comparisons between the two species indicates that modern, non-African humans have about 1-4% Neanderthal DNA in their genomes. This variation, however, is not present in sub-Saharan Africans, since they are descended from humans that did not leave Africa and and thereby, because of geographical separation, never had the opportunity to interbreed with Neanderthals. We also know that the group that left Africa went through a reduction in population size to a about  1200 individuals (a genetic bottleneck), whereas those that stayed behind maintained a larger  population size (about 6000) over the same period.</p>

<h3>New details</h3>
<p>In addition to this information, we have recently discovered a new hominid species from Asia, as Darrel Falk recently <a href="http://biologos.org/blog/a-geneticists-journey">highlighted</a> here on BioLogos. This species, named the “Denisovans” is known to us only from a few bone fragments and one molar, but - wonder of wonders in this age of paleogenomics - this was enough for us to determine its complete genome sequence. The results were, again, fascinating: the Denisovans are relative of Neanderthals that split off from them after their common ancestor left Africa. The Neanderthals went west to Europe, and the Denisovans colonized Asia (and evidence suggests they were quite widespread). Even more interesting is that comparing Denisovan and human DNA indicates that some humans (modern Melanesians) have about 5% Denisovan DNA in their genomes. This variation is not found in Europeans or Africans.</p>

<h3>Putting the story together</h3>
<p>Assembling all of this information reveals the following tale: the common ancestor of Neanderthals and Denisovans migrated from Africa to the Middle East between 500,000 and 300,000 years ago, leaving a population behind that would eventually become modern humans (at around 200,000 years ago). In the Middle East, the populations destined to become Neanderthals and Denisovans part ways, with their differences accumulating over the next several hundred thousand years to make them distinct species. When a population of modern humans leave Africa around 50,000 years ago, they encounter, and breed with, Neanderthals shortly after. This genetic exchange is small, since there are partial reproductive barriers in place, but a small fraction of Neanderthal DNA becomes established in this lineage. Groups from this population then part ways, with some migrating into Europe and others into Asia. This latter group then encounters the Denisovan hominids, interbreeds with them, and a fraction of Denisovan DNA takes hold as a result. This population goes on to colonize southeast Asia, Oceania and Australia, where we see this variation today in Melanesians.  Modern humans thus have different evolutionary trajectories: Melanesians have both Neanderthals and Denisovans in their lineage, Europeans have Neanderthals, and Africans have neither.</p>

<h3>New data, new questions</h3>
<p>Even as I stand amazed in what God has revealed to us about our origins through science,  I know that this new information will be difficult for some within the evangelical community to accept. Moreover, it is almost certain that some Christian groups, unfortunately, will misrepresent this data to their constituents (whether intentionally or not), and thus spread confusion that hinders the needed theological conversation. Still, I have reason for hope: God has seen it fit to reveal this information to us, and that suggests that He believes the evangelical Christian community is ready for this conversation to happen. As Darrel mentioned at the end of his <a href="http://biologos.org/blog/a-geneticists-journey">recent piece</a>, we at BioLogos want to assist our evangelical sisters and brothers in this conversation in any way we can, in full confidence that it can be done in an edifying way:</p>

<blockquote><p>BioLogos exists to help Christians think carefully about the ramifications of these new data in light of long-standing traditional ways of viewing human creation. We have some re-thinking to do, but it can be done and will be done within the context of a Christian faith that is fully orthodox and thoroughly evangelical. Any time we draw closer to truth, to God’s truth, we have nothing to fear. There is still much to learn, but we can look back at what we have learned with awe—absolute awe.</p></blockquote>]]></content:encoded>
        <pubDate>Fri, 28 Oct 11 08:25:23 -0700</pubDate>
        <dc:creator>Dennis Venema</dc:creator>
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        <title>Let&apos;s Not Surrender Science to the Secular World!</title>
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        <description>As much as I sympathize with Giberson and Stephens, I am concerned that one of their central assumptions—that there is a divide between ‘secular knowledge’ and Christian—essentially undermines their very pursuit of a middle ground where the two can be ‘integrated’.</description>
        <content:encoded><![CDATA[<p>I recently read with great interest and sympathy a NY Times Op Ed piece by Karl Giberson and Randall Stephens on <a href="http://www.nytimes.com/2011/10/18/opinion/the-evangelical-rejection-of-reason.html?_r=2" target="_blank">“The Evangelical Rejection of Reason.”</a> I say ‘interest and sympathy’ first of all because I consider both of the authors brothers in Christ whose friendship I value greatly. Karl in particular has been a teacher and mentor for me, and is the chief person to have sparked my interest in the conversation about science and theology. I say this secondly because I heartily agree with their desire to affirm that science and Christian faith need not be at odds and to reject both the fundamentalism of <em>scientistic</em> atheists like Richard Dawkins, on the one hand, and the fundamentalism of anti-scientific Christians like Ken Ham on the other. And I wish to do this not only because I think both types of fundamentalists are wrong, but also because, as a university educator myself, I am concerned about <a href="http://biologos.org/blog/six-reasons-young-christians-leave-church">the number of students who are leaving the church because they feel that they must choose between Christian faith and science</a>! I, like Giberson and Stephens, believe that they do not need to make this choice.</p>

<p>But, as much as I sympathize with Giberson and Stephens, I am concerned that one of their central assumptions—that there is a divide between ‘secular knowledge’ and Christian faith that must be overcome—essentially undermines their very pursuit of a middle ground where the two can be ‘integrated’. Indeed, even to assume that knowledge/science and Christian faith need to be ‘integrated’ seems to me to play right into the hands of the scientistic fundamentalists, to have completely sold them the proverbial farm. Instead, I think a much better and more distinctly <em>Christian</em> case can be made against Christian fundamentalist aversion for science, but before I can make the case, I need to talk more about what I perceive to be the problem with Giberson and Stephens’ call for integration.</p>

<p>To put it succinctly, even to talk about ‘secular knowledge’ and the ‘integration’ of science and faith is to buy into a problematic bifurcation of knowledge. The basic assumption lying behind such a distinction is that the world of knowledge can be divided into two discreet realms. On the one hand we have the world of secular knowledge, the goal of which is pure objectivity, which is governed by reason and humility, and which finds its ideals embodied in the practice of science. On the other we have the world of religion, which has a completely different set of goals and ideals. Religious knowledge is based upon faith, for the goal of religion is fidelity to God, to Jesus Christ, to the Bible as inspired by God and revelatory of God’s truth.</p>

<p>There are multiple problems with this bifurcation of types of knowledge. For one thing, it simply does not match the facts. There is no ‘Christianity’ that stands or ever has stood as a whole against science or reason. Whatever Christianity IS it certainly is an incredibly complex movement, and throughout its history there have been multiple ways that Christians have thought about the relationship between faith and reason, science and theology. This is a point I wish to unpack at greater length in a later blog, but for now it is sufficient to say that there has never been any single way that Christians have thought about the relationship between faith and reason, much less what faith and reason even mean. So to treat Christianity (if there even can be said to be such a ‘thing’) as a univocal totality is highly problematic.</p>

<p>Same goes for science. Is it truly or purely a secular pursuit? What are we to make, then, of the countless religious individuals who have been scientists and who have made significant contributions to our knowledge of the cosmos? Did they do so only by some kind of compromise between their faith and secular forms of knowledge? Again, the historical evidence would indicate quite the contrary. Take, for example, the Islamic Golden Age of scientific discovery (c. 750-1200). For Medieval Muslims there was no such thing as a secular realm, much less secular reason or knowledge. One of the most vibrant eras of human discovery, medieval Muslim scientists like Avicenna, Algaurizin, and Omar Khayyam made countless important advances in mathematics, astronomy, medicine, and even chemistry <em>because</em> of their faith that the cosmos is the creation of Allah and their conviction that they served their God by coming to understand better the majesty of Allah's handiwork. Indeed, one might say that it was their very rejection of a distinction between faith and reason, religion and science, that spurred on their desire to study and learn about the physical world.</p>

<p>Much the same could be said of scientific endeavors in the ‘Christian’ West up until the last two centuries. Many of the great scientists and nearly all of the great philosophers of medieval Europe were Catholic clerics, including a few popes! And the list of Christians who have made significant contributions to scientific discovery ever since is absolutely eye-popping: Nicholas Copernicus, Isaac Newton, Blaise Pascal, Rene Descartes, Gottfried Leibniz, Robert Boyle, Joseph Priestly, Michael Faraday, Gregor Mendel, Louis Pasteur, Lord Kevlin, Max Planck…to name just a few.</p>

<p>I can, I believe, say with a great sense of confidence that few, if any, of these great Christian scientists understood themselves to be <em>integrating</em> their <em>faith</em> with <em>secular knowledge</em>. In fact, even to talk about secular knowledge or a secular realm is to be somewhat anachronistic, for the very notion of the secular as a kind of non-religious, and therefore supposedly neutral, public sphere is a rather recent construction. Although with roots in both ancient and enlightenment philosophy and practically grounded in the rise of the modern nation state (in the efforts of monarchs to wrest power from religious authorities and later as democratic nations sought to establish religious toleration), the term itself and a full-blown philosophy of secularism did not appear until the mid-19th century.</p>

<p>Of course, secularism is now the name of the game in most nations outside of the Muslim world, even in countries that do still maintain some kind of official ties between state and religion, such as Britain or Norway. But even in such countries there is a considerable functional split between church and state, with faith now understood to be a matter of private, individual preference and practice, and such ‘objective’ and ‘neutral’ endeavors as science viewed as features of the public, secular sphere. Aside from the fact that neither science nor any other kind of so-called ‘secular’ thinking has proven to be all that neutral or objective (see, for instance, Stephen L. Carter’s <em>The Culture of Disbelief: How American Law and Politics Trivialize Religious Devotion</em> or just about anything written by Karl Popper, Thomas Kuhn, Jerome Ravitz, Paul Feyerabend, and Bruno Latour, among many others), it is easy to see why someone like Giberson or Stephens might presume the distinction between faith (religious) and science (secular): because that is what their audience generally assumes.</p>

<p>But this is <em>exactly</em> the division that we as Christians need to <em>reject</em> as we talk about the relationship between science and faith, and especially when it comes to providing a critique of Christian fundamentalism. Science belongs, I wish to argue, just as much to the church of Christ as it does to some so-called secular realm of knowledge. To treat the conversation otherwise is to give in to both the secular fundamentalists, who wish to see Christians surrender their faith in God for faith in science as the fount of all truth, and the Christian fundamentalists, who fear that <em>any</em> compromise with the secular ultimately amounts to selling out their fidelity to God.</p>

<div class="see-also" id="pop1" style="display:none;">A diverse philosophical and religious movement in the Greco-Roman world that exerted considerable influence on both Christianity and Judaism. Gnostics generally held that the material world was evil and/or filled with ignorance, having been created by a lesser deity than the supreme God. For Gnostics, salvation involved finding freedom from the physical world through the acquisition of secret knowledge (gnosis) revealed directly by God.</div>

<p>A far more appropriate way to criticize the anti-intellectual and anti-scientific positions of Christian fundamentalists is to demonstrate how deeply <em>anti-Christian</em> and <em>anti-biblical</em> these positions truly are. In fact, I wish to argue that these tendencies actually mark the resurgence of the ancient heresy <a onmouseover="toggle_visibility('pop1');" onmouseout="toggle_visibility('pop1');">Gnosticism</a>, which was roundly rejected by the Christian church in the first and second centuries. Defining Gnosticism and demonstrating the extent to which Christian fundamentalists are guilty of this heresy will be the central thrust of my next blog.</p>

<p class="intro">"I lay it down that all knowledge forms one whole, because its subject-matter is one; for the universe in its length and breadth is so intimately knit together, that we cannot separate off portion from portion, and operation from operation, except by a mental abstraction; and then again, as to its Creator, though He of course in His own Being is infinitely separate from it, and Theology has its departments towards which human knowledge has no relations, yet He has so implicated Himself with it, and taken it into His very bosom, by His presence in it, His providence over it, His impressions upon it, and His influences through it, that we cannot truly or fully contemplate it without in some main aspects contemplating Him." (John Henry Newman, (1858), <a href="http://www.newmanreader.org/works/idea/" target="_blank">"The Idea of a University"</a>, p. 50-51)</p>]]></content:encoded>
        <pubDate>Wed, 26 Oct 11 02:59:05 -0700</pubDate>
        <dc:creator>Mark H. Mann</dc:creator>
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